Wall clock time and date at job start Tue Mar 31 2020 06:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99837 * 2 1 4 4 O 1.42903 * 109.47138 * 134.99748 * 3 2 1 5 5 C 1.42898 * 114.00063 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47039 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00053 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99895 * 180.02562 * 6 5 4 9 9 C 1.46927 * 120.63092 * 5.71892 * 8 6 5 10 10 C 1.53195 * 108.77266 * 233.60809 * 9 8 6 11 11 C 1.53039 * 109.31236 * 305.36323 * 10 9 8 12 12 H 1.09002 * 109.46026 * 301.35817 * 11 10 9 13 13 N 1.46500 * 109.46186 * 181.38653 * 11 10 9 14 14 C 1.36939 * 120.00014 * 85.00097 * 13 11 10 15 15 H 1.07997 * 119.99856 * 359.97438 * 14 13 11 16 16 C 1.38815 * 120.00133 * 180.02562 * 14 13 11 17 17 N 1.31617 * 120.00094 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99927 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47016 * 89.99887 * 18 16 14 20 20 H 1.48492 * 109.47391 * 210.00450 * 18 16 14 21 21 H 1.48505 * 109.47154 * 330.00714 * 18 16 14 22 22 C 1.53041 * 109.53978 * 61.36576 * 11 10 9 23 23 C 1.46932 * 120.63096 * 185.71100 * 8 6 5 24 24 H 1.08991 * 109.58901 * 246.17905 * 23 8 6 25 25 C 1.52997 * 109.58257 * 6.60927 * 23 8 6 26 26 H 1.07996 * 120.00531 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.99929 * 180.02562 * 1 2 3 28 28 H 1.07995 * 120.00156 * 179.97438 * 2 1 3 29 29 H 1.09008 * 109.47079 * 15.00198 * 3 2 1 30 30 H 1.09000 * 109.47463 * 254.99907 * 3 2 1 31 31 H 1.09003 * 109.46692 * 60.00570 * 5 4 3 32 32 H 1.08990 * 109.47691 * 300.00565 * 5 4 3 33 33 H 1.08996 * 109.59023 * 113.82365 * 9 8 6 34 34 H 1.09001 * 109.58442 * 353.39016 * 9 8 6 35 35 H 1.09001 * 109.49678 * 185.41522 * 10 9 8 36 36 H 1.09003 * 109.49956 * 65.31390 * 10 9 8 37 37 H 0.96996 * 120.00437 * 265.00204 * 13 11 10 38 38 H 0.96998 * 119.99689 * 179.97438 * 17 16 14 39 39 H 1.08995 * 109.49688 * 58.58469 * 22 11 10 40 40 H 1.09006 * 109.49795 * 178.68438 * 22 11 10 41 41 H 1.09001 * 109.46883 * 173.75364 * 25 23 8 42 42 H 1.09003 * 109.47461 * 293.75140 * 25 23 8 43 43 H 1.08999 * 109.47921 * 53.75569 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9083 2.4349 1.0321 6 6 4.9945 2.2565 2.0613 7 8 5.0902 1.2100 2.6669 8 7 5.8597 3.2598 2.3089 9 6 5.6824 4.5743 1.6768 10 6 6.9839 4.9593 0.9664 11 6 8.1434 4.8924 1.9630 12 1 7.9457 5.5671 2.7960 13 7 9.3846 5.2921 1.2952 14 6 9.7150 6.6177 1.2006 15 1 9.0603 7.3684 1.6178 16 6 10.8908 6.9964 0.5674 17 7 11.2086 8.2704 0.4768 18 14 12.0228 5.6978 -0.1549 19 1 11.6395 5.4363 -1.5655 20 1 13.4260 6.1809 -0.1045 21 1 11.9025 4.4436 0.6312 22 6 8.2849 3.4620 2.4883 23 6 6.9981 3.0599 3.2161 24 1 6.8713 3.6798 4.1035 25 6 7.0776 1.5871 3.6225 26 1 -0.5401 0.9352 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8500 -0.9352 0.0004 29 1 1.3854 2.1161 0.2660 30 1 2.4755 1.4868 -0.9926 31 1 3.2688 3.2696 1.3193 32 1 4.3586 2.6397 0.0609 33 1 5.4483 5.3176 2.4389 34 1 4.8709 4.5241 0.9508 35 1 6.8985 5.9731 0.5751 36 1 7.1692 4.2664 0.1456 37 1 9.9724 4.6178 0.9202 38 1 12.0304 8.5350 0.0347 39 1 8.4578 2.7832 1.6533 40 1 9.1255 3.4100 3.1803 41 1 7.9839 1.4191 4.2042 42 1 6.2063 1.3287 4.2245 43 1 7.0991 0.9640 2.7284 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699731018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:38 Heat of formation + Delta-G solvation = -29.877931 kcal Electronic energy + Delta-G solvation = -22578.160730 eV Core-core repulsion = 19239.197916 eV Total energy + Delta-G solvation = -3338.962814 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.51127 -38.34719 -37.24882 -34.68043 -34.20450 -32.87573 -31.98928 -29.94755 -28.42363 -27.04971 -25.78444 -24.32087 -22.76156 -21.80128 -20.46634 -20.17447 -19.04014 -17.64105 -17.28636 -16.64408 -16.60088 -15.69915 -15.54332 -14.89611 -14.68636 -14.28972 -14.05946 -13.77459 -13.50413 -13.41203 -13.00347 -12.64265 -12.45326 -12.33082 -12.27534 -12.04660 -11.88267 -11.49433 -11.29221 -11.05758 -10.98156 -10.87308 -10.56079 -10.32087 -10.25604 -9.95605 -9.66547 -9.64187 -8.99390 -8.97210 -8.50541 -7.33701 -5.82356 -3.18376 1.78625 2.58690 2.72885 3.34125 3.37687 3.42482 3.69860 4.42346 4.54637 4.70013 4.76174 4.83049 4.91317 4.97229 4.99645 5.07258 5.13534 5.16371 5.24023 5.37962 5.47551 5.50876 5.52313 5.71243 5.77057 5.89436 6.00365 6.02248 6.21211 6.21835 6.27326 6.31392 6.34886 6.41381 6.64191 6.75011 6.81923 6.91213 7.44504 7.93017 8.22137 8.36742 9.14857 9.87733 10.07395 11.35769 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026015 B = 0.003413 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.060473 B = 8203.033792 C = 8627.491499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.148 4.148 3 C 0.086 3.914 4 O -0.360 6.360 5 C 0.042 3.958 6 C 0.516 3.484 7 O -0.518 6.518 8 N -0.604 5.604 9 C 0.106 3.894 10 C -0.152 4.152 11 C 0.183 3.817 12 H 0.057 0.943 13 N -0.748 5.748 14 C -0.245 4.245 15 H 0.091 0.909 16 C 0.005 3.995 17 N -0.933 5.933 18 Si 0.884 3.116 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.139 4.139 23 C 0.150 3.850 24 H 0.074 0.926 25 C -0.137 4.137 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.118 0.882 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.361 0.639 38 H 0.260 0.740 39 H 0.062 0.938 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.489 -12.589 0.532 22.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.166 4.166 3 C 0.009 3.991 4 O -0.278 6.278 5 C -0.038 4.038 6 C 0.303 3.697 7 O -0.394 6.394 8 N -0.340 5.340 9 C -0.017 4.017 10 C -0.193 4.193 11 C 0.074 3.926 12 H 0.075 0.925 13 N -0.390 5.390 14 C -0.375 4.375 15 H 0.108 0.892 16 C -0.191 4.191 17 N -0.580 5.580 18 Si 0.714 3.286 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.203 1.203 22 C -0.178 4.178 23 C 0.047 3.953 24 H 0.092 0.908 25 C -0.194 4.194 26 H 0.116 0.884 27 H 0.123 0.877 28 H 0.136 0.864 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.194 0.806 38 H 0.070 0.930 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.063 0.937 42 H 0.094 0.906 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.369 -13.045 0.994 22.551 hybrid contribution 0.889 -0.360 -0.989 1.378 sum -17.480 -13.405 0.005 22.028 Atomic orbital electron populations 1.23833 0.95501 1.02293 1.00246 1.22723 0.95604 0.98224 1.00030 1.21615 0.88819 0.96131 0.92499 1.88026 1.44257 1.35205 1.60356 1.22334 0.93412 0.88912 0.99140 1.20087 0.82358 0.83826 0.83441 1.90756 1.71780 1.27608 1.49288 1.48180 1.26955 1.11986 1.46858 1.21895 0.99179 0.83573 0.97074 1.22655 0.94393 1.02477 0.99807 1.20133 0.86378 0.92668 0.93447 0.92494 1.42796 1.21833 1.05249 1.69107 1.19058 1.04690 0.82470 1.31256 0.89165 1.24676 0.97966 0.95653 1.00777 1.69697 1.25816 1.13956 1.48578 0.86559 0.81001 0.81658 0.79352 1.21140 1.21736 1.20296 1.22354 0.96603 0.98225 1.00627 1.21289 0.84545 0.98067 0.91381 0.90819 1.22196 1.01206 0.93715 1.02315 0.88408 0.87747 0.86431 0.92580 0.92053 0.90410 0.90193 0.90925 0.90593 0.90022 0.92230 0.80626 0.93024 0.91895 0.90451 0.93681 0.90596 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.25 14.31 29.01 0.42 -0.83 16 2 C -0.15 -1.26 9.89 -36.03 -0.36 -1.62 16 3 C 0.09 0.76 6.35 36.00 0.23 0.99 16 4 O -0.36 -4.49 9.86 -55.14 -0.54 -5.03 16 5 C 0.04 0.45 4.77 36.01 0.17 0.62 16 6 C 0.52 7.17 7.58 -10.99 -0.08 7.08 16 7 O -0.52 -8.83 12.07 -14.35 -0.17 -9.00 16 8 N -0.60 -7.90 2.97 -165.22 -0.49 -8.39 16 9 C 0.11 1.23 6.35 -3.71 -0.02 1.20 16 10 C -0.15 -2.30 5.66 -26.61 -0.15 -2.45 16 11 C 0.18 3.25 2.73 -67.89 -0.19 3.06 16 12 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 13 N -0.75 -16.86 4.92 -53.38 -0.26 -17.13 16 14 C -0.24 -6.62 10.41 -15.06 -0.16 -6.77 16 15 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 16 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 17 N -0.93 -28.66 13.97 55.49 0.78 -27.89 16 18 Si 0.88 21.74 27.74 -169.99 -4.71 17.03 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 22 C -0.14 -2.14 4.84 -26.61 -0.13 -2.26 16 23 C 0.15 2.06 3.49 -67.60 -0.24 1.83 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 25 C -0.14 -1.92 7.61 37.16 0.28 -1.64 16 26 H 0.10 0.57 7.90 -52.49 -0.41 0.15 16 27 H 0.10 0.59 8.06 -52.48 -0.42 0.16 16 28 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.06 0.41 7.86 -51.92 -0.41 0.00 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.65 7.71 -51.93 -0.40 0.25 16 32 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16 33 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 35 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.36 8.16 5.66 -40.82 -0.23 7.92 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.08 1.14 6.57 -51.93 -0.34 0.80 16 43 H 0.06 0.98 6.93 -51.93 -0.36 0.63 16 LS Contribution 343.93 15.07 5.18 5.18 Total: -1.00 -32.70 343.93 -7.66 -40.36 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.11 Total: 5.62 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -0.32 Total: -0.75 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.02 Total: -53.41 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.72 Total: -14.03 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.70 -7.66 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699731018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.479 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds