Wall clock time and date at job start Tue Mar 31 2020 06:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50700 * 119.99751 * 2 1 4 4 O 1.42903 * 109.46997 * 134.99782 * 3 2 1 5 5 C 1.42897 * 114.00180 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47192 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00137 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99857 * 179.97438 * 6 5 4 9 9 C 1.46923 * 120.63295 * 354.93484 * 8 6 5 10 10 C 1.53191 * 108.77515 * 233.62899 * 9 8 6 11 11 C 1.53041 * 109.31248 * 305.35981 * 10 9 8 12 12 H 1.09003 * 109.45038 * 181.37401 * 11 10 9 13 13 N 1.46498 * 109.46092 * 301.34726 * 11 10 9 14 14 C 1.36932 * 119.99981 * 275.06423 * 13 11 10 15 15 H 1.08005 * 120.00098 * 0.02562 * 14 13 11 16 16 C 1.38809 * 120.00002 * 180.02562 * 14 13 11 17 17 N 1.31614 * 120.00352 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00057 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47215 * 89.99619 * 18 16 14 20 20 H 1.48497 * 109.47006 * 209.99978 * 18 16 14 21 21 H 1.48499 * 109.46893 * 329.99905 * 18 16 14 22 22 C 1.53050 * 109.53299 * 61.36641 * 11 10 9 23 23 C 1.46999 * 120.61499 * 174.95094 * 8 6 5 24 24 H 1.08992 * 109.57999 * 246.15330 * 23 8 6 25 25 C 1.53007 * 109.62644 * 6.60019 * 23 8 6 26 26 H 1.08000 * 119.99782 * 179.97438 * 1 2 3 27 27 H 1.07994 * 119.99944 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.99944 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47327 * 14.99921 * 3 2 1 30 30 H 1.09002 * 109.47168 * 254.99842 * 3 2 1 31 31 H 1.09001 * 109.47504 * 59.99735 * 5 4 3 32 32 H 1.09005 * 109.47005 * 300.00218 * 5 4 3 33 33 H 1.08993 * 109.58891 * 113.83708 * 9 8 6 34 34 H 1.09005 * 109.70192 * 353.48073 * 9 8 6 35 35 H 1.09001 * 109.49668 * 185.41106 * 10 9 8 36 36 H 1.08998 * 109.52538 * 65.32652 * 10 9 8 37 37 H 0.97005 * 119.99780 * 95.06710 * 13 11 10 38 38 H 0.96996 * 120.00622 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.49656 * 58.58753 * 22 11 10 40 40 H 1.09002 * 109.49303 * 178.65170 * 22 11 10 41 41 H 1.09003 * 109.46942 * 175.69190 * 25 23 8 42 42 H 1.09000 * 109.47189 * 295.69168 * 25 23 8 43 43 H 1.09000 * 109.47135 * 55.68904 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9077 2.4353 1.0330 6 6 4.9940 2.2568 2.0621 7 8 5.0902 1.2100 2.6669 8 7 5.8592 3.2602 2.3096 9 6 5.8266 4.4915 1.5087 10 6 7.2284 4.7525 0.9486 11 6 8.2367 4.7780 2.0996 12 1 9.2314 4.9878 1.7062 13 7 7.8597 5.8219 3.0557 14 6 8.2586 7.1155 2.8497 15 1 8.8509 7.3663 1.9820 16 6 7.9018 8.1045 3.7559 17 7 7.1797 7.7991 4.8130 18 14 8.4454 9.8694 3.4745 19 1 7.4188 10.5816 2.6720 20 1 8.6112 10.5510 4.7833 21 1 9.7385 9.8786 2.7443 22 6 8.2433 3.4193 2.8042 23 6 6.8535 3.1429 3.3860 24 1 6.6332 3.8699 4.1675 25 6 6.8140 1.7293 3.9703 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3855 2.1161 0.2660 30 1 2.4756 1.4868 -0.9927 31 1 3.2677 3.2695 1.3206 32 1 4.3580 2.6409 0.0618 33 1 5.5226 5.3284 2.1373 34 1 5.1202 4.3765 0.6865 35 1 7.2410 5.7125 0.4326 36 1 7.4946 3.9600 0.2492 37 1 7.3274 5.5967 3.8348 38 1 6.9300 8.4903 5.4461 39 1 8.4997 2.6391 2.0876 40 1 8.9788 3.4304 3.6087 41 1 7.6029 1.6217 4.7147 42 1 5.8454 1.5572 4.4398 43 1 6.9654 1.0021 3.1726 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699731017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:34 Heat of formation + Delta-G solvation = -30.380434 kcal Electronic energy + Delta-G solvation = -22936.508700 eV Core-core repulsion = 19597.524096 eV Total energy + Delta-G solvation = -3338.984604 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.31496 -38.24044 -37.12697 -34.19281 -34.09759 -32.65493 -31.91813 -29.23438 -28.24245 -26.85466 -25.65380 -24.06659 -23.47226 -21.80041 -20.42952 -19.83816 -18.31079 -17.23671 -17.13875 -16.50046 -16.34952 -15.48864 -15.39124 -14.87249 -14.46285 -14.07176 -13.91269 -13.75214 -13.39790 -13.21677 -13.00905 -12.60425 -12.30207 -12.16910 -11.94245 -11.90401 -11.46257 -11.21594 -11.17489 -10.93818 -10.81475 -10.62453 -10.44182 -10.25288 -10.13726 -9.95612 -9.66028 -9.56441 -8.97718 -8.72437 -8.14320 -7.02122 -5.81942 -3.11113 1.87278 2.81973 2.94096 3.39095 3.45126 3.46668 3.87979 4.54599 4.60092 4.82943 4.86648 4.98496 5.08406 5.17509 5.20989 5.26702 5.31940 5.39585 5.49838 5.56693 5.58786 5.69977 5.75624 5.90290 6.01060 6.10191 6.18407 6.29391 6.32938 6.36025 6.40879 6.48708 6.58560 6.73025 6.76910 6.83828 6.92069 7.08806 7.65390 7.73196 8.36469 8.45479 9.47912 10.04577 10.39527 11.40451 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.003746 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.632396 B = 7472.902900 C = 8046.050766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C 0.085 3.915 4 O -0.360 6.360 5 C 0.042 3.958 6 C 0.514 3.486 7 O -0.523 6.523 8 N -0.597 5.597 9 C 0.112 3.888 10 C -0.149 4.149 11 C 0.173 3.827 12 H 0.051 0.949 13 N -0.722 5.722 14 C -0.240 4.240 15 H 0.070 0.930 16 C -0.012 4.012 17 N -0.932 5.932 18 Si 0.905 3.095 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.283 1.283 22 C -0.133 4.133 23 C 0.147 3.853 24 H 0.081 0.919 25 C -0.134 4.134 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.117 0.883 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.041 0.959 42 H 0.067 0.933 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.114 -11.552 -10.191 17.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.165 4.165 3 C 0.009 3.991 4 O -0.278 6.278 5 C -0.037 4.037 6 C 0.300 3.700 7 O -0.400 6.400 8 N -0.332 5.332 9 C -0.010 4.010 10 C -0.190 4.190 11 C 0.063 3.937 12 H 0.069 0.931 13 N -0.365 5.365 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.736 3.264 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.172 4.172 23 C 0.045 3.955 24 H 0.099 0.901 25 C -0.191 4.191 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.135 0.865 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.219 0.781 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.940 -12.102 -9.786 17.471 hybrid contribution 0.004 1.455 -0.176 1.466 sum -7.935 -10.647 -9.962 16.600 Atomic orbital electron populations 1.23831 0.95518 1.02262 1.00341 1.22729 0.95598 0.98229 0.99945 1.21603 0.88947 0.96094 0.92454 1.88024 1.44222 1.35266 1.60305 1.22344 0.93465 0.88829 0.99095 1.20052 0.82332 0.83860 0.83717 1.90753 1.72324 1.27052 1.49895 1.48127 1.33588 1.16773 1.34749 1.21746 0.98245 0.86506 0.94498 1.22509 0.96003 1.01000 0.99508 1.20194 0.95735 0.87882 0.89889 0.93085 1.42520 1.63772 1.03882 1.26294 1.19229 1.27091 0.84635 1.06117 0.91198 1.24726 1.00792 0.98031 0.97269 1.69646 1.42158 1.32558 1.13668 0.86222 0.78112 0.85190 0.76831 1.21796 1.21842 1.20824 1.22248 0.96193 0.98034 1.00763 1.21289 0.87435 0.98468 0.88285 0.90141 1.22205 1.01422 0.94888 1.00559 0.87789 0.88409 0.86467 0.92596 0.92193 0.90339 0.90514 0.89543 0.91495 0.90735 0.93239 0.78123 0.93475 0.92059 0.90708 0.94045 0.91408 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 14.31 29.01 0.42 -1.01 16 2 C -0.15 -1.39 9.89 -36.03 -0.36 -1.75 16 3 C 0.09 0.86 6.35 36.01 0.23 1.08 16 4 O -0.36 -5.01 9.86 -55.14 -0.54 -5.56 16 5 C 0.04 0.54 4.82 36.00 0.17 0.71 16 6 C 0.51 8.30 7.68 -10.99 -0.08 8.22 16 7 O -0.52 -9.97 11.91 -14.35 -0.17 -10.14 16 8 N -0.60 -9.56 2.97 -165.17 -0.49 -10.05 16 9 C 0.11 1.71 6.07 -3.71 -0.02 1.69 16 10 C -0.15 -2.37 5.78 -26.61 -0.15 -2.53 16 11 C 0.17 3.21 3.10 -67.88 -0.21 3.00 16 12 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 13 N -0.72 -16.69 4.31 -53.38 -0.23 -16.92 16 14 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 15 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 16 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -27.05 13.06 55.49 0.72 -26.33 16 18 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.13 -2.20 5.07 -26.61 -0.13 -2.34 16 23 C 0.15 2.51 3.20 -67.56 -0.22 2.29 16 24 H 0.08 1.54 6.64 -51.93 -0.34 1.19 16 25 C -0.13 -2.20 7.60 37.16 0.28 -1.91 16 26 H 0.10 0.67 8.06 -52.49 -0.42 0.24 16 27 H 0.10 0.67 7.90 -52.49 -0.41 0.25 16 28 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 29 H 0.06 0.49 7.86 -51.93 -0.41 0.08 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.87 8.11 -51.93 -0.42 0.45 16 32 H 0.08 0.80 7.48 -51.93 -0.39 0.41 16 33 H 0.09 1.56 7.74 -51.93 -0.40 1.15 16 34 H 0.07 0.80 5.97 -51.93 -0.31 0.49 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.38 9.52 6.06 -40.82 -0.25 9.27 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 1.20 6.77 -51.93 -0.35 0.85 16 43 H 0.07 1.17 6.74 -51.93 -0.35 0.82 16 LS Contribution 342.72 15.07 5.16 5.16 Total: -1.00 -30.70 342.72 -7.88 -38.58 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.99 Total: 8.02 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -0.32 Total: 0.64 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: 0.00 Total: -53.30 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -0.71 Total: -15.70 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.70 -7.88 -38.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699731017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.201 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds