Wall clock time and date at job start Tue Mar 31 2020 06:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 110.33577 * 2 1 4 4 C 1.54483 * 110.37017 * 122.24908 * 2 1 3 5 5 C 1.54516 * 104.05866 * 142.81113 * 4 2 1 6 6 C 1.54472 * 104.06440 * 359.97438 * 5 4 2 7 7 H 1.08998 * 110.37199 * 94.96718 * 6 5 4 8 8 C 1.53003 * 110.37162 * 217.19159 * 6 5 4 9 9 C 1.52995 * 109.47465 * 185.00229 * 8 6 5 10 10 C 1.50701 * 109.47423 * 179.97438 * 9 8 6 11 11 O 1.21275 * 119.99728 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99757 * 180.02562 * 10 9 8 13 13 C 1.46501 * 119.99796 * 180.02562 * 12 10 9 14 14 C 1.53950 * 113.73850 * 253.73856 * 13 12 10 15 15 N 1.47815 * 86.03341 * 222.08242 * 14 13 12 16 16 C 1.36939 * 134.45658 * 204.64363 * 15 14 13 17 17 H 1.07994 * 120.00529 * 173.34921 * 16 15 14 18 18 C 1.38818 * 119.99662 * 353.34876 * 16 15 14 19 19 N 1.31619 * 120.00243 * 5.06388 * 18 16 15 20 20 Si 1.86796 * 119.99814 * 185.06431 * 18 16 15 21 21 H 1.48503 * 109.47324 * 94.98646 * 20 18 16 22 22 H 1.48502 * 109.47396 * 214.98563 * 20 18 16 23 23 H 1.48502 * 109.47259 * 334.98362 * 20 18 16 24 24 C 1.47575 * 91.05399 * 24.54722 * 15 14 13 25 25 O 1.44418 * 104.80433 * 336.02184 * 6 5 4 26 26 H 1.09000 * 109.47079 * 297.75023 * 1 2 3 27 27 H 1.08997 * 109.46784 * 57.75090 * 1 2 3 28 28 H 1.09004 * 109.46820 * 177.74904 * 1 2 3 29 29 H 1.08994 * 110.51295 * 24.16706 * 4 2 1 30 30 H 1.08997 * 110.51061 * 261.44963 * 4 2 1 31 31 H 1.09005 * 110.50697 * 241.35196 * 5 4 2 32 32 H 1.09005 * 110.62652 * 118.70747 * 5 4 2 33 33 H 1.09006 * 109.47202 * 305.00359 * 8 6 5 34 34 H 1.09005 * 109.47058 * 64.99830 * 8 6 5 35 35 H 1.09006 * 109.47017 * 300.00243 * 9 8 6 36 36 H 1.09005 * 109.47309 * 59.99755 * 9 8 6 37 37 H 0.96996 * 120.00654 * 359.97438 * 12 10 9 38 38 H 1.08999 * 112.94554 * 25.32794 * 13 12 10 39 39 H 1.08999 * 113.76503 * 336.34335 * 14 13 12 40 40 H 1.09004 * 113.76914 * 107.74619 * 14 13 12 41 41 H 0.96997 * 119.99904 * 180.02562 * 19 18 16 42 42 H 1.09001 * 113.77416 * 221.15003 * 24 15 14 43 43 H 1.09004 * 113.87190 * 89.76610 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0677 -0.7728 1.2248 5 6 3.3178 -1.5050 0.6875 6 6 3.3870 -1.0885 -0.7985 7 1 4.0535 -0.2351 -0.9227 8 6 3.8597 -2.2619 -1.6590 9 6 4.0405 -1.7941 -3.1045 10 6 4.5067 -2.9497 -3.9520 11 8 4.6781 -4.0400 -3.4492 12 7 4.7342 -2.7713 -5.2683 13 6 5.1869 -3.8948 -6.0923 14 6 6.6714 -3.8119 -6.4916 15 7 6.2307 -4.2612 -7.8291 16 6 6.8373 -4.9116 -8.8704 17 1 6.2546 -5.2260 -9.7236 18 6 8.2012 -5.1667 -8.8293 19 7 8.8933 -4.8738 -7.7488 20 14 9.0543 -5.9257 -10.3077 21 1 9.6400 -4.8500 -11.1475 22 1 10.1334 -6.8344 -9.8439 23 1 8.0679 -6.6960 -11.1069 24 6 4.8747 -3.7300 -7.5907 25 8 2.0324 -0.7257 -1.1435 26 1 -0.3633 0.4785 0.9095 27 1 -0.3633 0.5484 -0.8691 28 1 -0.3633 -1.0269 -0.0404 29 1 1.3276 -1.4903 1.5788 30 1 2.3430 -0.0818 2.0216 31 1 3.1955 -2.5845 0.7759 32 1 4.2120 -1.1782 1.2182 33 1 4.8101 -2.6337 -1.2760 34 1 3.1175 -3.0595 -1.6253 35 1 3.0901 -1.4223 -3.4875 36 1 4.7828 -0.9966 -3.1382 37 1 4.5975 -1.8992 -5.6704 38 1 4.8949 -4.8637 -5.6872 39 1 7.0738 -2.7989 -6.4790 40 1 7.3067 -4.5299 -5.9729 41 1 9.8463 -5.0517 -7.7203 42 1 4.0780 -4.3827 -7.9479 43 1 4.7462 -2.6931 -7.9012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753398454.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:00 Heat of formation + Delta-G solvation = -44.564814 kcal Electronic energy + Delta-G solvation = -21798.416734 eV Core-core repulsion = 18458.817049 eV Total energy + Delta-G solvation = -3339.599685 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.98028 -39.34536 -37.51657 -33.98413 -33.43562 -32.47712 -31.82245 -30.77391 -27.67834 -26.48415 -24.80640 -23.72359 -22.55354 -21.53127 -21.00420 -19.99049 -19.46360 -16.90406 -16.77286 -16.60266 -16.26448 -15.62294 -15.16881 -15.04636 -14.76446 -14.08390 -13.84557 -13.62026 -13.44660 -13.17434 -12.71338 -12.59140 -12.41726 -11.96129 -11.83687 -11.73947 -11.45287 -11.42878 -11.26186 -11.05014 -10.95918 -10.86488 -10.83729 -10.74764 -10.42381 -10.02874 -9.95060 -9.53288 -9.38280 -8.79684 -8.37555 -6.90014 -5.78357 -3.11295 3.01634 3.39498 3.43635 3.47088 3.56652 3.58144 4.32712 4.37473 4.47511 4.62767 4.68312 4.88630 4.91499 5.04002 5.13552 5.15516 5.21269 5.27135 5.39653 5.44965 5.48210 5.54134 5.57819 5.63270 5.69389 5.73462 5.81282 5.83096 6.02254 6.05800 6.19924 6.24747 6.45261 6.59449 6.70052 6.82825 7.24986 7.38931 7.57111 7.95006 7.97508 8.64231 9.02999 9.69193 10.57230 11.39060 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.052137 B = 0.002512 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.915198 B =11142.818794 C =11450.315422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.067 0.933 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.074 3.926 7 H 0.069 0.931 8 C -0.096 4.096 9 C -0.139 4.139 10 C 0.509 3.491 11 O -0.547 6.547 12 N -0.718 5.718 13 C 0.091 3.909 14 C 0.157 3.843 15 N -0.608 5.608 16 C -0.226 4.226 17 H 0.082 0.918 18 C -0.006 4.006 19 N -0.917 5.917 20 Si 0.913 3.087 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.112 3.888 25 O -0.367 6.367 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.396 0.604 38 H 0.109 0.891 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.255 0.745 42 H 0.048 0.952 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.354 12.415 17.266 25.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.084 0.916 4 C -0.189 4.189 5 C -0.190 4.190 6 C 0.017 3.983 7 H 0.087 0.913 8 C -0.134 4.134 9 C -0.179 4.179 10 C 0.295 3.705 11 O -0.425 6.425 12 N -0.368 5.368 13 C -0.015 4.015 14 C 0.031 3.969 15 N -0.335 5.335 16 C -0.353 4.353 17 H 0.100 0.900 18 C -0.203 4.203 19 N -0.563 5.563 20 Si 0.743 3.257 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.205 1.205 24 C -0.015 4.015 25 O -0.286 6.286 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.230 0.770 38 H 0.127 0.873 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -14.066 11.398 17.242 25.001 hybrid contribution 0.696 0.298 -0.887 1.166 sum -13.370 11.697 16.355 24.147 Atomic orbital electron populations 1.21803 0.93342 1.03005 1.02260 1.22953 0.95267 0.95348 0.85361 0.91557 1.23002 0.97899 0.99770 0.98268 1.22985 0.98306 1.01890 0.95816 1.23060 0.84573 0.97146 0.93539 0.91275 1.21399 1.02717 0.96513 0.92758 1.21653 1.03274 0.97393 0.95612 1.20651 0.77099 0.90014 0.82695 1.90686 1.52231 1.27021 1.72552 1.46167 1.68043 1.13910 1.08676 1.23873 0.98163 0.90040 0.89376 1.22648 0.91551 0.97747 0.84977 1.45723 1.07406 1.64784 1.15551 1.18995 0.90847 1.29200 0.96284 0.90016 1.24863 0.96112 1.01521 0.97850 1.69852 1.07217 1.52646 1.26627 0.86091 0.79356 0.78425 0.81850 1.21585 1.21638 1.20467 1.22868 0.90294 0.96877 0.91456 1.89174 1.27099 1.74260 1.38096 0.91347 0.91879 0.91722 0.90609 0.90769 0.90278 0.90513 0.89732 0.90269 0.88594 0.89217 0.77015 0.87317 0.95236 0.90998 0.93533 0.93348 0.94733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.52 37.16 0.35 -0.63 16 2 C 0.07 0.54 3.92 -25.95 -0.10 0.44 16 3 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 4 C -0.15 -1.04 6.63 -25.16 -0.17 -1.21 16 5 C -0.15 -1.19 6.63 -25.16 -0.17 -1.36 16 6 C 0.07 0.69 3.25 -25.96 -0.08 0.61 16 7 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 8 C -0.10 -1.07 4.13 -26.73 -0.11 -1.18 16 9 C -0.14 -1.58 5.64 -27.88 -0.16 -1.74 16 10 C 0.51 8.09 7.83 -10.99 -0.09 8.01 16 11 O -0.55 -10.97 15.60 5.56 0.09 -10.89 16 12 N -0.72 -11.33 5.37 -55.34 -0.30 -11.62 16 13 C 0.09 1.81 4.40 -70.14 -0.31 1.50 16 14 C 0.16 3.85 7.24 -2.83 -0.02 3.83 16 15 N -0.61 -15.95 3.70 -177.88 -0.66 -16.61 16 16 C -0.23 -6.45 10.70 -15.06 -0.16 -6.61 16 17 H 0.08 2.24 7.83 -52.49 -0.41 1.82 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 19 N -0.92 -27.84 11.51 55.49 0.64 -27.20 16 20 Si 0.91 22.39 29.56 -169.99 -5.02 17.37 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.11 2.29 8.69 -2.97 -0.03 2.27 16 25 O -0.37 -3.89 10.82 -35.23 -0.38 -4.27 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.51 7.87 -51.93 -0.41 0.10 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.66 7.87 -51.93 -0.41 0.25 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.97 8.10 -51.93 -0.42 0.55 16 34 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 35 H 0.10 1.01 8.01 -51.93 -0.42 0.59 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.40 5.04 8.71 -40.82 -0.36 4.69 16 38 H 0.11 2.37 7.51 -51.93 -0.39 1.98 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.99 7.37 -51.93 -0.38 1.61 16 41 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.04 0.65 8.11 -51.93 -0.42 0.23 16 LS Contribution 351.16 15.07 5.29 5.29 Total: -1.00 -34.03 351.16 -8.87 -42.91 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -7.40 Total: 1.39 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -1.13 Total: 3.64 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.32 Total: -55.44 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.29 Total: -15.16 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.03 -8.87 -42.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753398454.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.660 kcal (2) G-P(sol) polarization free energy of solvation -34.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds