Wall clock time and date at job start Tue Mar 31 2020 06:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 115.55781 * 2 1 4 4 C 1.53074 * 117.51481 * 145.70381 * 2 1 3 5 5 C 1.52999 * 117.49852 * 214.31395 * 2 1 3 6 6 H 1.09002 * 117.50088 * 144.99148 * 5 2 1 7 7 C 1.53004 * 117.50041 * 359.97438 * 5 2 1 8 8 N 1.46499 * 109.47198 * 175.08762 * 7 5 2 9 9 C 1.34777 * 119.99665 * 180.27868 * 8 7 5 10 10 O 1.21343 * 120.00424 * 359.72011 * 9 8 7 11 11 C 1.49452 * 119.99622 * 179.72283 * 9 8 7 12 12 O 1.21353 * 119.99962 * 0.02562 * 11 9 8 13 13 N 1.34777 * 119.99621 * 179.97438 * 11 9 8 14 14 C 1.46505 * 119.99724 * 180.02562 * 13 11 9 15 15 C 1.52999 * 109.47192 * 180.02562 * 14 13 11 16 16 C 1.53007 * 109.46946 * 300.00266 * 15 14 13 17 17 C 1.53003 * 109.46917 * 60.00063 * 15 14 13 18 18 C 1.50693 * 109.47328 * 179.97438 * 15 14 13 19 19 H 1.08001 * 120.00171 * 0.02562 * 18 15 14 20 20 C 1.37875 * 120.00443 * 179.97438 * 18 15 14 21 21 N 1.31514 * 119.99480 * 0.02562 * 20 18 15 22 22 Si 1.86796 * 120.00574 * 180.02562 * 20 18 15 23 23 H 1.48503 * 109.47080 * 89.99713 * 22 20 18 24 24 H 1.48499 * 109.47268 * 210.00364 * 22 20 18 25 25 H 1.48501 * 109.47048 * 330.00165 * 22 20 18 26 26 H 1.09005 * 109.46624 * 205.68789 * 1 2 3 27 27 H 1.09002 * 109.46787 * 325.68445 * 1 2 3 28 28 H 1.08993 * 109.47119 * 85.69107 * 1 2 3 29 29 H 1.08994 * 117.51325 * 0.02562 * 4 2 1 30 30 H 1.08993 * 117.51216 * 214.95129 * 4 2 1 31 31 H 1.09009 * 109.46730 * 55.08549 * 7 5 2 32 32 H 1.08998 * 109.46846 * 295.09094 * 7 5 2 33 33 H 0.97001 * 119.99790 * 359.97438 * 8 7 5 34 34 H 0.96990 * 120.00491 * 0.02562 * 13 11 9 35 35 H 1.09000 * 109.47031 * 300.00685 * 14 13 11 36 36 H 1.09001 * 109.47048 * 60.00288 * 14 13 11 37 37 H 1.08990 * 109.46922 * 59.99956 * 16 15 14 38 38 H 1.09002 * 109.46391 * 180.02562 * 16 15 14 39 39 H 1.08999 * 109.46333 * 299.99286 * 16 15 14 40 40 H 1.08995 * 109.47357 * 59.99793 * 17 15 14 41 41 H 1.09001 * 109.46873 * 180.02562 * 17 15 14 42 42 H 1.09003 * 109.47092 * 299.99902 * 17 15 14 43 43 H 0.97009 * 119.99998 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2372 -1.1216 0.7650 5 6 2.2365 -1.1209 -0.7651 6 1 3.1713 -0.8750 -1.2688 7 6 1.3589 -2.1565 -1.4711 8 7 2.2059 -3.0721 -2.2393 9 6 1.6464 -4.0698 -2.9521 10 8 0.4414 -4.2128 -2.9534 11 6 2.5101 -5.0002 -3.7408 12 8 3.7152 -4.8575 -3.7390 13 7 1.9506 -5.9982 -4.4531 14 6 2.7973 -6.9105 -5.2258 15 6 1.9193 -7.9425 -5.9364 16 6 1.1263 -8.7388 -4.8981 17 6 0.9500 -7.2253 -6.8783 18 6 2.7902 -8.8806 -6.7317 19 1 3.8627 -8.7537 -6.7302 20 6 2.2179 -9.9015 -7.4605 21 7 0.9119 -10.0563 -7.4620 22 14 3.2974 -11.0647 -8.4458 23 1 3.6828 -12.2208 -7.5972 24 1 2.5482 -11.5497 -9.6327 25 1 4.5197 -10.3483 -8.8910 26 1 -0.3633 -0.9262 0.4455 27 1 -0.3633 0.8488 0.5794 28 1 -0.3633 0.0772 -1.0247 29 1 1.6125 -1.8597 1.2679 30 1 3.1725 -0.8760 1.2678 31 1 0.6683 -1.6488 -2.1446 32 1 0.7939 -2.7204 -0.7289 33 1 3.1692 -2.9576 -2.2386 34 1 0.9875 -6.1124 -4.4542 35 1 3.3620 -6.3432 -5.9657 36 1 3.4882 -7.4211 -4.5548 37 1 0.4964 -8.0600 -4.3233 38 1 0.5011 -9.4743 -5.4044 39 1 1.8169 -9.2497 -4.2272 40 1 1.5149 -6.6580 -7.6179 41 1 0.3242 -7.9606 -7.3842 42 1 0.3201 -6.5466 -6.3034 43 1 0.5092 -10.7744 -7.9751 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348651403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:10 Heat of formation + Delta-G solvation = -61.497173 kcal Electronic energy + Delta-G solvation = -22029.662490 eV Core-core repulsion = 18689.328562 eV Total energy + Delta-G solvation = -3340.333927 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.42046 -38.84656 -37.99673 -36.47278 -34.60468 -33.23201 -30.88610 -29.12793 -27.81743 -25.97003 -25.71956 -25.18857 -22.99810 -21.92213 -20.54917 -19.83055 -18.93112 -18.04805 -16.91052 -16.28856 -15.86097 -15.70665 -14.99869 -14.89560 -14.54274 -14.40233 -14.00848 -13.59041 -13.37597 -13.24073 -12.93122 -12.71800 -12.48525 -12.21937 -11.91699 -11.58942 -11.46271 -11.39722 -11.18036 -10.88013 -10.70494 -10.44407 -10.39703 -10.33814 -10.19723 -9.65000 -9.53476 -9.26984 -9.21452 -8.80114 -8.59594 -8.37027 -6.02607 -4.13400 1.66934 2.55777 3.28119 3.32392 3.35295 3.38837 3.49248 3.95261 4.20730 4.39049 4.44308 4.47190 4.81272 4.86350 4.93638 5.22041 5.24044 5.37892 5.44288 5.47565 5.48758 5.65576 5.78342 5.91995 6.11812 6.17799 6.23884 6.47344 6.63690 6.83019 6.85513 6.94447 7.00666 7.12041 7.33642 7.55355 7.67359 7.72586 7.98090 8.00319 8.13063 8.32940 8.41801 8.86867 9.52502 10.98824 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.047873 B = 0.002800 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.744704 B = 9997.026691 C =10304.719992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.142 4.142 3 H 0.107 0.893 4 C -0.172 4.172 5 C -0.170 4.170 6 H 0.113 0.887 7 C 0.150 3.850 8 N -0.704 5.704 9 C 0.507 3.493 10 O -0.521 6.521 11 C 0.496 3.504 12 O -0.536 6.536 13 N -0.680 5.680 14 C 0.128 3.872 15 C 0.056 3.944 16 C -0.134 4.134 17 C -0.134 4.134 18 C -0.507 4.507 19 H 0.058 0.942 20 C 0.066 3.934 21 N -0.885 5.885 22 Si 0.895 3.105 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.413 0.587 34 H 0.411 0.589 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.009 0.991 38 H 0.087 0.913 39 H 0.027 0.973 40 H 0.028 0.972 41 H 0.087 0.913 42 H 0.008 0.992 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.227 16.941 13.199 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.161 4.161 3 H 0.125 0.875 4 C -0.209 4.209 5 C -0.188 4.188 6 H 0.131 0.869 7 C 0.027 3.973 8 N -0.358 5.358 9 C 0.288 3.712 10 O -0.397 6.397 11 C 0.275 3.725 12 O -0.414 6.414 13 N -0.332 5.332 14 C 0.006 3.994 15 C 0.055 3.945 16 C -0.192 4.192 17 C -0.192 4.192 18 C -0.546 4.546 19 H 0.077 0.923 20 C -0.135 4.135 21 N -0.523 5.523 22 Si 0.723 3.277 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.249 0.751 34 H 0.248 0.752 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.028 0.972 38 H 0.106 0.894 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.106 0.894 42 H 0.027 0.973 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.401 16.782 13.094 21.290 hybrid contribution 0.647 -0.608 -0.513 1.025 sum 0.246 16.174 12.581 20.493 Atomic orbital electron populations 1.21406 0.92542 1.02302 1.02306 1.22392 0.95672 0.94328 1.03702 0.87485 1.23256 1.02776 1.01528 0.93375 1.22545 1.01613 1.00079 0.94568 0.86910 1.20943 0.92269 0.89446 0.94664 1.45737 1.11838 1.29997 1.48231 1.20481 0.88318 0.81995 0.80410 1.90752 1.14517 1.71797 1.62612 1.19957 0.88015 0.82841 0.81676 1.90722 1.14210 1.72581 1.63925 1.46221 1.12664 1.28573 1.45709 1.21947 0.93508 0.90428 0.93522 1.18380 0.92772 0.90972 0.92348 1.21862 0.99501 1.00406 0.97413 1.21860 0.99335 0.98930 0.99036 1.20949 0.92966 1.12379 1.28274 0.92350 1.24885 0.95003 0.97299 0.96331 1.69811 1.09151 1.31885 1.41441 0.86552 0.80501 0.81087 0.79606 1.20706 1.21258 1.19906 0.92189 0.91953 0.91802 0.88384 0.88527 0.90591 0.90879 0.75087 0.75183 0.91994 0.91997 0.97248 0.89422 0.95341 0.95327 0.89430 0.97260 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.80 9.20 37.16 0.34 -0.46 16 2 C -0.14 -0.91 6.41 -90.58 -0.58 -1.49 16 3 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.17 -1.14 9.83 -26.69 -0.26 -1.40 16 5 C -0.17 -1.26 5.85 -90.62 -0.53 -1.79 16 6 H 0.11 0.77 8.04 -51.93 -0.42 0.36 16 7 C 0.15 1.46 5.03 -4.04 -0.02 1.44 16 8 N -0.70 -8.40 5.55 -60.73 -0.34 -8.74 16 9 C 0.51 7.88 7.89 -11.58 -0.09 7.79 16 10 O -0.52 -9.12 16.48 5.50 0.09 -9.03 16 11 C 0.50 8.79 7.89 -11.58 -0.09 8.70 16 12 O -0.54 -10.32 16.48 5.49 0.09 -10.23 16 13 N -0.68 -12.76 4.95 -60.72 -0.30 -13.06 16 14 C 0.13 2.69 4.50 -4.04 -0.02 2.67 16 15 C 0.06 1.30 0.50 -155.66 -0.08 1.23 16 16 C -0.13 -3.08 8.08 37.16 0.30 -2.78 16 17 C -0.13 -3.08 8.08 37.16 0.30 -2.78 16 18 C -0.51 -13.18 8.01 -34.44 -0.28 -13.46 16 19 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 20 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 21 N -0.88 -23.65 9.35 55.43 0.52 -23.13 16 22 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.41 7.83 -51.93 -0.41 0.00 16 29 H 0.10 0.66 7.94 -51.93 -0.41 0.25 16 30 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.77 7.77 -51.92 -0.40 0.36 16 32 H 0.07 0.74 7.87 -51.93 -0.41 0.33 16 33 H 0.41 4.44 7.87 -40.82 -0.32 4.11 16 34 H 0.41 7.60 5.63 -40.82 -0.23 7.37 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 38 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 42 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 43 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 349.86 15.07 5.27 5.27 Total: -1.00 -28.39 349.86 -7.64 -36.03 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.85 Total: 7.98 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.10 Total: -0.69 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -0.12 Total: -44.93 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.18 Total: -19.27 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.39 -7.64 -36.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348651403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.468 kcal (2) G-P(sol) polarization free energy of solvation -28.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds