Wall clock time and date at job start Tue Mar 31 2020 06:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 115.55509 * 2 1 4 4 C 1.53000 * 117.49586 * 145.70246 * 2 1 3 5 5 C 1.53001 * 60.00202 * 107.48881 * 4 2 1 6 6 H 1.08997 * 117.52450 * 252.51970 * 5 4 2 7 7 C 1.50703 * 117.49485 * 107.48818 * 5 4 2 8 8 O 1.21286 * 119.99692 * 291.37562 * 7 5 4 9 9 N 1.34770 * 120.00033 * 111.38406 * 7 5 4 10 10 C 1.46498 * 120.00037 * 179.97438 * 9 7 5 11 11 C 1.53003 * 109.47208 * 185.05192 * 10 9 7 12 12 N 1.46507 * 109.54105 * 305.13969 * 11 10 9 13 13 C 1.36932 * 120.00273 * 302.36638 * 12 11 10 14 14 H 1.08002 * 120.00052 * 353.93438 * 13 12 11 15 15 C 1.38807 * 120.00166 * 173.93894 * 13 12 11 16 16 N 1.31626 * 120.00324 * 179.97438 * 15 13 12 17 17 Si 1.86793 * 120.00050 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47358 * 90.00097 * 17 15 13 19 19 H 1.48499 * 109.47593 * 210.00178 * 17 15 13 20 20 H 1.48497 * 109.47267 * 330.00294 * 17 15 13 21 21 C 1.53177 * 109.54469 * 184.87759 * 11 10 9 22 22 C 1.53093 * 109.16388 * 183.14923 * 21 11 10 23 23 O 1.42906 * 109.41008 * 57.60888 * 22 21 11 24 24 C 1.42896 * 114.09726 * 298.83817 * 23 22 21 25 25 C 1.53090 * 109.41671 * 61.16481 * 24 23 22 26 26 H 1.08999 * 109.47601 * 205.67315 * 1 2 3 27 27 H 1.09006 * 109.47211 * 325.68031 * 1 2 3 28 28 H 1.09008 * 109.47095 * 85.67176 * 1 2 3 29 29 H 1.09004 * 117.50179 * 0.02562 * 4 2 1 30 30 H 1.08996 * 117.50243 * 214.98371 * 4 2 1 31 31 H 0.97001 * 119.99817 * 359.97438 * 9 7 5 32 32 H 1.09003 * 109.46982 * 65.04994 * 10 9 7 33 33 H 1.09003 * 109.47346 * 305.05376 * 10 9 7 34 34 H 0.96997 * 119.99668 * 122.36310 * 12 11 10 35 35 H 0.96995 * 120.00326 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.52321 * 303.05648 * 21 11 10 37 37 H 1.09004 * 109.52413 * 63.24177 * 21 11 10 38 38 H 1.08994 * 109.48236 * 297.62519 * 22 21 11 39 39 H 1.09000 * 109.48051 * 177.58916 * 22 21 11 40 40 H 1.08999 * 109.48356 * 301.17588 * 24 23 22 41 41 H 1.09004 * 109.49189 * 181.14849 * 24 23 22 42 42 H 1.09002 * 109.52472 * 182.48570 * 25 24 23 43 43 H 1.08995 * 109.52426 * 62.29435 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2363 -1.1212 0.7648 5 6 2.2364 -1.1209 -0.7653 6 1 1.6112 -1.8580 -1.2691 7 6 3.5293 -0.7809 -1.4609 8 8 3.9718 0.3468 -1.4010 9 7 4.1937 -1.7298 -2.1496 10 6 5.4503 -1.3992 -2.8263 11 6 5.9295 -2.6087 -3.6316 12 7 6.0276 -3.7757 -2.7514 13 6 6.8279 -3.7307 -1.6412 14 1 7.4614 -2.8736 -1.4665 15 6 6.8250 -4.7866 -0.7402 16 7 7.5946 -4.7436 0.3268 17 14 5.7288 -6.2687 -1.0418 18 1 6.4695 -7.2779 -1.8407 19 1 5.3305 -6.8630 0.2595 20 1 4.5149 -5.8438 -1.7841 21 6 7.3023 -2.3074 -4.2408 22 6 7.7380 -3.4913 -5.1081 23 8 6.7547 -3.7276 -6.1178 24 6 5.4624 -4.0608 -5.6070 25 6 4.9352 -2.8998 -4.7598 26 1 -0.3634 -0.9262 0.4452 27 1 -0.3634 0.8488 0.5794 28 1 -0.3634 0.0776 -1.0248 29 1 1.6111 -1.8591 1.2675 30 1 3.1714 -0.8756 1.2682 31 1 3.8399 -2.6317 -2.1973 32 1 6.2039 -1.1348 -2.0844 33 1 5.2903 -0.5557 -3.4981 34 1 5.5256 -4.5803 -2.9551 35 1 7.5923 -5.4813 0.9565 36 1 7.2389 -1.4094 -4.8555 37 1 8.0290 -2.1533 -3.4431 38 1 7.8404 -4.3799 -4.4854 39 1 8.6948 -3.2646 -5.5785 40 1 5.5350 -4.9569 -4.9908 41 1 4.7796 -4.2446 -6.4367 42 1 3.9690 -3.1695 -4.3332 43 1 4.8239 -2.0139 -5.3848 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733471402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:36 Heat of formation + Delta-G solvation = -52.212529 kcal Electronic energy + Delta-G solvation = -23522.970287 eV Core-core repulsion = 20183.038972 eV Total energy + Delta-G solvation = -3339.931315 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.90853 -39.14408 -36.77761 -35.77089 -33.43423 -32.21061 -30.78335 -29.89178 -28.90521 -27.07229 -24.10034 -23.70304 -22.94040 -21.81766 -20.66981 -19.66681 -18.59385 -17.89915 -17.17641 -15.76318 -15.69123 -15.52164 -15.03226 -14.62346 -14.55504 -14.21564 -14.05059 -13.66519 -13.32463 -13.13186 -12.78369 -12.66015 -12.43568 -12.23240 -12.00315 -11.89068 -11.58701 -11.37501 -11.06265 -11.01145 -10.94867 -10.43087 -10.26121 -10.18984 -10.02491 -9.90333 -9.70839 -9.43622 -9.20330 -8.92879 -8.46006 -7.43843 -5.87121 -3.26006 2.88682 3.23581 3.27429 3.35736 3.55536 3.99902 4.23010 4.46714 4.79647 4.85387 4.94065 4.98145 5.08180 5.17218 5.29252 5.33661 5.34615 5.43094 5.54160 5.58913 5.63970 5.67255 5.80612 5.84347 5.94352 5.96170 5.99763 6.07592 6.15413 6.17975 6.24971 6.33009 6.43948 6.51323 6.60117 6.68059 6.99999 7.56502 7.85604 8.03770 8.30518 8.69662 9.06088 9.77888 9.95992 11.30535 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013532 B = 0.006384 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.632007 B = 4385.023736 C = 5527.590749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.127 4.127 3 H 0.115 0.885 4 C -0.147 4.147 5 C -0.188 4.188 6 H 0.118 0.882 7 C 0.539 3.461 8 O -0.556 6.556 9 N -0.698 5.698 10 C 0.122 3.878 11 C 0.195 3.805 12 N -0.738 5.738 13 C -0.242 4.242 14 H 0.092 0.908 15 C 0.012 3.988 16 N -0.928 5.928 17 Si 0.878 3.122 18 H -0.285 1.285 19 H -0.292 1.292 20 H -0.278 1.278 21 C -0.154 4.154 22 C 0.069 3.931 23 O -0.391 6.391 24 C 0.066 3.934 25 C -0.155 4.155 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.401 0.599 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.361 0.639 35 H 0.260 0.740 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.083 0.917 40 H 0.050 0.950 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.994 4.027 -6.845 13.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.146 4.146 3 H 0.133 0.867 4 C -0.184 4.184 5 C -0.209 4.209 6 H 0.136 0.864 7 C 0.325 3.675 8 O -0.436 6.436 9 N -0.347 5.347 10 C -0.004 4.004 11 C 0.104 3.896 12 N -0.382 5.382 13 C -0.371 4.371 14 H 0.110 0.890 15 C -0.185 4.185 16 N -0.574 5.574 17 Si 0.708 3.292 18 H -0.212 1.212 19 H -0.218 1.218 20 H -0.204 1.204 21 C -0.194 4.194 22 C -0.008 4.008 23 O -0.310 6.310 24 C -0.011 4.011 25 C -0.193 4.193 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.236 0.764 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.194 0.806 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.457 4.885 -6.809 13.401 hybrid contribution -0.841 -1.760 0.285 1.972 sum -11.298 3.125 -6.524 13.415 Atomic orbital electron populations 1.21385 0.92591 1.01992 1.01892 1.22343 0.94821 0.95180 1.02214 0.86651 1.23079 1.03113 1.01012 0.91195 1.22280 0.98027 1.04605 0.95990 0.86416 1.19534 0.84676 0.84829 0.78450 1.90645 1.69244 1.21510 1.62181 1.45641 1.24030 1.13024 1.51969 1.21725 0.85646 0.96977 0.96045 1.19801 0.93041 0.87876 0.88887 1.42856 1.55588 1.11469 1.28300 1.18898 1.16532 1.04664 0.97013 0.89044 1.24652 0.99203 0.98130 0.96470 1.69688 1.42019 1.32623 1.13119 0.86683 0.80936 0.84365 0.77205 1.21167 1.21804 1.20408 1.22471 0.99200 0.98019 0.99733 1.22480 0.90327 0.98301 0.89649 1.87824 1.19391 1.90337 1.33445 1.22449 0.84899 0.96317 0.97458 1.22411 0.99138 1.00044 0.97722 0.92473 0.91900 0.92172 0.88033 0.88071 0.76441 0.91179 0.92563 0.80564 0.93000 0.92244 0.89945 0.91705 0.89929 0.93148 0.89746 0.91231 0.90687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 10.19 37.16 0.38 -0.77 16 2 C -0.13 -1.59 5.92 -90.62 -0.54 -2.13 16 3 H 0.12 1.62 7.67 -51.93 -0.40 1.23 16 4 C -0.15 -1.94 9.88 -26.73 -0.26 -2.20 16 5 C -0.19 -2.64 5.91 -91.77 -0.54 -3.18 16 6 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 7 C 0.54 9.56 7.61 -10.99 -0.08 9.48 16 8 O -0.56 -11.67 16.25 5.55 0.09 -11.58 16 9 N -0.70 -12.05 5.12 -60.29 -0.31 -12.35 16 10 C 0.12 2.19 4.29 -4.04 -0.02 2.17 16 11 C 0.20 3.33 0.41 -131.63 -0.05 3.27 16 12 N -0.74 -14.91 3.45 -47.06 -0.16 -15.07 16 13 C -0.24 -6.04 9.18 -15.06 -0.14 -6.18 16 14 H 0.09 2.54 7.00 -52.49 -0.37 2.17 16 15 C 0.01 0.32 5.50 -17.43 -0.10 0.22 16 16 N -0.93 -27.63 13.97 55.49 0.78 -26.86 16 17 Si 0.88 20.45 27.68 -169.99 -4.70 15.75 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.28 -5.90 6.61 56.52 0.37 -5.53 16 21 C -0.15 -2.56 4.85 -26.59 -0.13 -2.69 16 22 C 0.07 1.12 6.68 37.21 0.25 1.37 16 23 O -0.39 -6.30 10.77 -35.23 -0.38 -6.68 16 24 C 0.07 0.94 6.67 37.20 0.25 1.19 16 25 C -0.15 -2.21 4.81 -26.59 -0.13 -2.34 16 26 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.10 1.14 8.05 -51.93 -0.42 0.72 16 30 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 31 H 0.40 6.58 7.45 -40.82 -0.30 6.28 16 32 H 0.07 1.48 7.46 -51.93 -0.39 1.09 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.36 7.24 4.60 -40.82 -0.19 7.05 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.51 7.23 -51.93 -0.38 1.14 16 38 H 0.06 1.19 7.75 -51.93 -0.40 0.79 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.05 0.77 7.05 -51.93 -0.37 0.40 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.07 0.92 7.41 -51.93 -0.38 0.54 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 341.11 15.07 5.14 5.14 Total: -1.00 -30.49 341.11 -7.63 -38.12 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -6.97 Total: 15.31 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -1.11 Total: -1.78 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.30 Total: -54.28 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.29 Total: -18.26 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.70 Total: 15.75 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.49 -7.63 -38.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733471402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.089 kcal (2) G-P(sol) polarization free energy of solvation -30.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds