Wall clock time and date at job start Tue Mar 31 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50707 * 119.99591 * 2 1 4 4 O 1.42895 * 109.47121 * 135.00081 * 3 2 1 5 5 C 1.42905 * 113.99815 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47036 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47118 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47230 * 179.97438 * 7 6 5 9 9 O 1.21275 * 119.99942 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99893 * 180.02562 * 8 7 6 11 11 C 1.46508 * 119.99872 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.46970 * 179.97438 * 11 10 8 13 13 C 1.53952 * 113.73810 * 86.26234 * 12 11 10 14 14 N 1.47808 * 86.03517 * 90.88018 * 13 12 11 15 15 C 1.36933 * 134.45725 * 204.64095 * 14 13 12 16 16 H 1.07996 * 120.00846 * 173.35075 * 15 14 13 17 17 C 1.38814 * 119.99714 * 353.35046 * 15 14 13 18 18 N 1.31625 * 120.00245 * 5.06241 * 17 15 14 19 19 Si 1.86809 * 120.00055 * 185.06239 * 17 15 14 20 20 H 1.48500 * 109.46973 * 94.98689 * 19 17 15 21 21 H 1.48500 * 109.47017 * 214.98741 * 19 17 15 22 22 H 1.48499 * 109.46841 * 334.98626 * 19 17 15 23 23 C 1.47582 * 91.05267 * 24.54774 * 14 13 12 24 24 H 1.08001 * 119.99118 * 180.02562 * 1 2 3 25 25 H 1.07990 * 120.00415 * 359.97438 * 1 2 3 26 26 H 1.08001 * 120.00422 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47216 * 14.99424 * 3 2 1 28 28 H 1.09000 * 109.46731 * 255.00190 * 3 2 1 29 29 H 1.09006 * 109.47041 * 60.00006 * 5 4 3 30 30 H 1.08990 * 109.47098 * 300.00026 * 5 4 3 31 31 H 1.08992 * 109.47513 * 59.99967 * 6 5 4 32 32 H 1.09002 * 109.47047 * 299.99850 * 6 5 4 33 33 H 1.09006 * 109.47045 * 60.00169 * 7 6 5 34 34 H 1.09000 * 109.47057 * 300.00365 * 7 6 5 35 35 H 0.96998 * 120.00722 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.46684 * 60.00132 * 11 10 8 37 37 H 1.08993 * 109.47022 * 299.99793 * 11 10 8 38 38 H 1.09000 * 112.94442 * 314.66815 * 12 11 10 39 39 H 1.09004 * 113.76381 * 205.14682 * 13 12 11 40 40 H 1.09003 * 113.76793 * 336.53894 * 13 12 11 41 41 H 0.96995 * 119.99775 * 180.02562 * 18 17 15 42 42 H 1.08997 * 113.76639 * 221.14963 * 23 14 13 43 43 H 1.08998 * 113.76570 * 89.75452 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1266 1.2415 0.9526 5 6 3.9083 2.4352 1.0320 6 6 5.0104 2.2545 2.0777 7 6 5.8468 3.5328 2.1631 8 6 6.9320 3.3551 3.1936 9 8 7.0267 2.3093 3.8003 10 7 7.7966 4.3588 3.4417 11 6 8.8512 4.1862 4.4439 12 6 9.6877 5.4645 4.5292 13 6 9.1119 6.5189 5.4919 14 7 9.9474 5.8785 6.5295 15 6 9.8842 5.7945 7.8948 16 1 10.5779 5.1630 8.4298 17 6 8.9283 6.5212 8.5913 18 7 8.0200 7.2123 7.9355 19 14 8.9309 6.5185 10.4594 20 1 9.6790 7.7016 10.9550 21 1 7.5326 6.5732 10.9564 22 1 9.5831 5.2785 10.9516 23 6 10.8753 5.3641 5.5036 24 1 -0.5399 -0.9354 0.0004 25 1 -0.5400 0.9352 0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3854 2.1162 0.2659 28 1 2.4754 1.4869 -0.9927 29 1 3.2687 3.2699 1.3191 30 1 4.3585 2.6398 0.0607 31 1 5.6500 1.4199 1.7911 32 1 4.5597 2.0501 3.0489 33 1 5.2069 4.3673 2.4501 34 1 6.2974 3.7377 1.1920 35 1 7.7202 5.1957 2.9573 36 1 9.4914 3.3519 4.1576 37 1 8.3999 3.9815 5.4146 38 1 9.9554 5.8632 3.5507 39 1 9.4113 7.5399 5.2552 40 1 8.0404 6.4176 5.6646 41 1 7.3524 7.7203 8.4222 42 1 11.2090 4.3426 5.6857 43 1 11.6937 6.0452 5.2704 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692290598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:43 Heat of formation + Delta-G solvation = -20.181020 kcal Electronic energy + Delta-G solvation = -21201.441265 eV Core-core repulsion = 17862.898940 eV Total energy + Delta-G solvation = -3338.542324 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.59724 -38.43987 -37.96590 -34.69845 -34.16719 -33.18843 -32.12427 -28.93423 -27.58933 -26.09202 -25.12191 -24.76996 -22.46766 -21.81865 -20.30926 -20.07440 -18.67267 -17.13628 -16.75740 -16.71392 -16.49259 -15.77753 -15.57477 -15.30504 -14.88738 -14.35449 -14.16374 -13.72914 -13.54528 -13.30120 -12.77791 -12.62696 -12.56770 -12.23050 -12.03033 -11.47462 -11.40263 -11.20684 -11.10557 -11.02684 -10.99944 -10.70822 -10.47792 -10.14379 -9.92938 -9.75383 -9.64993 -9.60365 -9.40053 -8.77389 -8.66154 -6.84948 -5.76498 -3.07163 1.78365 2.89155 3.25183 3.41217 3.46486 3.48464 3.69491 4.48446 4.57058 4.73119 4.75251 4.80466 4.99251 5.01554 5.13124 5.18922 5.21852 5.24524 5.31624 5.35422 5.39843 5.49156 5.51092 5.63642 5.99202 6.00010 6.16035 6.16856 6.18623 6.27951 6.34391 6.53703 6.64434 6.69154 6.82968 6.94740 7.20690 7.29564 7.58198 7.79998 7.99693 8.50037 9.06549 9.72886 10.62242 11.41356 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023002 B = 0.002482 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.970832 B =11277.147046 C =12029.226761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.088 3.912 4 O -0.384 6.384 5 C 0.063 3.937 6 C -0.103 4.103 7 C -0.137 4.137 8 C 0.509 3.491 9 O -0.543 6.543 10 N -0.723 5.723 11 C 0.148 3.852 12 C -0.156 4.156 13 C 0.169 3.831 14 N -0.611 5.611 15 C -0.222 4.222 16 H 0.080 0.920 17 C -0.008 4.008 18 N -0.920 5.920 19 Si 0.909 3.091 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.126 3.874 24 H 0.104 0.896 25 H 0.097 0.903 26 H 0.117 0.883 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.398 0.602 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.028 0.972 40 H 0.070 0.930 41 H 0.253 0.747 42 H 0.045 0.955 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.539 -7.082 -19.741 23.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.169 4.169 3 C 0.011 3.989 4 O -0.303 6.303 5 C -0.014 4.014 6 C -0.141 4.141 7 C -0.178 4.178 8 C 0.295 3.705 9 O -0.421 6.421 10 N -0.374 5.374 11 C 0.025 3.975 12 C -0.176 4.176 13 C 0.043 3.957 14 N -0.338 5.338 15 C -0.350 4.350 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.567 5.567 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.000 4.000 24 H 0.122 0.878 25 H 0.116 0.884 26 H 0.135 0.865 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.232 0.768 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.046 0.954 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.550 -7.938 -18.846 22.570 hybrid contribution -0.018 0.974 0.659 1.176 sum -9.568 -6.964 -18.188 21.699 Atomic orbital electron populations 1.23845 0.95576 1.02292 1.00182 1.22773 0.95666 0.98313 1.00137 1.21532 0.89034 0.95833 0.92474 1.87929 1.44547 1.37403 1.60415 1.22544 0.92895 0.87097 0.98854 1.21206 0.95759 0.97398 0.99780 1.21536 0.96920 1.00039 0.99264 1.20476 0.82463 0.83805 0.83751 1.90714 1.72921 1.27535 1.50883 1.46043 1.32350 1.17032 1.41979 1.21064 0.88028 0.96339 0.92095 1.23466 0.98797 0.97341 0.97961 1.22286 0.97596 0.92108 0.83674 1.46031 1.25426 1.61132 1.01197 1.19034 1.14220 1.21757 0.79968 0.90245 1.24809 0.98308 0.99364 0.97963 1.69825 1.17933 1.35127 1.33859 0.86141 0.76929 0.77661 0.85349 1.21698 1.21725 1.20525 1.22531 0.92328 0.97436 0.87755 0.87785 0.88423 0.86532 0.92794 0.92403 0.93140 0.93249 0.90321 0.90150 0.88673 0.88940 0.76802 0.92357 0.90096 0.91577 0.95427 0.91140 0.93725 0.93680 0.94562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 14.31 29.01 0.42 -0.77 16 2 C -0.15 -1.19 9.89 -36.02 -0.36 -1.55 16 3 C 0.09 0.72 6.35 36.01 0.23 0.95 16 4 O -0.38 -4.25 10.33 -35.23 -0.36 -4.62 16 5 C 0.06 0.57 5.94 37.16 0.22 0.79 16 6 C -0.10 -1.16 4.87 -26.73 -0.13 -1.29 16 7 C -0.14 -1.38 5.70 -27.88 -0.16 -1.54 16 8 C 0.51 7.62 7.83 -10.99 -0.09 7.53 16 9 O -0.54 -10.61 15.98 5.56 0.09 -10.52 16 10 N -0.72 -10.42 5.56 -60.29 -0.33 -10.75 16 11 C 0.15 2.61 5.42 -4.04 -0.02 2.59 16 12 C -0.16 -2.75 3.99 -89.69 -0.36 -3.11 16 13 C 0.17 3.83 6.94 -2.84 -0.02 3.81 16 14 N -0.61 -15.58 3.58 -177.70 -0.64 -16.21 16 15 C -0.22 -6.30 10.70 -15.06 -0.16 -6.46 16 16 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 17 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 18 N -0.92 -27.44 11.51 55.49 0.64 -26.80 16 19 Si 0.91 22.53 29.56 -169.99 -5.02 17.50 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.13 2.53 8.51 -2.97 -0.03 2.50 16 24 H 0.10 0.55 8.06 -52.49 -0.42 0.13 16 25 H 0.10 0.55 7.90 -52.49 -0.41 0.13 16 26 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 27 H 0.05 0.39 7.86 -51.93 -0.41 -0.02 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 32 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.40 4.51 8.47 -40.82 -0.35 4.17 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.79 7.98 -51.93 -0.41 1.38 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 1.77 7.32 -51.93 -0.38 1.39 16 41 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.05 0.87 8.10 -51.93 -0.42 0.45 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 363.16 15.07 5.47 5.47 Total: -1.00 -34.42 363.16 -8.13 -42.55 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -7.42 Total: 0.24 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -0.55 Total: 3.13 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.33 Total: -53.76 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.27 Total: -15.14 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.42 -8.13 -42.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692290598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.369 kcal (2) G-P(sol) polarization free energy of solvation -34.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds