Wall clock time and date at job start Tue Mar 31 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50706 * 119.99800 * 2 1 4 4 O 1.42896 * 109.47094 * 134.99952 * 3 2 1 5 5 C 1.42896 * 114.00142 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47673 * 179.97438 * 5 4 3 7 7 O 1.21289 * 119.99480 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00581 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00301 * 180.02562 * 8 6 5 10 10 H 1.08994 * 110.01625 * 33.60526 * 9 8 6 11 11 C 1.54269 * 110.07027 * 272.19145 * 9 8 6 12 12 C 1.54899 * 104.19583 * 264.30319 * 11 9 8 13 13 C 1.54887 * 102.74441 * 322.06045 * 12 11 9 14 14 C 1.53872 * 110.03324 * 154.99933 * 9 8 6 15 15 H 1.09004 * 110.03280 * 0.02562 * 14 9 8 16 16 C 1.52993 * 110.03410 * 238.61446 * 14 9 8 17 17 N 1.46496 * 109.47551 * 174.99868 * 16 14 9 18 18 C 1.36934 * 120.00548 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99288 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00389 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00257 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 H 1.07999 * 120.00082 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99599 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.00231 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.46981 * 14.99700 * 3 2 1 30 30 H 1.08997 * 109.46561 * 254.99740 * 3 2 1 31 31 H 1.08998 * 109.46753 * 59.99694 * 5 4 3 32 32 H 1.09004 * 109.47173 * 300.00132 * 5 4 3 33 33 H 0.97002 * 119.99431 * 0.02562 * 8 6 5 34 34 H 1.09002 * 110.49085 * 22.97725 * 11 9 8 35 35 H 1.08997 * 110.48925 * 145.62461 * 11 9 8 36 36 H 1.09001 * 110.75392 * 80.36769 * 12 11 9 37 37 H 1.08994 * 110.75352 * 203.56156 * 12 11 9 38 38 H 1.09004 * 110.48458 * 279.26354 * 13 12 11 39 39 H 1.08998 * 110.48937 * 156.62409 * 13 12 11 40 40 H 1.09004 * 109.46862 * 55.00066 * 16 14 9 41 41 H 1.09004 * 109.46998 * 295.00544 * 16 14 9 42 42 H 0.96999 * 119.99694 * 0.02562 * 17 16 14 43 43 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9084 2.4350 1.0321 6 6 4.9939 2.2571 2.0621 7 8 5.0891 1.2108 2.6682 8 7 5.8590 3.2604 2.3098 9 6 6.9145 3.0873 3.3107 10 1 7.2532 2.0513 3.3203 11 6 6.3912 3.4851 4.7063 12 6 6.8456 4.9560 4.8774 13 6 8.2470 4.9596 4.2177 14 6 8.0945 4.0247 3.0001 15 1 7.8815 4.6089 2.1048 16 6 9.3737 3.2093 2.8020 17 7 10.4617 4.0997 2.3903 18 6 11.7107 3.5907 2.1534 19 1 11.8935 2.5326 2.2696 20 6 12.7417 4.4345 1.7639 21 7 13.9421 3.9451 1.5357 22 14 12.4253 6.2645 1.5622 23 1 12.0031 6.5429 0.1660 24 1 11.3521 6.6873 2.4975 25 1 13.6691 7.0179 1.8628 26 1 -0.5400 0.9353 0.0004 27 1 -0.5399 -0.9353 0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3855 2.1161 0.2659 30 1 2.4755 1.4867 -0.9926 31 1 3.2689 3.2696 1.3191 32 1 4.3587 2.6397 0.0607 33 1 5.7826 4.0973 1.8253 34 1 5.3039 3.4154 4.7403 35 1 6.8389 2.8556 5.4754 36 1 6.1703 5.6323 4.3533 37 1 6.9117 5.2196 5.9329 38 1 8.9944 4.5682 4.9078 39 1 8.5142 5.9658 3.8950 40 1 9.2090 2.4565 2.0310 41 1 9.6403 2.7184 3.7380 42 1 10.2976 5.0500 2.2863 43 1 14.6624 4.5348 1.2631 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753881642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:41 Heat of formation + Delta-G solvation = -55.748801 kcal Electronic energy + Delta-G solvation = -21870.573057 eV Core-core repulsion = 18530.488398 eV Total energy + Delta-G solvation = -3340.084659 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.18285 -38.60916 -37.57384 -34.68671 -34.18052 -33.51977 -31.53517 -29.38707 -28.95959 -27.27233 -25.75983 -24.45235 -21.86123 -21.36768 -20.43706 -20.08088 -19.68832 -17.77139 -17.37115 -16.89099 -16.66359 -16.15797 -15.48376 -15.14755 -14.70538 -14.42836 -14.33114 -13.87193 -13.78909 -13.37182 -13.18483 -12.69706 -12.56169 -12.47651 -12.18472 -11.87821 -11.51092 -11.34585 -11.10312 -10.94133 -10.84704 -10.69911 -10.51873 -10.40563 -10.33640 -10.12199 -9.82070 -9.68439 -9.59044 -9.06549 -8.89432 -7.23092 -5.76442 -3.12022 1.74431 2.53379 2.72937 3.35327 3.37389 3.43724 3.78041 4.46307 4.56234 4.58475 4.67013 4.70577 4.72270 4.80591 4.87603 4.96860 4.99831 5.10318 5.30313 5.47347 5.47427 5.52326 5.58783 5.68942 5.74223 5.77592 5.85109 5.96577 6.08256 6.14872 6.18416 6.23296 6.32093 6.46834 6.49645 6.67805 6.70884 6.80261 7.42107 8.00206 8.16169 8.42495 9.21566 9.93574 10.13629 11.42082 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022563 B = 0.003057 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.671241 B = 9156.208986 C = 9764.955877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.086 3.914 4 O -0.359 6.359 5 C 0.043 3.957 6 C 0.512 3.488 7 O -0.518 6.518 8 N -0.719 5.719 9 C 0.148 3.852 10 H 0.096 0.904 11 C -0.130 4.130 12 C -0.125 4.125 13 C -0.116 4.116 14 C -0.107 4.107 15 H 0.077 0.923 16 C 0.165 3.835 17 N -0.754 5.754 18 C -0.243 4.243 19 H 0.090 0.910 20 C 0.003 3.997 21 N -0.934 5.934 22 Si 0.885 3.115 23 H -0.285 1.285 24 H -0.277 1.277 25 H -0.291 1.291 26 H 0.097 0.903 27 H 0.105 0.895 28 H 0.119 0.881 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.399 0.601 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.027 0.973 41 H 0.031 0.969 42 H 0.360 0.640 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.616 1.063 -0.416 26.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.167 4.167 3 C 0.010 3.990 4 O -0.277 6.277 5 C -0.037 4.037 6 C 0.297 3.703 7 O -0.393 6.393 8 N -0.372 5.372 9 C 0.043 3.957 10 H 0.114 0.886 11 C -0.169 4.169 12 C -0.162 4.162 13 C -0.154 4.154 14 C -0.126 4.126 15 H 0.095 0.905 16 C 0.038 3.962 17 N -0.400 5.400 18 C -0.373 4.373 19 H 0.108 0.892 20 C -0.193 4.193 21 N -0.583 5.583 22 Si 0.716 3.284 23 H -0.212 1.212 24 H -0.203 1.203 25 H -0.218 1.218 26 H 0.115 0.885 27 H 0.123 0.877 28 H 0.137 0.863 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.233 0.767 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.049 0.951 42 H 0.193 0.807 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -26.317 -0.059 0.117 26.317 hybrid contribution -0.131 2.026 -0.705 2.149 sum -26.448 1.966 -0.588 26.528 Atomic orbital electron populations 1.23835 0.95490 1.02303 1.00192 1.22734 0.95616 0.98256 1.00062 1.21622 0.88749 0.96196 0.92459 1.88052 1.44279 1.34976 1.60396 1.22225 0.93270 0.89195 0.98983 1.20183 0.82479 0.84094 0.83540 1.90745 1.71860 1.26860 1.49794 1.46063 1.31933 1.16996 1.42223 1.21651 0.85918 1.01281 0.86820 0.88605 1.22750 1.00688 0.96777 0.96689 1.22532 0.96944 0.96203 1.00551 1.22420 0.96750 0.99435 0.96763 1.22279 0.94862 0.96570 0.98906 0.90474 1.20718 0.85521 0.92294 0.97693 1.42673 1.07735 1.05649 1.83923 1.19072 0.84740 0.95147 1.38297 0.89226 1.24682 0.95466 0.97469 1.01677 1.69707 1.00960 1.34330 1.53264 0.86533 0.77005 0.87028 0.77870 1.21183 1.20319 1.21755 0.88452 0.87692 0.86321 0.92604 0.91993 0.90345 0.90075 0.76700 0.91614 0.90570 0.91993 0.91633 0.90491 0.91635 0.95495 0.95136 0.80710 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.17 14.31 29.01 0.42 -0.75 16 2 C -0.15 -1.21 9.89 -36.02 -0.36 -1.56 16 3 C 0.09 0.69 6.35 36.01 0.23 0.92 16 4 O -0.36 -4.22 9.86 -55.14 -0.54 -4.76 16 5 C 0.04 0.40 6.42 36.00 0.23 0.63 16 6 C 0.51 6.55 7.90 -10.99 -0.09 6.46 16 7 O -0.52 -9.12 16.15 -14.36 -0.23 -9.35 16 8 N -0.72 -7.89 5.03 -52.72 -0.27 -8.15 16 9 C 0.15 1.93 2.90 -66.81 -0.19 1.74 16 10 H 0.10 1.48 7.09 -51.93 -0.37 1.11 16 11 C -0.13 -1.53 6.54 -25.07 -0.16 -1.69 16 12 C -0.12 -1.35 6.91 -24.73 -0.17 -1.52 16 13 C -0.12 -1.56 6.08 -25.07 -0.15 -1.71 16 14 C -0.11 -1.53 2.73 -89.51 -0.24 -1.77 16 15 H 0.08 1.05 7.62 -51.93 -0.40 0.65 16 16 C 0.17 3.16 5.31 -4.05 -0.02 3.14 16 17 N -0.75 -17.70 5.25 -59.91 -0.31 -18.02 16 18 C -0.24 -6.91 10.47 -15.06 -0.16 -7.07 16 19 H 0.09 2.75 8.06 -52.48 -0.42 2.33 16 20 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 21 N -0.93 -29.53 13.97 55.49 0.78 -28.76 16 22 Si 0.89 21.93 27.74 -169.99 -4.71 17.21 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.36 6.52 56.52 0.37 -6.00 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 26 H 0.10 0.51 7.90 -52.49 -0.41 0.09 16 27 H 0.10 0.56 8.06 -52.49 -0.42 0.13 16 28 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.06 0.35 7.86 -51.93 -0.41 -0.05 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.40 3.20 8.32 -40.82 -0.34 2.86 16 34 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.15 7.76 -51.93 -0.40 0.75 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.03 0.60 8.00 -51.93 -0.42 0.19 16 42 H 0.36 8.14 5.41 -40.82 -0.22 7.92 16 43 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 355.68 15.07 5.36 5.36 Total: -1.00 -35.23 355.68 -7.91 -43.14 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -7.20 Total: 6.53 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -0.77 Total: -3.21 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.20 Total: -54.93 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -0.78 Total: -14.11 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -4.71 Total: 17.21 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.23 -7.91 -43.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753881642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.613 kcal (2) G-P(sol) polarization free energy of solvation -35.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds