Wall clock time and date at job start Tue Mar 31 2020 06:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 110.41729 * 2 1 4 4 C 1.54487 * 110.37340 * 237.69003 * 2 1 3 5 5 C 1.54505 * 104.06179 * 217.18979 * 4 2 1 6 6 C 1.54472 * 104.06681 * 0.02562 * 5 4 2 7 7 H 1.09004 * 110.37299 * 265.14702 * 6 5 4 8 8 C 1.52998 * 110.37541 * 142.92132 * 6 5 4 9 9 C 1.53001 * 109.47152 * 175.00108 * 8 6 5 10 10 C 1.50703 * 109.46870 * 179.97438 * 9 8 6 11 11 O 1.21279 * 119.99923 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99675 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00006 * 179.97438 * 12 10 9 14 14 C 1.53939 * 113.74600 * 253.74855 * 13 12 10 15 15 N 1.47814 * 86.03502 * 222.08273 * 14 13 12 16 16 C 1.36943 * 134.45640 * 204.63978 * 15 14 13 17 17 H 1.08003 * 120.00100 * 179.86633 * 16 15 14 18 18 C 1.38811 * 120.00003 * 359.86956 * 16 15 14 19 19 N 1.31624 * 119.99815 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00323 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46701 * 60.00049 * 20 18 16 22 22 H 1.48495 * 109.47347 * 179.97438 * 20 18 16 23 23 H 1.48499 * 109.47150 * 300.00280 * 20 18 16 24 24 C 1.47574 * 91.05188 * 24.54896 * 15 14 13 25 25 O 1.44421 * 110.37396 * 122.31316 * 2 1 3 26 26 H 1.09010 * 109.46831 * 182.30651 * 1 2 3 27 27 H 1.08996 * 109.46987 * 302.30547 * 1 2 3 28 28 H 1.08996 * 109.46862 * 62.31233 * 1 2 3 29 29 H 1.09003 * 110.50578 * 335.83854 * 4 2 1 30 30 H 1.09000 * 110.50989 * 98.54420 * 4 2 1 31 31 H 1.09003 * 110.50916 * 118.64999 * 5 4 2 32 32 H 1.08997 * 110.51173 * 241.35111 * 5 4 2 33 33 H 1.09000 * 109.47136 * 294.99877 * 8 6 5 34 34 H 1.08999 * 109.47367 * 54.99807 * 8 6 5 35 35 H 1.09000 * 109.46911 * 299.99907 * 9 8 6 36 36 H 1.08995 * 109.47537 * 60.00007 * 9 8 6 37 37 H 0.97002 * 120.00571 * 0.02562 * 12 10 9 38 38 H 1.09007 * 112.94170 * 25.34345 * 13 12 10 39 39 H 1.09001 * 113.76864 * 336.34627 * 14 13 12 40 40 H 1.09002 * 113.77228 * 107.74471 * 14 13 12 41 41 H 0.97000 * 119.99925 * 180.02562 * 19 18 16 42 42 H 1.09004 * 113.77076 * 221.15508 * 24 15 14 43 43 H 1.08999 * 113.87671 * 89.76993 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0678 -0.7741 -1.2240 5 6 3.3178 -1.5057 -0.6859 6 6 3.3870 -1.0877 0.7996 7 1 4.0520 -0.2328 0.9227 8 6 3.8624 -2.2593 1.6610 9 6 4.0429 -1.7897 3.1059 10 6 4.5106 -2.9440 3.9545 11 8 4.6831 -4.0346 3.4529 12 7 4.7382 -2.7639 5.2707 13 6 5.1923 -3.8861 6.0958 14 6 4.1049 -4.4499 7.0281 15 7 5.1659 -4.5197 8.0548 16 6 5.3617 -5.2721 9.1821 17 1 6.2494 -5.1279 9.7802 18 6 4.4193 -6.2202 9.5561 19 7 3.3373 -6.3956 8.8275 20 14 4.6866 -7.2471 11.0934 21 1 4.7845 -6.3529 12.2751 22 1 3.5439 -8.1785 11.2714 23 1 5.9438 -8.0256 10.9563 24 6 5.9302 -3.4551 7.3763 25 8 2.0328 -0.7237 1.1442 26 1 -0.3633 -1.0269 0.0414 27 1 -0.3633 0.5492 0.8686 28 1 -0.3633 0.4775 -0.9100 29 1 1.3275 -1.4919 -1.5772 30 1 2.3430 -0.0839 -2.0216 31 1 3.1955 -2.5853 -0.7733 32 1 4.2109 -1.1773 -1.2175 33 1 3.1217 -3.0583 1.6285 34 1 4.8133 -2.6297 1.2779 35 1 4.7837 -0.9908 3.1384 36 1 3.0921 -1.4194 3.4892 37 1 4.6007 -1.8915 5.6718 38 1 5.7180 -4.6497 5.5223 39 1 3.3137 -3.7374 7.2616 40 1 3.7245 -5.4241 6.7207 41 1 2.6785 -7.0578 9.0890 42 1 7.0047 -3.6365 7.3463 43 1 5.6780 -2.4490 7.7112 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753398456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:09 Heat of formation + Delta-G solvation = -43.887888 kcal Electronic energy + Delta-G solvation = -21838.374766 eV Core-core repulsion = 18498.804435 eV Total energy + Delta-G solvation = -3339.570331 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.97196 -39.33919 -37.51067 -33.97587 -33.42992 -32.46543 -31.80503 -30.75898 -27.66833 -26.47317 -24.79523 -23.71422 -22.54521 -21.51863 -20.99758 -19.98663 -19.45176 -16.89511 -16.77138 -16.59654 -16.24593 -15.62899 -15.11093 -15.08306 -14.73146 -14.07718 -13.83637 -13.62336 -13.46184 -13.12392 -12.74545 -12.49424 -12.44764 -11.93236 -11.84783 -11.73350 -11.42815 -11.41183 -11.25101 -11.04361 -10.95014 -10.85451 -10.81645 -10.73899 -10.41351 -10.03598 -9.93349 -9.53144 -9.37449 -8.78740 -8.36968 -6.89990 -5.75153 -3.09382 3.01897 3.40942 3.44226 3.46813 3.57981 3.58613 4.33659 4.38745 4.48432 4.63707 4.69019 4.89338 4.92020 5.05433 5.13915 5.18031 5.21629 5.29332 5.40078 5.45625 5.50076 5.54062 5.59416 5.62809 5.69405 5.75694 5.82043 5.86693 6.03410 6.06256 6.20843 6.24884 6.45086 6.59404 6.72133 6.83388 7.26362 7.40549 7.58622 7.95734 7.99130 8.64640 9.04556 9.70945 10.58035 11.41465 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.036526 B = 0.002625 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.398150 B =10663.897271 C =10961.924841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.066 0.934 4 C -0.152 4.152 5 C -0.152 4.152 6 C 0.075 3.925 7 H 0.068 0.932 8 C -0.096 4.096 9 C -0.139 4.139 10 C 0.509 3.491 11 O -0.547 6.547 12 N -0.718 5.718 13 C 0.091 3.909 14 C 0.154 3.846 15 N -0.608 5.608 16 C -0.226 4.226 17 H 0.081 0.919 18 C -0.007 4.007 19 N -0.919 5.919 20 Si 0.915 3.085 21 H -0.285 1.285 22 H -0.289 1.289 23 H -0.283 1.283 24 C 0.113 3.887 25 O -0.366 6.366 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.396 0.604 38 H 0.109 0.891 39 H 0.028 0.972 40 H 0.076 0.924 41 H 0.255 0.745 42 H 0.048 0.952 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 15.812 -19.771 25.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.011 3.989 3 H 0.084 0.916 4 C -0.190 4.190 5 C -0.190 4.190 6 C 0.017 3.983 7 H 0.086 0.914 8 C -0.134 4.134 9 C -0.179 4.179 10 C 0.295 3.705 11 O -0.425 6.425 12 N -0.368 5.368 13 C -0.014 4.014 14 C 0.028 3.972 15 N -0.334 5.334 16 C -0.354 4.354 17 H 0.099 0.901 18 C -0.204 4.204 19 N -0.565 5.565 20 Si 0.745 3.255 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.210 1.210 24 C -0.014 4.014 25 O -0.285 6.285 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.230 0.770 38 H 0.127 0.873 39 H 0.046 0.954 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.684 14.697 -19.676 24.617 hybrid contribution 0.044 0.072 0.990 0.994 sum -1.640 14.769 -18.686 23.874 Atomic orbital electron populations 1.21804 0.93290 1.03098 1.02264 1.22951 0.95322 0.95300 0.85322 0.91602 1.23008 0.97914 0.99774 0.98270 1.22984 0.98276 1.01923 0.95803 1.23048 0.84656 0.97062 0.93532 0.91396 1.21397 1.02663 0.96630 0.92716 1.21652 1.03366 0.97277 0.95629 1.20652 0.77212 0.89986 0.82620 1.90688 1.52056 1.26875 1.72848 1.46171 1.68024 1.14004 1.08613 1.23854 0.98981 0.88795 0.89748 1.22707 0.90644 0.99339 0.84535 1.45728 1.21213 1.38706 1.27795 1.18938 1.04509 1.12380 0.99565 0.90125 1.24830 0.96610 0.99665 0.99270 1.69827 1.10700 1.36675 1.39300 0.86163 0.77093 0.79853 0.82404 1.21156 1.21513 1.20986 1.22860 0.96255 0.92819 0.89512 1.89180 1.27063 1.74335 1.37964 0.91654 0.91834 0.91356 0.90568 0.90791 0.90240 0.90583 0.90128 0.89858 0.89370 0.88457 0.77031 0.87295 0.95395 0.90570 0.93479 0.93351 0.94771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.52 37.16 0.35 -0.71 16 2 C 0.07 0.56 3.92 -25.95 -0.10 0.46 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 4 C -0.15 -1.07 6.63 -25.16 -0.17 -1.24 16 5 C -0.15 -1.19 6.63 -25.17 -0.17 -1.36 16 6 C 0.07 0.70 3.24 -25.96 -0.08 0.61 16 7 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 8 C -0.10 -1.08 4.13 -26.73 -0.11 -1.19 16 9 C -0.14 -1.59 5.64 -27.88 -0.16 -1.74 16 10 C 0.51 8.11 7.83 -10.98 -0.09 8.03 16 11 O -0.55 -11.01 15.60 5.56 0.09 -10.92 16 12 N -0.72 -11.35 5.37 -55.35 -0.30 -11.65 16 13 C 0.09 1.83 4.40 -70.16 -0.31 1.53 16 14 C 0.15 3.81 7.33 -2.84 -0.02 3.79 16 15 N -0.61 -15.99 3.70 -177.91 -0.66 -16.65 16 16 C -0.23 -6.48 10.70 -15.06 -0.16 -6.64 16 17 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 19 N -0.92 -28.02 11.39 55.49 0.63 -27.39 16 20 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C 0.11 2.30 8.69 -2.97 -0.03 2.27 16 25 O -0.37 -4.04 10.83 -35.23 -0.38 -4.42 16 26 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.53 7.87 -51.93 -0.41 0.12 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.67 7.87 -51.93 -0.41 0.26 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 34 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 1.09 8.01 -51.93 -0.42 0.67 16 37 H 0.40 5.04 8.71 -40.82 -0.36 4.69 16 38 H 0.11 2.39 7.51 -51.93 -0.39 2.00 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.08 2.14 7.17 -51.93 -0.37 1.77 16 41 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.03 0.64 8.11 -51.93 -0.42 0.22 16 LS Contribution 350.94 15.07 5.29 5.29 Total: -1.00 -34.22 350.94 -8.87 -43.09 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.39 Total: 1.67 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -1.13 Total: 3.51 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.32 Total: -55.69 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.29 Total: -15.34 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.22 -8.87 -43.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753398456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.798 kcal (2) G-P(sol) polarization free energy of solvation -34.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds