Wall clock time and date at job start Tue Mar 31 2020 07:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50701 * 120.00110 * 2 1 4 4 C 1.52994 * 109.47202 * 240.00121 * 3 2 1 5 5 O 1.42898 * 109.47173 * 0.02562 * 3 2 1 6 6 C 1.53007 * 109.46917 * 120.00359 * 3 2 1 7 7 C 1.50697 * 109.47214 * 180.02562 * 6 3 2 8 8 O 1.21288 * 119.99843 * 359.97438 * 7 6 3 9 9 N 1.34769 * 120.00174 * 180.02562 * 7 6 3 10 10 C 1.46502 * 120.00245 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.64129 * 325.70040 * 10 9 7 12 12 C 1.55157 * 110.86875 * 88.94853 * 10 9 7 13 13 C 1.54909 * 101.57958 * 153.93745 * 12 10 9 14 14 N 1.47426 * 104.83381 * 322.98989 * 13 12 10 15 15 C 1.36939 * 125.64917 * 204.16150 * 14 13 12 16 16 H 1.08004 * 119.99851 * 179.97438 * 15 14 13 17 17 C 1.38815 * 120.00106 * 359.96353 * 15 14 13 18 18 N 1.31618 * 119.99789 * 359.97438 * 17 15 14 19 19 Si 1.86791 * 120.00098 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47200 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47221 * 119.99451 * 19 17 15 22 22 H 1.48499 * 109.47284 * 239.99748 * 19 17 15 23 23 C 1.47018 * 108.70104 * 24.12870 * 14 13 12 24 24 H 1.08998 * 109.88222 * 239.52595 * 23 14 13 25 25 C 1.53003 * 110.01041 * 118.43370 * 23 14 13 26 26 H 1.07999 * 119.99755 * 359.97438 * 1 2 3 27 27 H 1.07994 * 120.00065 * 179.97438 * 1 2 3 28 28 H 1.07999 * 119.99755 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47663 * 300.00084 * 4 3 2 30 30 H 1.08999 * 109.47462 * 60.00383 * 4 3 2 31 31 H 1.08999 * 109.47122 * 180.02562 * 4 3 2 32 32 H 0.96704 * 113.99977 * 59.99942 * 5 3 2 33 33 H 1.08995 * 109.47109 * 59.99723 * 6 3 2 34 34 H 1.09003 * 109.46827 * 299.99949 * 6 3 2 35 35 H 0.97000 * 120.00112 * 359.97438 * 9 7 6 36 36 H 1.09000 * 111.00495 * 272.01128 * 12 10 9 37 37 H 1.08997 * 111.00429 * 35.86706 * 12 10 9 38 38 H 1.08998 * 110.36917 * 204.14700 * 13 12 10 39 39 H 1.09009 * 110.46209 * 81.87337 * 13 12 10 40 40 H 0.96996 * 119.99991 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.47137 * 302.10607 * 25 23 14 42 42 H 1.08997 * 109.47286 * 62.11746 * 25 23 14 43 43 H 1.09002 * 109.47086 * 182.11335 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9431 1.3862 -1.2492 5 8 1.1350 2.3913 0.0006 6 6 2.9433 1.3860 1.2493 7 6 3.6963 2.6914 1.2497 8 8 3.5448 3.4792 0.3400 9 7 4.5390 2.9829 2.2602 10 6 5.2715 4.2516 2.2603 11 1 5.5296 4.5464 1.2431 12 6 4.4495 5.3644 2.9626 13 6 5.5693 6.3166 3.4515 14 7 6.6716 5.4259 3.8576 15 6 7.6569 5.7343 4.7572 16 1 8.4231 5.0092 4.9886 17 6 7.6710 6.9791 5.3715 18 7 6.7376 7.8630 5.0890 19 14 9.0145 7.3996 6.5991 20 1 9.9353 6.2431 6.7407 21 1 9.7738 8.5811 6.1167 22 1 8.4025 7.7086 7.9164 23 6 6.5373 4.1512 3.1374 24 1 6.4311 3.3326 3.8492 25 6 7.7648 3.9169 2.2546 26 1 -0.5400 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 3.6515 0.5577 -1.2493 30 1 2.3165 1.3285 -2.1392 31 1 3.4885 2.3299 -1.2490 32 1 0.5440 2.4030 0.7659 33 1 3.6515 0.5575 1.2492 34 1 2.3166 1.3283 2.1393 35 1 4.6605 2.3527 2.9875 36 1 3.7896 5.8677 2.2560 37 1 3.8848 4.9614 3.8033 38 1 5.2233 6.9041 4.3020 39 1 5.8907 6.9736 2.6432 40 1 6.7472 8.7326 5.5185 41 1 7.8751 4.7476 1.5576 42 1 8.6545 3.8470 2.8805 43 1 7.6393 2.9889 1.6967 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692156779.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:48 Heat of formation + Delta-G solvation = -39.311739 kcal Electronic energy + Delta-G solvation = -22924.225296 eV Core-core repulsion = 19584.853401 eV Total energy + Delta-G solvation = -3339.371895 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.11195 -38.41318 -37.17052 -33.96229 -33.15654 -32.09203 -31.32395 -30.35718 -28.94531 -27.74672 -24.66390 -23.98675 -22.82612 -20.55402 -20.09320 -19.82153 -19.52803 -17.33573 -16.83270 -16.40499 -15.93301 -15.59021 -15.14944 -14.59537 -14.53333 -13.88896 -13.64935 -13.50784 -13.01004 -12.78127 -12.41561 -12.27577 -12.14641 -12.10599 -11.72380 -11.62223 -11.51809 -11.22997 -11.13312 -10.86444 -10.83237 -10.50734 -10.36639 -10.29706 -10.07077 -9.74711 -9.70312 -9.59656 -9.31457 -8.67523 -8.53580 -6.87811 -5.66057 -3.08993 1.93183 2.87156 3.37311 3.39174 3.44781 3.46676 4.14302 4.46296 4.53775 4.58365 4.81903 4.98270 5.09156 5.31653 5.37042 5.42055 5.50127 5.55029 5.57098 5.65383 5.77148 5.84408 5.94342 6.12959 6.21582 6.26319 6.30246 6.33313 6.39329 6.48169 6.57874 6.63690 6.74460 6.88812 7.14152 7.52817 7.58971 7.62477 7.79619 7.85430 8.34505 8.52367 9.20073 9.81053 10.45100 11.37261 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.041717 B = 0.003377 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.027090 B = 8288.818611 C = 8481.752957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.186 4.186 3 C 0.177 3.823 4 C -0.148 4.148 5 O -0.537 6.537 6 C -0.167 4.167 7 C 0.511 3.489 8 O -0.520 6.520 9 N -0.719 5.719 10 C 0.136 3.864 11 H 0.091 0.909 12 C -0.152 4.152 13 C 0.152 3.848 14 N -0.596 5.596 15 C -0.220 4.220 16 H 0.078 0.922 17 C -0.011 4.011 18 N -0.920 5.920 19 Si 0.914 3.086 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.155 3.845 24 H 0.034 0.966 25 C -0.155 4.155 26 H 0.105 0.895 27 H 0.099 0.901 28 H 0.115 0.885 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.368 0.632 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.396 0.604 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.108 0.892 39 H 0.014 0.986 40 H 0.252 0.748 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.644 -16.248 -7.290 20.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.204 4.204 3 C 0.136 3.864 4 C -0.204 4.204 5 O -0.342 6.342 6 C -0.207 4.207 7 C 0.296 3.704 8 O -0.396 6.396 9 N -0.370 5.370 10 C 0.032 3.968 11 H 0.109 0.891 12 C -0.192 4.192 13 C 0.027 3.973 14 N -0.321 5.321 15 C -0.348 4.348 16 H 0.096 0.904 17 C -0.206 4.206 18 N -0.569 5.569 19 Si 0.745 3.255 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.047 3.953 24 H 0.052 0.948 25 C -0.214 4.214 26 H 0.123 0.877 27 H 0.117 0.883 28 H 0.133 0.867 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.215 0.785 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.229 0.771 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.126 0.874 39 H 0.032 0.968 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -9.360 -15.339 -8.377 19.825 hybrid contribution 0.524 -0.393 1.579 1.709 sum -8.836 -15.732 -6.798 19.281 Atomic orbital electron populations 1.23868 0.96064 1.02358 0.99690 1.23645 0.96760 0.98869 1.01131 1.19838 0.88008 0.83923 0.94648 1.21941 0.98836 1.04465 0.95198 1.86740 1.50048 1.48878 1.48509 1.22403 1.00491 0.97315 1.00511 1.20313 0.79710 0.88142 0.82199 1.90679 1.63693 1.49940 1.35314 1.46115 1.44685 1.21320 1.24921 1.22104 0.91889 0.82663 1.00184 0.89084 1.23374 0.99064 0.97658 0.99060 1.21945 0.84788 0.90903 0.99616 1.44503 1.29758 1.10519 1.47297 1.19069 1.02977 0.98339 1.14430 0.90435 1.24793 0.98964 0.96320 1.00566 1.69811 1.34283 1.06699 1.46077 0.86009 0.80851 0.77980 0.80706 1.20565 1.21763 1.21779 1.20990 0.91605 0.90867 0.91857 0.94803 1.22237 0.99849 0.99553 0.99803 0.87682 0.88319 0.86715 0.91983 0.92342 0.88536 0.78529 0.88217 0.88863 0.77065 0.92004 0.92156 0.87404 0.96783 0.93744 0.92944 0.92781 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.38 13.93 29.01 0.40 -0.98 16 2 C -0.19 -1.52 8.77 -36.03 -0.32 -1.84 16 3 C 0.18 1.86 0.94 -91.77 -0.09 1.77 16 4 C -0.15 -1.71 8.51 37.15 0.32 -1.39 16 5 O -0.54 -6.60 10.84 -53.50 -0.58 -7.18 16 6 C -0.17 -1.61 4.93 -27.88 -0.14 -1.75 16 7 C 0.51 7.17 7.39 -10.99 -0.08 7.09 16 8 O -0.52 -9.34 12.64 -12.72 -0.16 -9.51 16 9 N -0.72 -10.19 5.20 -52.03 -0.27 -10.46 16 10 C 0.14 2.47 2.79 -66.10 -0.18 2.28 16 11 H 0.09 1.79 7.33 -51.93 -0.38 1.41 16 12 C -0.15 -3.04 6.77 -24.58 -0.17 -3.20 16 13 C 0.15 3.73 5.89 -2.53 -0.01 3.72 16 14 N -0.60 -14.82 3.13 -162.57 -0.51 -15.33 16 15 C -0.22 -5.96 9.90 -15.06 -0.15 -6.11 16 16 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 17 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 18 N -0.92 -26.65 10.09 55.49 0.56 -26.09 16 19 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 C 0.15 3.09 3.47 -66.95 -0.23 2.86 16 24 H 0.03 0.66 7.70 -51.93 -0.40 0.26 16 25 C -0.15 -2.87 9.14 37.16 0.34 -2.53 16 26 H 0.11 0.80 6.41 -52.49 -0.34 0.46 16 27 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 28 H 0.11 0.77 8.06 -52.49 -0.42 0.35 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.10 1.41 5.51 -51.93 -0.29 1.13 16 32 H 0.37 3.27 8.05 45.56 0.37 3.64 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.40 4.61 8.34 -40.82 -0.34 4.27 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.11 2.96 5.87 -51.93 -0.31 2.65 16 39 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.03 8.05 -51.93 -0.42 0.61 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -32.22 343.50 -7.51 -39.73 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -6.30 Total: 7.33 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: -0.40 Total: -0.48 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.22 Total: -51.88 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.74 Total: -16.69 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.22 -7.51 -39.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692156779.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.414 kcal (2) G-P(sol) polarization free energy of solvation -32.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds