Wall clock time and date at job start Tue Mar 31 2020 06:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50700 * 119.99751 * 2 1 4 4 O 1.42903 * 109.46997 * 134.99782 * 3 2 1 5 5 C 1.42897 * 114.00180 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.47192 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00137 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99857 * 179.97438 * 6 5 4 9 9 C 1.46923 * 120.63295 * 354.93484 * 8 6 5 10 10 C 1.53191 * 108.77515 * 233.62899 * 9 8 6 11 11 C 1.53041 * 109.31248 * 305.35981 * 10 9 8 12 12 H 1.09003 * 109.45038 * 181.37401 * 11 10 9 13 13 N 1.46498 * 109.46092 * 301.34726 * 11 10 9 14 14 C 1.36932 * 119.99981 * 275.06423 * 13 11 10 15 15 H 1.08005 * 120.00098 * 0.02562 * 14 13 11 16 16 C 1.38809 * 120.00002 * 180.02562 * 14 13 11 17 17 N 1.31614 * 120.00352 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 120.00057 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47215 * 89.99619 * 18 16 14 20 20 H 1.48497 * 109.47006 * 209.99978 * 18 16 14 21 21 H 1.48499 * 109.46893 * 329.99905 * 18 16 14 22 22 C 1.53050 * 109.53299 * 61.36641 * 11 10 9 23 23 C 1.46999 * 120.61499 * 174.95094 * 8 6 5 24 24 H 1.08992 * 109.57999 * 246.15330 * 23 8 6 25 25 C 1.53007 * 109.62644 * 6.60019 * 23 8 6 26 26 H 1.08000 * 119.99782 * 179.97438 * 1 2 3 27 27 H 1.07994 * 119.99944 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.99944 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47327 * 14.99921 * 3 2 1 30 30 H 1.09002 * 109.47168 * 254.99842 * 3 2 1 31 31 H 1.09001 * 109.47504 * 59.99735 * 5 4 3 32 32 H 1.09005 * 109.47005 * 300.00218 * 5 4 3 33 33 H 1.08993 * 109.58891 * 113.83708 * 9 8 6 34 34 H 1.09005 * 109.70192 * 353.48073 * 9 8 6 35 35 H 1.09001 * 109.49668 * 185.41106 * 10 9 8 36 36 H 1.08998 * 109.52538 * 65.32652 * 10 9 8 37 37 H 0.97005 * 119.99780 * 95.06710 * 13 11 10 38 38 H 0.96996 * 120.00622 * 180.02562 * 17 16 14 39 39 H 1.08999 * 109.49656 * 58.58753 * 22 11 10 40 40 H 1.09002 * 109.49303 * 178.65170 * 22 11 10 41 41 H 1.09003 * 109.46942 * 175.69190 * 25 23 8 42 42 H 1.09000 * 109.47189 * 295.69168 * 25 23 8 43 43 H 1.09000 * 109.47135 * 55.68904 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9527 5 6 3.9077 2.4353 1.0330 6 6 4.9940 2.2568 2.0621 7 8 5.0902 1.2100 2.6669 8 7 5.8592 3.2602 2.3096 9 6 5.8266 4.4915 1.5087 10 6 7.2284 4.7525 0.9486 11 6 8.2367 4.7780 2.0996 12 1 9.2314 4.9878 1.7062 13 7 7.8597 5.8219 3.0557 14 6 8.2586 7.1155 2.8497 15 1 8.8509 7.3663 1.9820 16 6 7.9018 8.1045 3.7559 17 7 7.1797 7.7991 4.8130 18 14 8.4454 9.8694 3.4745 19 1 7.4188 10.5816 2.6720 20 1 8.6112 10.5510 4.7833 21 1 9.7385 9.8786 2.7443 22 6 8.2433 3.4193 2.8042 23 6 6.8535 3.1429 3.3860 24 1 6.6332 3.8699 4.1675 25 6 6.8140 1.7293 3.9703 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3855 2.1161 0.2660 30 1 2.4756 1.4868 -0.9927 31 1 3.2677 3.2695 1.3206 32 1 4.3580 2.6409 0.0618 33 1 5.5226 5.3284 2.1373 34 1 5.1202 4.3765 0.6865 35 1 7.2410 5.7125 0.4326 36 1 7.4946 3.9600 0.2492 37 1 7.3274 5.5967 3.8348 38 1 6.9300 8.4903 5.4461 39 1 8.4997 2.6391 2.0876 40 1 8.9788 3.4304 3.6087 41 1 7.6029 1.6217 4.7147 42 1 5.8454 1.5572 4.4398 43 1 6.9654 1.0021 3.1726 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699731017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:34 Heat of formation + Delta-G solvation = -48.880772 kcal Electronic energy + Delta-G solvation = -22937.310935 eV Core-core repulsion = 19597.524096 eV Total energy + Delta-G solvation = -3339.786839 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.59887 -39.31174 -38.38972 -35.84829 -34.85212 -34.00204 -33.59414 -30.90691 -29.36726 -28.15613 -26.47552 -25.71801 -25.10633 -23.09553 -21.46804 -20.84960 -19.67663 -19.15214 -18.14747 -17.51436 -17.47563 -16.68383 -16.63611 -16.25154 -15.74364 -15.63364 -15.46069 -14.88354 -14.77816 -14.49117 -14.11940 -13.99541 -13.49592 -13.36328 -13.08452 -13.04919 -12.94297 -12.83193 -12.63953 -12.48040 -12.11343 -11.97778 -11.94012 -11.85279 -11.60302 -11.35437 -10.96018 -10.87746 -10.26991 -10.01453 -9.50627 -8.94279 -7.88894 -5.16183 1.20023 1.50543 1.51356 1.59023 1.59272 1.82521 2.60100 2.92660 3.44801 3.56277 3.87157 3.92435 4.02681 4.08152 4.09153 4.15506 4.22286 4.24986 4.33340 4.38575 4.46021 4.51053 4.61896 4.66976 4.77259 4.84455 4.93329 4.98752 5.07383 5.12821 5.24090 5.27986 5.36495 5.42880 5.59553 5.66718 5.69012 5.74043 6.10820 6.32999 6.49969 7.20576 7.40079 8.16103 8.39355 9.34459 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.003746 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.632396 B = 7472.902900 C = 8046.050766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.175 4.175 3 C 0.082 3.918 4 O -0.392 6.392 5 C 0.047 3.953 6 C 0.507 3.493 7 O -0.558 6.558 8 N -0.597 5.597 9 C 0.117 3.883 10 C -0.141 4.141 11 C 0.165 3.835 12 H 0.049 0.951 13 N -0.731 5.731 14 C -0.229 4.229 15 H 0.077 0.923 16 C -0.075 4.075 17 N -0.970 5.970 18 Si 0.966 3.034 19 H -0.288 1.288 20 H -0.303 1.303 21 H -0.271 1.271 22 C -0.122 4.122 23 C 0.148 3.852 24 H 0.052 0.948 25 C -0.119 4.119 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.054 0.946 34 H 0.108 0.892 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.373 0.627 38 H 0.248 0.752 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.539 -11.751 -12.559 19.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.193 4.193 3 C 0.006 3.994 4 O -0.311 6.311 5 C -0.033 4.033 6 C 0.296 3.704 7 O -0.437 6.437 8 N -0.331 5.331 9 C -0.005 4.005 10 C -0.181 4.181 11 C 0.057 3.943 12 H 0.067 0.933 13 N -0.372 5.372 14 C -0.361 4.361 15 H 0.095 0.905 16 C -0.267 4.267 17 N -0.621 5.621 18 Si 0.796 3.204 19 H -0.215 1.215 20 H -0.230 1.230 21 H -0.196 1.196 22 C -0.161 4.161 23 C 0.045 3.955 24 H 0.070 0.930 25 C -0.176 4.176 26 H 0.135 0.865 27 H 0.128 0.872 28 H 0.127 0.873 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.073 0.927 34 H 0.126 0.874 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.206 0.794 38 H 0.057 0.943 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.351 -12.317 -12.217 19.254 hybrid contribution 0.110 1.414 0.523 1.512 sum -8.240 -10.903 -11.694 17.987 Atomic orbital electron populations 1.24060 0.95019 1.03477 0.97901 1.22780 0.96295 0.97967 1.02251 1.21810 0.88355 0.96709 0.92517 1.87985 1.45390 1.35980 1.61767 1.22366 0.92687 0.89090 0.99114 1.20747 0.82615 0.83105 0.83959 1.90738 1.73195 1.28401 1.51369 1.48149 1.33438 1.17119 1.34400 1.21738 0.98843 0.85082 0.94875 1.22370 0.95342 1.01847 0.98554 1.20445 0.96323 0.87484 0.90068 0.93336 1.42676 1.63555 1.04080 1.26931 1.19597 1.25293 0.85777 1.05405 0.90480 1.25438 1.02024 1.01631 0.97622 1.69805 1.44359 1.33139 1.14843 0.85242 0.78066 0.80986 0.76071 1.21542 1.23019 1.19637 1.22128 0.95667 0.97441 1.00860 1.21148 0.88215 0.97852 0.88314 0.92962 1.22024 1.00819 0.94304 1.00445 0.86549 0.87216 0.87343 0.91300 0.90473 0.88524 0.87462 0.92748 0.87381 0.91197 0.90389 0.79418 0.94336 0.90001 0.91266 0.92901 0.93167 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 14.31 67.77 0.97 -1.29 16 2 C -0.17 -3.07 9.89 25.64 0.25 -2.81 16 3 C 0.08 1.45 6.35 71.24 0.45 1.90 16 4 O -0.39 -10.24 9.86 -129.94 -1.28 -11.52 16 5 C 0.05 1.05 4.82 71.23 0.34 1.40 16 6 C 0.51 15.70 7.68 87.66 0.67 16.37 16 7 O -0.56 -21.09 11.91 16.00 0.19 -20.90 16 8 N -0.60 -18.37 2.97 -794.88 -2.36 -20.73 16 9 C 0.12 3.31 6.07 86.36 0.52 3.83 16 10 C -0.14 -4.12 5.78 30.67 0.18 -3.94 16 11 C 0.17 5.91 3.10 45.02 0.14 6.05 16 12 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 13 N -0.73 -33.86 4.31 -322.80 -1.39 -35.25 16 14 C -0.23 -11.83 9.93 84.03 0.83 -11.00 16 15 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 16 C -0.08 -4.13 5.50 84.86 0.47 -3.66 16 17 N -0.97 -57.61 13.06 21.65 0.28 -57.33 16 18 Si 0.97 44.65 29.55 68.60 2.03 46.67 16 19 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 20 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 21 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 22 C -0.12 -3.90 5.07 30.67 0.16 -3.75 16 23 C 0.15 5.01 3.20 44.96 0.14 5.16 16 24 H 0.05 2.08 6.64 -2.39 -0.02 2.06 16 25 C -0.12 -3.91 7.60 71.98 0.55 -3.36 16 26 H 0.12 1.24 8.06 -2.91 -0.02 1.22 16 27 H 0.11 1.20 7.90 -2.91 -0.02 1.18 16 28 H 0.11 2.03 8.06 -2.91 -0.02 2.00 16 29 H 0.07 1.02 7.86 -2.39 -0.02 1.00 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.10 1.84 8.11 -2.39 -0.02 1.82 16 32 H 0.11 1.76 7.48 -2.38 -0.02 1.75 16 33 H 0.05 1.93 7.74 -2.39 -0.02 1.91 16 34 H 0.11 2.17 5.97 -2.38 -0.01 2.16 16 35 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.37 18.95 6.06 -92.70 -0.56 18.39 16 38 H 0.25 14.47 8.31 -92.71 -0.77 13.69 16 39 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.05 1.82 6.77 -2.39 -0.02 1.80 16 43 H 0.06 2.14 6.74 -2.39 -0.02 2.12 16 Total: -1.00 -67.21 342.72 3.57 -63.64 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 0.42 Total: 30.52 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 5.68 Total: 4.90 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -3.47 Total: -113.31 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.09 Total: -32.42 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -67.21 3.57 -63.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699731017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.758 kcal (2) G-P(sol) polarization free energy of solvation -67.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds