Wall clock time and date at job start Tue Mar 31 2020 06:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 115.54838 * 2 1 4 4 C 1.53077 * 117.49434 * 214.27439 * 2 1 3 5 5 C 1.53001 * 117.50213 * 145.67062 * 2 1 3 6 6 H 1.09001 * 117.49878 * 359.97368 * 5 2 1 7 7 C 1.52997 * 117.49951 * 214.97810 * 5 2 1 8 8 N 1.46500 * 109.47007 * 175.08716 * 7 5 2 9 9 C 1.34781 * 120.00080 * 180.02562 * 8 7 5 10 10 O 1.21348 * 119.99662 * 359.97438 * 9 8 7 11 11 C 1.49452 * 120.00084 * 179.97438 * 9 8 7 12 12 O 1.21344 * 119.99831 * 359.97438 * 11 9 8 13 13 N 1.34773 * 120.00000 * 179.97438 * 11 9 8 14 14 C 1.46500 * 119.99996 * 180.02562 * 13 11 9 15 15 C 1.52997 * 109.47007 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.47127 * 60.00219 * 15 14 13 17 17 C 1.52997 * 109.47232 * 300.00097 * 15 14 13 18 18 C 1.50699 * 109.47078 * 179.97438 * 15 14 13 19 19 H 1.07999 * 120.00019 * 0.02562 * 18 15 14 20 20 C 1.37879 * 119.99908 * 180.02562 * 18 15 14 21 21 N 1.31510 * 120.00364 * 359.97438 * 20 18 15 22 22 Si 1.86803 * 119.99946 * 180.02562 * 20 18 15 23 23 H 1.48505 * 109.46997 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47438 * 119.99776 * 22 20 18 25 25 H 1.48494 * 109.47197 * 239.99736 * 22 20 18 26 26 H 1.09005 * 109.46892 * 274.32576 * 1 2 3 27 27 H 1.08992 * 109.47680 * 34.32740 * 1 2 3 28 28 H 1.09000 * 109.47460 * 154.33357 * 1 2 3 29 29 H 1.09002 * 117.51476 * 145.03425 * 4 2 1 30 30 H 1.08997 * 117.49594 * 359.97438 * 4 2 1 31 31 H 1.09002 * 109.47153 * 55.08805 * 7 5 2 32 32 H 1.08992 * 109.47303 * 295.08317 * 7 5 2 33 33 H 0.96998 * 120.00098 * 359.97438 * 8 7 5 34 34 H 0.96998 * 119.99906 * 0.02562 * 13 11 9 35 35 H 1.09002 * 109.47092 * 60.00078 * 14 13 11 36 36 H 1.08996 * 109.47197 * 299.99794 * 14 13 11 37 37 H 1.09001 * 109.47002 * 299.99574 * 16 15 14 38 38 H 1.08993 * 109.46955 * 60.00011 * 16 15 14 39 39 H 1.09000 * 109.47050 * 179.97438 * 16 15 14 40 40 H 1.09000 * 109.47140 * 180.02562 * 17 15 14 41 41 H 1.09001 * 109.47230 * 299.99295 * 17 15 14 42 42 H 1.09001 * 109.47375 * 60.00133 * 17 15 14 43 43 H 0.96999 * 120.00396 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2367 -1.1221 -0.7647 5 6 2.2365 -1.1207 0.7653 6 1 1.6113 -1.8578 1.2693 7 6 3.5490 -0.7754 1.4716 8 7 4.0097 -1.9345 2.2401 9 6 5.1536 -1.8616 2.9491 10 8 5.8022 -0.8360 2.9504 11 6 5.6233 -3.0439 3.7335 12 8 4.9744 -4.0692 3.7325 13 7 6.7674 -2.9711 4.4420 14 6 7.2280 -4.1302 5.2105 15 6 8.5403 -3.7847 5.9172 16 6 8.3146 -2.6030 6.8626 17 6 9.5971 -3.4103 4.8762 18 6 9.0138 -4.9768 6.7083 19 1 8.4367 -5.8897 6.7067 20 6 10.1837 -4.9019 7.4340 21 7 10.8867 -3.7905 7.4356 22 14 10.7711 -6.3799 8.4140 23 1 9.8087 -7.4985 8.2472 24 1 12.1084 -6.7995 7.9233 25 1 10.8627 -6.0164 9.8508 26 1 -0.3633 0.0775 1.0248 27 1 -0.3634 0.8486 -0.5795 28 1 -0.3634 -0.9262 -0.4451 29 1 3.1719 -0.8770 -1.2681 30 1 1.6113 -1.8601 -1.2671 31 1 3.3887 0.0666 2.1450 32 1 4.3017 -0.5091 0.7297 33 1 3.4910 -2.7541 2.2393 34 1 7.2859 -2.1513 4.4431 35 1 7.3884 -4.9722 4.5370 36 1 6.4754 -4.3966 5.9525 37 1 7.9719 -1.7406 6.2908 38 1 7.5617 -2.8697 7.6043 39 1 9.2493 -2.3571 7.3665 40 1 10.5321 -3.1646 5.3797 41 1 9.7580 -4.2522 4.2028 42 1 9.2544 -2.5479 4.3044 43 1 11.7099 -3.7380 7.9459 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348651407.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:18 Heat of formation + Delta-G solvation = -62.192813 kcal Electronic energy + Delta-G solvation = -21898.478620 eV Core-core repulsion = 18558.114527 eV Total energy + Delta-G solvation = -3340.364092 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.41057 -38.77311 -37.98001 -36.47390 -34.66970 -33.24222 -30.88650 -29.60213 -27.35508 -25.89679 -25.71962 -25.17360 -23.00385 -21.53895 -21.06191 -19.94328 -18.96718 -18.21434 -16.67420 -16.13493 -15.85479 -15.65874 -15.03376 -14.82109 -14.71196 -14.35430 -14.11483 -13.53512 -13.44003 -13.21884 -12.93423 -12.66426 -12.55956 -12.21945 -11.82151 -11.72910 -11.46739 -11.40046 -11.18749 -10.89326 -10.67291 -10.48320 -10.40027 -10.33979 -10.19789 -9.65142 -9.53279 -9.27648 -9.21304 -8.79195 -8.59671 -8.37406 -6.02709 -4.13389 1.66867 2.55170 3.26940 3.31514 3.35681 3.39815 3.49304 3.93753 4.20817 4.39064 4.41677 4.53490 4.81065 4.85020 4.93349 5.17575 5.23970 5.38192 5.41898 5.43581 5.46162 5.64231 5.77123 5.90088 6.11778 6.17346 6.23915 6.47379 6.63717 6.82980 6.85555 6.94492 7.00661 7.11839 7.33699 7.55314 7.67430 7.72542 7.98022 8.00321 8.13083 8.32914 8.41799 8.87109 9.52517 10.98731 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.050340 B = 0.002695 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.082762 B =10388.489292 C =10618.150452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.144 4.144 3 H 0.107 0.893 4 C -0.171 4.171 5 C -0.169 4.169 6 H 0.113 0.887 7 C 0.149 3.851 8 N -0.704 5.704 9 C 0.507 3.493 10 O -0.522 6.522 11 C 0.496 3.504 12 O -0.536 6.536 13 N -0.680 5.680 14 C 0.128 3.872 15 C 0.055 3.945 16 C -0.134 4.134 17 C -0.134 4.134 18 C -0.506 4.506 19 H 0.059 0.941 20 C 0.066 3.934 21 N -0.884 5.884 22 Si 0.894 3.106 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.413 0.587 34 H 0.411 0.589 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.009 0.991 38 H 0.027 0.973 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.027 0.973 42 H 0.009 0.991 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.008 7.025 -13.171 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.163 4.163 3 H 0.126 0.874 4 C -0.208 4.208 5 C -0.187 4.187 6 H 0.131 0.869 7 C 0.026 3.974 8 N -0.358 5.358 9 C 0.288 3.712 10 O -0.397 6.397 11 C 0.275 3.725 12 O -0.414 6.414 13 N -0.332 5.332 14 C 0.006 3.994 15 C 0.054 3.946 16 C -0.191 4.191 17 C -0.191 4.191 18 C -0.544 4.544 19 H 0.077 0.923 20 C -0.136 4.136 21 N -0.523 5.523 22 Si 0.722 3.278 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.211 1.211 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.249 0.751 34 H 0.248 0.752 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.027 0.973 38 H 0.047 0.953 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.047 0.953 42 H 0.028 0.972 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.798 7.105 -13.069 21.699 hybrid contribution 0.361 -0.783 0.523 1.008 sum -15.437 6.323 -12.546 20.873 Atomic orbital electron populations 1.21379 0.92520 1.02097 1.02106 1.22407 0.95468 0.94641 1.03760 0.87443 1.23293 1.02841 1.01298 0.93402 1.22575 0.98404 1.03189 0.94534 0.86903 1.20966 0.93594 0.88176 0.94667 1.45729 1.24369 1.17311 1.48369 1.20488 0.81550 0.88774 0.80392 1.90754 1.55169 1.31302 1.62465 1.19950 0.83033 0.87839 0.81655 1.90720 1.55830 1.31115 1.63775 1.46220 1.22224 1.18765 1.45950 1.21943 0.98171 0.85670 0.93603 1.18393 0.88405 0.95389 0.92387 1.21858 1.02405 0.95869 0.99013 1.21856 1.03037 0.96854 0.97392 1.20985 1.07298 0.97795 1.28369 0.92294 1.24892 0.96392 0.95951 0.96338 1.69815 1.15425 1.25534 1.41488 0.86500 0.78623 0.82902 0.79751 1.19761 1.21060 1.21065 0.92001 0.91966 0.92438 0.88439 0.88483 0.90623 0.90870 0.75075 0.75181 0.91993 0.91995 0.97250 0.95341 0.89430 0.89437 0.95343 0.97246 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 10.19 37.16 0.38 -0.30 16 2 C -0.14 -0.92 6.13 -90.58 -0.56 -1.48 16 3 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.17 -1.13 9.83 -26.69 -0.26 -1.39 16 5 C -0.17 -1.24 5.56 -90.62 -0.50 -1.75 16 6 H 0.11 0.79 8.04 -51.93 -0.42 0.37 16 7 C 0.15 1.44 5.96 -4.04 -0.02 1.42 16 8 N -0.70 -8.37 5.55 -60.73 -0.34 -8.70 16 9 C 0.51 7.87 7.89 -11.58 -0.09 7.78 16 10 O -0.52 -9.14 16.48 5.50 0.09 -9.05 16 11 C 0.50 8.78 7.89 -11.59 -0.09 8.69 16 12 O -0.54 -10.32 16.48 5.50 0.09 -10.23 16 13 N -0.68 -12.75 4.95 -60.73 -0.30 -13.05 16 14 C 0.13 2.69 4.50 -4.04 -0.02 2.67 16 15 C 0.05 1.28 0.50 -155.66 -0.08 1.20 16 16 C -0.13 -3.07 8.08 37.16 0.30 -2.77 16 17 C -0.13 -3.07 8.08 37.16 0.30 -2.77 16 18 C -0.51 -13.14 8.01 -34.44 -0.28 -13.42 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 20 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 21 N -0.88 -23.63 9.35 55.43 0.52 -23.11 16 22 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.30 7.90 -51.93 -0.41 -0.11 16 29 H 0.10 0.64 8.03 -51.93 -0.42 0.22 16 30 H 0.10 0.57 8.05 -51.93 -0.42 0.16 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.73 7.87 -51.93 -0.41 0.32 16 33 H 0.41 4.43 7.87 -40.82 -0.32 4.11 16 34 H 0.41 7.59 5.63 -40.82 -0.23 7.36 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 40 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 41 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 43 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 351.89 15.07 5.30 5.30 Total: -1.00 -28.40 351.89 -7.56 -35.96 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.89 Total: 7.74 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -1.01 Total: -0.48 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.12 Total: -44.86 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: 0.18 Total: -19.28 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -28.40 -7.56 -35.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348651407.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.228 kcal (2) G-P(sol) polarization free energy of solvation -28.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds