Wall clock time and date at job start Tue Mar 31 2020 06:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99837 * 2 1 4 4 O 1.42903 * 109.47138 * 134.99748 * 3 2 1 5 5 C 1.42898 * 114.00063 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47039 * 180.02562 * 5 4 3 7 7 O 1.21282 * 120.00053 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99895 * 180.02562 * 6 5 4 9 9 C 1.46927 * 120.63092 * 5.71892 * 8 6 5 10 10 C 1.53195 * 108.77266 * 233.60809 * 9 8 6 11 11 C 1.53039 * 109.31236 * 305.36323 * 10 9 8 12 12 H 1.09002 * 109.46026 * 301.35817 * 11 10 9 13 13 N 1.46500 * 109.46186 * 181.38653 * 11 10 9 14 14 C 1.36939 * 120.00014 * 85.00097 * 13 11 10 15 15 H 1.07997 * 119.99856 * 359.97438 * 14 13 11 16 16 C 1.38815 * 120.00133 * 180.02562 * 14 13 11 17 17 N 1.31617 * 120.00094 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99927 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47016 * 89.99887 * 18 16 14 20 20 H 1.48492 * 109.47391 * 210.00450 * 18 16 14 21 21 H 1.48505 * 109.47154 * 330.00714 * 18 16 14 22 22 C 1.53041 * 109.53978 * 61.36576 * 11 10 9 23 23 C 1.46932 * 120.63096 * 185.71100 * 8 6 5 24 24 H 1.08991 * 109.58901 * 246.17905 * 23 8 6 25 25 C 1.52997 * 109.58257 * 6.60927 * 23 8 6 26 26 H 1.07996 * 120.00531 * 359.97438 * 1 2 3 27 27 H 1.08005 * 119.99929 * 180.02562 * 1 2 3 28 28 H 1.07995 * 120.00156 * 179.97438 * 2 1 3 29 29 H 1.09008 * 109.47079 * 15.00198 * 3 2 1 30 30 H 1.09000 * 109.47463 * 254.99907 * 3 2 1 31 31 H 1.09003 * 109.46692 * 60.00570 * 5 4 3 32 32 H 1.08990 * 109.47691 * 300.00565 * 5 4 3 33 33 H 1.08996 * 109.59023 * 113.82365 * 9 8 6 34 34 H 1.09001 * 109.58442 * 353.39016 * 9 8 6 35 35 H 1.09001 * 109.49678 * 185.41522 * 10 9 8 36 36 H 1.09003 * 109.49956 * 65.31390 * 10 9 8 37 37 H 0.96996 * 120.00437 * 265.00204 * 13 11 10 38 38 H 0.96998 * 119.99689 * 179.97438 * 17 16 14 39 39 H 1.08995 * 109.49688 * 58.58469 * 22 11 10 40 40 H 1.09006 * 109.49795 * 178.68438 * 22 11 10 41 41 H 1.09001 * 109.46883 * 173.75364 * 25 23 8 42 42 H 1.09003 * 109.47461 * 293.75140 * 25 23 8 43 43 H 1.08999 * 109.47921 * 53.75569 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1266 1.2413 0.9527 5 6 3.9083 2.4349 1.0321 6 6 4.9945 2.2565 2.0613 7 8 5.0902 1.2100 2.6669 8 7 5.8597 3.2598 2.3089 9 6 5.6824 4.5743 1.6768 10 6 6.9839 4.9593 0.9664 11 6 8.1434 4.8924 1.9630 12 1 7.9457 5.5671 2.7960 13 7 9.3846 5.2921 1.2952 14 6 9.7150 6.6177 1.2006 15 1 9.0603 7.3684 1.6178 16 6 10.8908 6.9964 0.5674 17 7 11.2086 8.2704 0.4768 18 14 12.0228 5.6978 -0.1549 19 1 11.6395 5.4363 -1.5655 20 1 13.4260 6.1809 -0.1045 21 1 11.9025 4.4436 0.6312 22 6 8.2849 3.4620 2.4883 23 6 6.9981 3.0599 3.2161 24 1 6.8713 3.6798 4.1035 25 6 7.0776 1.5871 3.6225 26 1 -0.5401 0.9352 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8500 -0.9352 0.0004 29 1 1.3854 2.1161 0.2660 30 1 2.4755 1.4868 -0.9926 31 1 3.2688 3.2696 1.3193 32 1 4.3586 2.6397 0.0609 33 1 5.4483 5.3176 2.4389 34 1 4.8709 4.5241 0.9508 35 1 6.8985 5.9731 0.5751 36 1 7.1692 4.2664 0.1456 37 1 9.9724 4.6178 0.9202 38 1 12.0304 8.5350 0.0347 39 1 8.4578 2.7832 1.6533 40 1 9.1255 3.4100 3.1803 41 1 7.9839 1.4191 4.2042 42 1 6.2063 1.3287 4.2245 43 1 7.0991 0.9640 2.7284 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699731018.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:38 Heat of formation + Delta-G solvation = -51.012122 kcal Electronic energy + Delta-G solvation = -22579.077177 eV Core-core repulsion = 19239.197916 eV Total energy + Delta-G solvation = -3339.879261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.58957 -39.27473 -38.39727 -36.26796 -34.85766 -34.05412 -33.72938 -31.57114 -29.39055 -28.19806 -26.49552 -25.85103 -24.26690 -22.96544 -21.69952 -21.01547 -20.20742 -19.46326 -18.18685 -17.55936 -17.45630 -16.73622 -16.65950 -16.39396 -15.94550 -15.61403 -15.19346 -14.92865 -14.71866 -14.64500 -14.29305 -13.89247 -13.84798 -13.43672 -13.13974 -13.08350 -13.00286 -12.94332 -12.69940 -12.57860 -12.09505 -12.03615 -11.96523 -11.87153 -11.77928 -11.37495 -10.96223 -10.92583 -10.27491 -10.07149 -9.61344 -9.30068 -8.00671 -5.33404 1.19842 1.39041 1.40400 1.47975 1.56561 1.80058 2.49278 2.91467 3.30896 3.47458 3.56218 3.84302 3.99079 4.05144 4.09280 4.16617 4.20526 4.26087 4.27651 4.32768 4.46562 4.56185 4.59633 4.61242 4.62047 4.76515 4.82655 4.98539 5.00072 5.05078 5.13400 5.24979 5.39678 5.49379 5.66179 5.67264 5.71967 5.79899 6.10225 6.23592 6.43591 7.09525 7.18800 7.86400 8.04279 9.20628 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.026015 B = 0.003413 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.060473 B = 8203.033792 C = 8627.491499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.177 4.177 3 C 0.083 3.917 4 O -0.393 6.393 5 C 0.043 3.957 6 C 0.510 3.490 7 O -0.556 6.556 8 N -0.603 5.603 9 C 0.113 3.887 10 C -0.144 4.144 11 C 0.175 3.825 12 H 0.049 0.951 13 N -0.753 5.753 14 C -0.222 4.222 15 H 0.063 0.937 16 C -0.064 4.064 17 N -0.983 5.983 18 Si 0.950 3.050 19 H -0.281 1.281 20 H -0.299 1.299 21 H -0.255 1.255 22 C -0.127 4.127 23 C 0.152 3.848 24 H 0.085 0.915 25 C -0.125 4.125 26 H 0.112 0.888 27 H 0.115 0.885 28 H 0.105 0.895 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.363 0.637 38 H 0.256 0.744 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.213 -13.710 0.138 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.195 4.195 3 C 0.007 3.993 4 O -0.313 6.313 5 C -0.036 4.036 6 C 0.298 3.702 7 O -0.435 6.435 8 N -0.338 5.338 9 C -0.010 4.010 10 C -0.184 4.184 11 C 0.067 3.933 12 H 0.067 0.933 13 N -0.395 5.395 14 C -0.353 4.353 15 H 0.081 0.919 16 C -0.256 4.256 17 N -0.634 5.634 18 Si 0.778 3.222 19 H -0.207 1.207 20 H -0.226 1.226 21 H -0.180 1.180 22 C -0.166 4.166 23 C 0.049 3.951 24 H 0.103 0.897 25 C -0.182 4.182 26 H 0.130 0.870 27 H 0.133 0.867 28 H 0.124 0.876 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.126 0.874 32 H 0.117 0.883 33 H 0.104 0.896 34 H 0.130 0.870 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.195 0.805 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.147 -14.200 0.610 24.656 hybrid contribution 1.296 -0.015 -0.806 1.526 sum -18.851 -14.215 -0.196 23.611 Atomic orbital electron populations 1.24057 0.94966 1.03521 0.97783 1.22777 0.96339 0.97997 1.02372 1.21794 0.88362 0.96730 0.92388 1.87986 1.45382 1.36297 1.61602 1.22417 0.92942 0.89403 0.98831 1.20720 0.82790 0.83117 0.83523 1.90745 1.72931 1.29015 1.50805 1.48226 1.26567 1.12480 1.46541 1.21955 0.98069 0.83010 0.97934 1.22450 0.95151 1.01698 0.99146 1.20399 0.85410 0.93844 0.93603 0.93255 1.42850 1.23682 1.03458 1.69559 1.19028 1.03474 0.83928 1.28867 0.91933 1.25434 1.00079 0.97603 1.02447 1.69868 1.26544 1.16282 1.50743 0.85481 0.78151 0.79758 0.78797 1.20714 1.22638 1.17954 1.22210 0.97633 0.96276 1.00509 1.21233 0.84152 0.97998 0.91767 0.89737 1.22027 1.01298 0.93476 1.01415 0.86975 0.86711 0.87643 0.90757 0.90949 0.87365 0.88252 0.89586 0.86989 0.91485 0.92436 0.80464 0.93494 0.92264 0.90548 0.92463 0.91646 0.93638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 14.31 67.78 0.97 -0.96 16 2 C -0.18 -2.79 9.89 25.65 0.25 -2.54 16 3 C 0.08 1.28 6.35 71.23 0.45 1.73 16 4 O -0.39 -9.08 9.86 -129.94 -1.28 -10.36 16 5 C 0.04 0.79 4.77 71.24 0.34 1.13 16 6 C 0.51 13.10 7.58 87.66 0.66 13.77 16 7 O -0.56 -18.52 12.07 16.00 0.19 -18.33 16 8 N -0.60 -14.29 2.97 -795.02 -2.36 -16.65 16 9 C 0.11 2.24 6.35 86.36 0.55 2.79 16 10 C -0.14 -4.07 5.66 30.67 0.17 -3.89 16 11 C 0.18 5.98 2.73 45.02 0.12 6.10 16 12 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 13 N -0.75 -33.23 4.92 -322.81 -1.59 -34.82 16 14 C -0.22 -12.05 10.41 84.03 0.87 -11.18 16 15 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 16 C -0.06 -3.70 5.50 84.86 0.47 -3.23 16 17 N -0.98 -61.82 13.97 21.65 0.30 -61.52 16 18 Si 0.95 44.90 27.74 68.60 1.90 46.81 16 19 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 20 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 21 H -0.25 -10.95 6.52 99.48 0.65 -10.30 16 22 C -0.13 -3.70 4.84 30.67 0.15 -3.55 16 23 C 0.15 3.90 3.49 44.97 0.16 4.05 16 24 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 25 C -0.12 -3.37 7.61 71.98 0.55 -2.82 16 26 H 0.11 0.96 7.90 -2.91 -0.02 0.94 16 27 H 0.11 1.05 8.06 -2.91 -0.02 1.03 16 28 H 0.11 1.85 8.06 -2.91 -0.02 1.83 16 29 H 0.07 0.84 7.86 -2.38 -0.02 0.82 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.11 1.32 7.71 -2.39 -0.02 1.30 16 32 H 0.10 1.44 7.92 -2.39 -0.02 1.42 16 33 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.11 1.48 5.93 -2.39 -0.01 1.47 16 35 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.36 15.74 5.66 -92.71 -0.52 15.22 16 38 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 41 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.92 6.57 -2.39 -0.02 1.90 16 43 H 0.04 1.38 6.93 -2.39 -0.02 1.37 16 Total: -1.00 -72.26 343.93 3.28 -68.98 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: 0.40 Total: 24.48 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 5.72 Total: 1.41 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -3.65 Total: -112.99 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -1.09 Total: -28.69 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.90 Total: 46.81 kcal Total: -72.26 3.28 -68.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699731018.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.969 kcal (2) G-P(sol) polarization free energy of solvation -72.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds