Wall clock time and date at job start Tue Mar 31 2020 06:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.27269 * 2 1 4 4 C 1.54947 * 110.39442 * 237.85681 * 2 1 3 5 5 C 1.55305 * 100.94425 * 204.59649 * 4 2 1 6 6 C 1.54387 * 102.24962 * 34.12994 * 5 4 2 7 7 H 1.09001 * 109.82490 * 98.25128 * 6 5 4 8 8 C 1.53003 * 109.82848 * 219.12874 * 6 5 4 9 9 C 1.53001 * 109.47181 * 185.00220 * 8 6 5 10 10 C 1.50697 * 109.47067 * 180.02562 * 9 8 6 11 11 O 1.21278 * 120.00119 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99880 * 180.02562 * 10 9 8 13 13 C 1.46492 * 120.00080 * 179.97438 * 12 10 9 14 14 C 1.53942 * 113.74412 * 251.67474 * 13 12 10 15 15 N 1.47579 * 86.12017 * 222.04435 * 14 13 12 16 16 C 1.36935 * 134.49518 * 204.63646 * 15 14 13 17 17 H 1.08000 * 119.99917 * 180.02562 * 16 15 14 18 18 C 1.38807 * 120.00265 * 0.02562 * 16 15 14 19 19 N 1.31625 * 119.99492 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00216 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47051 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.46968 * 120.00533 * 20 18 16 23 23 H 1.48501 * 109.46976 * 239.99963 * 20 18 16 24 24 C 1.47578 * 91.01179 * 24.64181 * 15 14 13 25 25 O 1.43236 * 107.59079 * 338.64624 * 6 5 4 26 26 H 1.08998 * 109.46997 * 299.36318 * 1 2 3 27 27 H 1.08997 * 109.47228 * 59.36011 * 1 2 3 28 28 H 1.08997 * 109.46722 * 179.35970 * 1 2 3 29 29 H 1.09002 * 111.12827 * 86.67315 * 4 2 1 30 30 H 1.09008 * 111.12113 * 322.51283 * 4 2 1 31 31 H 1.08998 * 110.84418 * 275.94481 * 5 4 2 32 32 H 1.09003 * 110.84733 * 152.31891 * 5 4 2 33 33 H 1.08998 * 109.47041 * 305.00422 * 8 6 5 34 34 H 1.09001 * 109.46877 * 64.99975 * 8 6 5 35 35 H 1.09003 * 109.46631 * 300.00258 * 9 8 6 36 36 H 1.08998 * 109.46910 * 60.00097 * 9 8 6 37 37 H 0.96996 * 119.99791 * 359.97438 * 12 10 9 38 38 H 1.09001 * 112.94436 * 23.40595 * 13 12 10 39 39 H 1.09001 * 113.76928 * 336.34571 * 14 13 12 40 40 H 1.08998 * 113.77030 * 107.74435 * 14 13 12 41 41 H 0.97002 * 119.99495 * 179.97438 * 19 18 16 42 42 H 1.09006 * 113.77069 * 221.05930 * 24 15 14 43 43 H 1.09003 * 113.87710 * 89.67486 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0700 -0.7727 -1.2297 5 6 3.4723 -1.2001 -0.7170 6 6 3.2126 -1.4394 0.7860 7 1 3.0667 -2.5036 0.9710 8 6 4.3991 -0.9280 1.6055 9 6 4.1904 -1.2805 3.0797 10 6 5.3588 -0.7763 3.8870 11 8 6.2690 -0.1930 3.3373 12 7 5.3927 -0.9746 5.2196 13 6 6.5287 -0.4850 6.0044 14 6 7.4560 -1.6021 6.5160 15 7 7.4940 -0.8513 7.7860 16 6 8.3802 -0.7702 8.8267 17 1 8.1685 -0.1258 9.6672 18 6 9.5507 -1.5160 8.8015 19 7 9.8089 -2.3008 7.7769 20 14 10.7599 -1.4047 10.2209 21 1 10.2402 -0.4589 11.2410 22 1 10.9303 -2.7471 10.8324 23 1 12.0704 -0.9200 9.7179 24 6 6.1932 -0.2232 7.4838 25 8 2.0286 -0.7157 1.1413 26 1 -0.3633 0.5039 0.8956 27 1 -0.3633 0.5237 -0.8842 28 1 -0.3633 -1.0276 -0.0115 29 1 2.1516 -0.1201 -2.0990 30 1 1.4506 -1.6422 -1.4503 31 1 4.1987 -0.4006 -0.8626 32 1 3.8006 -2.1178 -1.2049 33 1 5.3165 -1.3946 1.2467 34 1 4.4756 0.1539 1.4979 35 1 3.2729 -0.8139 3.4384 36 1 4.1139 -2.3625 3.1872 37 1 4.6649 -1.4415 5.6591 38 1 7.0554 0.3381 5.5215 39 1 6.9702 -2.5747 6.5950 40 1 8.4165 -1.6455 6.0025 41 1 10.6269 -2.8217 7.7591 42 1 6.1453 0.8345 7.7429 43 1 5.3351 -0.7891 7.8466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753398455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:04 Heat of formation + Delta-G solvation = -44.743558 kcal Electronic energy + Delta-G solvation = -21841.266021 eV Core-core repulsion = 18501.658585 eV Total energy + Delta-G solvation = -3339.607436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.03527 -39.33982 -37.52317 -33.93973 -33.43066 -32.51421 -31.81383 -30.76968 -27.66709 -26.47950 -24.79460 -23.77647 -22.52581 -21.80162 -20.69938 -19.93840 -19.42917 -17.28178 -16.81555 -16.75059 -16.02825 -15.57469 -15.22123 -14.81510 -14.55528 -14.02787 -13.82755 -13.63744 -13.62141 -13.16811 -12.75222 -12.53601 -12.40335 -12.00451 -11.89368 -11.84802 -11.43193 -11.41690 -11.25170 -11.07623 -11.02333 -10.88094 -10.86468 -10.74056 -10.40423 -10.00921 -9.69211 -9.54497 -9.36163 -8.80441 -8.36150 -6.90663 -5.76643 -3.10578 3.02750 3.39485 3.43920 3.47633 3.49462 3.61877 4.21560 4.43371 4.44926 4.53223 4.83734 4.86068 4.93963 5.03360 5.15277 5.16007 5.26359 5.29010 5.41198 5.43345 5.47706 5.50337 5.58862 5.63550 5.70896 5.72583 5.79324 5.86989 6.06406 6.09437 6.21447 6.25514 6.45002 6.59445 6.83238 6.88144 7.25555 7.40172 7.58024 7.96178 7.98797 8.65388 9.03932 9.69890 10.57150 11.40191 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.051909 B = 0.002538 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.276356 B =11031.418304 C =11349.679779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.074 3.926 3 H 0.069 0.931 4 C -0.153 4.153 5 C -0.152 4.152 6 C 0.080 3.920 7 H 0.080 0.920 8 C -0.112 4.112 9 C -0.137 4.137 10 C 0.509 3.491 11 O -0.548 6.548 12 N -0.718 5.718 13 C 0.091 3.909 14 C 0.154 3.846 15 N -0.608 5.608 16 C -0.224 4.224 17 H 0.082 0.918 18 C -0.008 4.008 19 N -0.919 5.919 20 Si 0.915 3.085 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.112 3.888 25 O -0.374 6.374 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.396 0.604 38 H 0.110 0.890 39 H 0.028 0.972 40 H 0.076 0.924 41 H 0.254 0.746 42 H 0.048 0.952 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.739 1.461 -17.503 25.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 H 0.087 0.913 4 C -0.190 4.190 5 C -0.190 4.190 6 C 0.022 3.978 7 H 0.098 0.902 8 C -0.150 4.150 9 C -0.177 4.177 10 C 0.295 3.705 11 O -0.426 6.426 12 N -0.368 5.368 13 C -0.014 4.014 14 C 0.027 3.973 15 N -0.334 5.334 16 C -0.351 4.351 17 H 0.100 0.900 18 C -0.205 4.205 19 N -0.566 5.566 20 Si 0.745 3.255 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.216 1.216 24 C -0.015 4.015 25 O -0.294 6.294 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.230 0.770 38 H 0.128 0.872 39 H 0.045 0.955 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -17.856 1.820 -17.497 25.066 hybrid contribution 0.409 -0.408 0.902 1.071 sum -17.447 1.412 -16.596 24.121 Atomic orbital electron populations 1.21879 0.93869 1.02690 1.02352 1.22942 0.94690 0.95710 0.85006 0.91330 1.23320 0.96403 1.00834 0.98469 1.23177 0.97664 1.02923 0.95240 1.22802 0.85398 0.96109 0.93444 0.90176 1.21718 0.97195 1.02747 0.93301 1.21619 0.97807 1.02609 0.95684 1.20697 0.87802 0.79309 0.82692 1.90681 1.38801 1.42376 1.70755 1.46168 1.24402 1.58754 1.07474 1.23855 0.87473 1.00008 0.90079 1.22667 0.97268 0.91905 0.85415 1.45691 1.16986 1.49728 1.21018 1.19035 0.97356 1.21944 0.96813 0.90001 1.24833 0.98303 0.99000 0.98345 1.69850 1.26052 1.30636 1.30023 0.86009 0.81053 0.77253 0.81210 1.20396 1.21719 1.21607 1.22882 0.90195 0.97245 0.91224 1.88443 1.42051 1.64840 1.34032 0.91822 0.91435 0.92012 0.90104 0.90399 0.90113 0.89977 0.90143 0.90763 0.88590 0.89247 0.77014 0.87224 0.95456 0.90577 0.93600 0.93337 0.94727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.63 37.16 0.36 -0.64 16 2 C 0.07 0.60 4.07 -25.70 -0.10 0.50 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.15 -1.00 6.57 -24.48 -0.16 -1.16 16 5 C -0.15 -1.13 6.54 -24.78 -0.16 -1.30 16 6 C 0.08 0.74 3.51 -26.00 -0.09 0.65 16 7 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 8 C -0.11 -1.25 4.07 -26.73 -0.11 -1.36 16 9 C -0.14 -1.58 5.61 -27.88 -0.16 -1.74 16 10 C 0.51 8.16 7.83 -10.99 -0.09 8.08 16 11 O -0.55 -11.07 15.58 5.56 0.09 -10.99 16 12 N -0.72 -11.43 5.36 -55.35 -0.30 -11.73 16 13 C 0.09 1.83 4.43 -70.15 -0.31 1.52 16 14 C 0.15 3.78 7.32 -2.98 -0.02 3.76 16 15 N -0.61 -15.98 3.70 -178.09 -0.66 -16.64 16 16 C -0.22 -6.41 10.70 -15.06 -0.16 -6.57 16 17 H 0.08 2.24 7.83 -52.49 -0.41 1.83 16 18 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 19 N -0.92 -27.94 11.38 55.49 0.63 -27.30 16 20 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 C 0.11 2.30 8.69 -2.98 -0.03 2.27 16 25 O -0.37 -3.91 10.34 -35.23 -0.36 -4.28 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.47 8.06 -51.92 -0.42 0.05 16 31 H 0.08 0.62 7.85 -51.93 -0.41 0.21 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 34 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 35 H 0.10 1.03 7.90 -51.93 -0.41 0.62 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.40 5.11 8.73 -40.82 -0.36 4.75 16 38 H 0.11 2.42 7.46 -51.93 -0.39 2.03 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.08 2.12 7.15 -51.93 -0.37 1.75 16 41 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.04 0.66 8.12 -51.93 -0.42 0.23 16 LS Contribution 350.75 15.07 5.29 5.29 Total: -1.00 -34.08 350.75 -8.86 -42.93 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.39 Total: 1.61 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -1.13 Total: 3.68 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -0.32 Total: -55.67 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -0.28 Total: -15.27 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.08 -8.86 -42.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753398455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.810 kcal (2) G-P(sol) polarization free energy of solvation -34.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds