Wall clock time and date at job start Tue Mar 31 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 119.99956 * 2 1 4 4 O 1.42897 * 109.47390 * 134.99914 * 3 2 1 5 5 C 1.42897 * 114.00282 * 179.97438 * 4 3 2 6 6 C 1.50704 * 109.47195 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99770 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99857 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99896 * 180.02562 * 8 6 5 10 10 H 1.09001 * 110.53615 * 327.60926 * 9 8 6 11 11 C 1.54954 * 110.53150 * 90.24370 * 9 8 6 12 12 C 1.54898 * 102.77698 * 156.56901 * 11 9 8 13 13 C 1.54266 * 104.19387 * 322.08378 * 12 11 9 14 14 C 1.53874 * 106.59902 * 23.61194 * 13 12 11 15 15 H 1.09001 * 110.03091 * 240.66442 * 14 13 12 16 16 C 1.52996 * 110.03445 * 119.28520 * 14 13 12 17 17 N 1.46498 * 109.47059 * 67.08779 * 16 14 13 18 18 C 1.36943 * 119.99752 * 179.72430 * 17 16 14 19 19 H 1.08002 * 119.99793 * 0.27665 * 18 17 16 20 20 C 1.38811 * 120.00012 * 180.27737 * 18 17 16 21 21 N 1.31624 * 119.99698 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00072 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47159 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47290 * 120.00044 * 22 20 18 25 25 H 1.48503 * 109.47163 * 240.00049 * 22 20 18 26 26 H 1.08006 * 120.00171 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00222 * 179.97438 * 1 2 3 28 28 H 1.07998 * 119.99911 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47133 * 14.99979 * 3 2 1 30 30 H 1.09001 * 109.46982 * 255.00136 * 3 2 1 31 31 H 1.09002 * 109.46823 * 60.00550 * 5 4 3 32 32 H 1.08998 * 109.47499 * 300.00404 * 5 4 3 33 33 H 0.97001 * 120.00370 * 0.02562 * 8 6 5 34 34 H 1.08998 * 110.72306 * 38.25828 * 11 9 8 35 35 H 1.09003 * 110.92501 * 274.97364 * 11 9 8 36 36 H 1.09001 * 110.48507 * 203.40965 * 12 11 9 37 37 H 1.08992 * 110.48564 * 80.76267 * 12 11 9 38 38 H 1.09003 * 110.03336 * 264.32503 * 13 12 11 39 39 H 1.08997 * 110.02841 * 142.89514 * 13 12 11 40 40 H 1.09004 * 109.47066 * 307.09047 * 16 14 13 41 41 H 1.08994 * 109.46974 * 187.09194 * 16 14 13 42 42 H 0.97001 * 120.00384 * 0.02562 * 17 16 14 43 43 H 0.96999 * 119.99739 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9083 2.4349 1.0320 6 6 4.9939 2.2569 2.0621 7 8 5.0890 1.2107 2.6682 8 7 5.8595 3.2599 2.3090 9 6 6.9152 3.0867 3.3100 10 1 6.5752 2.4357 4.1155 11 6 8.1971 2.5140 2.6544 12 6 9.3116 2.9623 3.6323 13 6 8.8798 4.3755 4.0756 14 6 7.3568 4.4541 3.8712 15 1 7.1158 5.2448 3.1606 16 6 6.6617 4.7215 5.2077 17 7 7.0092 6.0645 5.6787 18 6 6.4961 6.5297 6.8601 19 1 5.8389 5.9049 7.4467 20 6 6.8208 7.8044 7.3037 21 7 7.6214 8.5660 6.5885 22 14 6.1216 8.4387 8.9155 23 1 5.2560 7.3966 9.5238 24 1 7.2340 8.7618 9.8447 25 1 5.3192 9.6619 8.6597 26 1 -0.5401 0.9353 0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3855 2.1160 0.2660 30 1 2.4755 1.4867 -0.9927 31 1 3.2688 3.2696 1.3192 32 1 4.3586 2.6396 0.0607 33 1 5.7837 4.0965 1.8240 34 1 8.3522 2.9482 1.6668 35 1 8.1509 1.4266 2.5938 36 1 10.2741 3.0000 3.1222 37 1 9.3592 2.2914 4.4899 38 1 9.3781 5.1273 3.4636 39 1 9.1238 4.5277 5.1270 40 1 6.9876 3.9837 5.9408 41 1 5.5820 4.6506 5.0762 42 1 7.5992 6.6258 5.1517 43 1 7.8486 9.4565 6.8986 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753881641.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:37 Heat of formation + Delta-G solvation = -61.340164 kcal Electronic energy + Delta-G solvation = -21823.875628 eV Core-core repulsion = 18483.548509 eV Total energy + Delta-G solvation = -3340.327119 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.04306 -38.49769 -37.50481 -34.47390 -34.13261 -33.57900 -31.37628 -29.27130 -28.51290 -27.06972 -25.63088 -24.37457 -22.21366 -21.06109 -20.45319 -20.28613 -19.34743 -17.47564 -17.27074 -16.69689 -16.58789 -16.13179 -15.39993 -14.86402 -14.71609 -14.57514 -14.06285 -13.75538 -13.49209 -13.22171 -13.04201 -12.81975 -12.50614 -12.43926 -12.17151 -11.81309 -11.32780 -11.28123 -10.91313 -10.83607 -10.75129 -10.58341 -10.44164 -10.28370 -10.12043 -9.95106 -9.78749 -9.70819 -9.62894 -8.94204 -8.87232 -6.91477 -5.76796 -3.04965 1.78833 2.60152 2.80201 3.43396 3.49609 3.51660 3.84302 4.52017 4.57774 4.70096 4.74837 4.81562 4.82494 4.88591 4.94305 5.03460 5.10859 5.16987 5.50029 5.51493 5.55846 5.61304 5.66492 5.73400 5.84862 5.94041 6.08565 6.20326 6.22244 6.27372 6.28060 6.32322 6.51363 6.52842 6.65841 6.76748 6.80926 6.93516 7.50839 7.71662 8.23263 8.42496 9.53885 10.11543 10.46740 11.46202 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016251 B = 0.003234 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1722.591083 B = 8654.998793 C = 9994.714151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C 0.086 3.914 4 O -0.359 6.359 5 C 0.043 3.957 6 C 0.514 3.486 7 O -0.521 6.521 8 N -0.718 5.718 9 C 0.147 3.853 10 H 0.097 0.903 11 C -0.132 4.132 12 C -0.122 4.122 13 C -0.115 4.115 14 C -0.102 4.102 15 H 0.076 0.924 16 C 0.160 3.840 17 N -0.731 5.731 18 C -0.237 4.237 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.118 0.882 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.400 0.600 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.022 0.978 41 H 0.017 0.983 42 H 0.384 0.616 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.100 -12.913 -16.895 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.168 4.168 3 C 0.010 3.990 4 O -0.277 6.277 5 C -0.037 4.037 6 C 0.298 3.702 7 O -0.396 6.396 8 N -0.370 5.370 9 C 0.043 3.957 10 H 0.115 0.885 11 C -0.171 4.171 12 C -0.160 4.160 13 C -0.153 4.153 14 C -0.122 4.122 15 H 0.094 0.906 16 C 0.032 3.968 17 N -0.375 5.375 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.116 0.884 27 H 0.123 0.877 28 H 0.136 0.864 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.235 0.765 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.039 0.961 41 H 0.035 0.965 42 H 0.217 0.783 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.110 -13.845 -16.168 22.145 hybrid contribution -0.313 1.378 0.272 1.439 sum -6.423 -12.468 -15.896 21.198 Atomic orbital electron populations 1.23848 0.95514 1.02349 0.99991 1.22714 0.95620 0.98185 1.00249 1.21620 0.88836 0.96266 0.92315 1.88045 1.44270 1.34979 1.60454 1.22231 0.93401 0.89346 0.98724 1.20170 0.82169 0.84194 0.83623 1.90727 1.72312 1.26943 1.49611 1.45958 1.31842 1.17070 1.42152 1.21948 0.85967 0.97509 0.90300 0.88463 1.22864 0.94690 1.00657 0.98890 1.22320 0.97707 0.97279 0.98719 1.22130 0.94172 0.96019 1.02953 1.22188 0.96077 0.95178 0.98713 0.90585 1.20737 0.95907 0.88779 0.91341 1.42357 1.58027 1.12402 1.24762 1.19288 1.22563 0.97538 0.97406 0.91198 1.24730 1.00393 0.96967 0.98997 1.69670 1.39822 1.09894 1.38946 0.86122 0.78169 0.78564 0.83404 1.20550 1.21870 1.21909 0.88369 0.87715 0.86426 0.92473 0.92129 0.90040 0.90269 0.76511 0.91455 0.91462 0.91751 0.91515 0.91851 0.90205 0.96066 0.96517 0.78260 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 14.31 29.01 0.42 -0.85 16 2 C -0.15 -1.27 9.89 -36.03 -0.36 -1.63 16 3 C 0.09 0.74 6.35 36.00 0.23 0.97 16 4 O -0.36 -4.43 9.86 -55.14 -0.54 -4.97 16 5 C 0.04 0.43 6.42 36.01 0.23 0.66 16 6 C 0.51 6.98 7.91 -10.98 -0.09 6.89 16 7 O -0.52 -9.49 16.15 -14.35 -0.23 -9.72 16 8 N -0.72 -8.63 5.16 -52.16 -0.27 -8.89 16 9 C 0.15 2.05 2.75 -66.23 -0.18 1.87 16 10 H 0.10 1.58 7.27 -51.93 -0.38 1.20 16 11 C -0.13 -1.63 6.58 -24.70 -0.16 -1.79 16 12 C -0.12 -1.52 6.83 -25.07 -0.17 -1.69 16 13 C -0.11 -1.71 6.16 -25.61 -0.16 -1.87 16 14 C -0.10 -1.59 2.70 -89.50 -0.24 -1.83 16 15 H 0.08 1.15 7.73 -51.93 -0.40 0.75 16 16 C 0.16 3.23 5.28 -4.04 -0.02 3.21 16 17 N -0.73 -18.32 5.36 -59.91 -0.32 -18.65 16 18 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 19 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 20 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 22 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H 0.10 0.59 7.90 -52.48 -0.41 0.18 16 27 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 28 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.06 0.42 7.86 -51.93 -0.41 0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.40 3.73 8.37 -40.82 -0.34 3.39 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 1.39 7.60 -51.93 -0.39 1.00 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.38 9.99 7.53 -40.82 -0.31 9.68 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 359.05 15.07 5.41 5.41 Total: -1.00 -34.17 359.05 -8.27 -42.44 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -7.26 Total: 7.66 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: -0.75 Total: -3.40 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.13 Total: -54.94 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -0.78 Total: -14.69 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.17 -8.27 -42.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753881641.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.901 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds