Wall clock time and date at job start Tue Mar 31 2020 06:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50706 * 119.99800 * 2 1 4 4 O 1.42896 * 109.47094 * 134.99952 * 3 2 1 5 5 C 1.42896 * 114.00142 * 179.97438 * 4 3 2 6 6 C 1.50697 * 109.47673 * 179.97438 * 5 4 3 7 7 O 1.21289 * 119.99480 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00581 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00301 * 180.02562 * 8 6 5 10 10 H 1.08994 * 110.01625 * 33.60526 * 9 8 6 11 11 C 1.54269 * 110.07027 * 272.19145 * 9 8 6 12 12 C 1.54899 * 104.19583 * 264.30319 * 11 9 8 13 13 C 1.54887 * 102.74441 * 322.06045 * 12 11 9 14 14 C 1.53872 * 110.03324 * 154.99933 * 9 8 6 15 15 H 1.09004 * 110.03280 * 0.02562 * 14 9 8 16 16 C 1.52993 * 110.03410 * 238.61446 * 14 9 8 17 17 N 1.46496 * 109.47551 * 174.99868 * 16 14 9 18 18 C 1.36934 * 120.00548 * 179.97438 * 17 16 14 19 19 H 1.08004 * 119.99288 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00389 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00257 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99929 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47174 * 270.00277 * 22 20 18 24 24 H 1.48501 * 109.47062 * 30.00228 * 22 20 18 25 25 H 1.48499 * 109.46981 * 150.00382 * 22 20 18 26 26 H 1.07999 * 120.00082 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.99599 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.00231 * 179.97438 * 2 1 3 29 29 H 1.08993 * 109.46981 * 14.99700 * 3 2 1 30 30 H 1.08997 * 109.46561 * 254.99740 * 3 2 1 31 31 H 1.08998 * 109.46753 * 59.99694 * 5 4 3 32 32 H 1.09004 * 109.47173 * 300.00132 * 5 4 3 33 33 H 0.97002 * 119.99431 * 0.02562 * 8 6 5 34 34 H 1.09002 * 110.49085 * 22.97725 * 11 9 8 35 35 H 1.08997 * 110.48925 * 145.62461 * 11 9 8 36 36 H 1.09001 * 110.75392 * 80.36769 * 12 11 9 37 37 H 1.08994 * 110.75352 * 203.56156 * 12 11 9 38 38 H 1.09004 * 110.48458 * 279.26354 * 13 12 11 39 39 H 1.08998 * 110.48937 * 156.62409 * 13 12 11 40 40 H 1.09004 * 109.46862 * 55.00066 * 16 14 9 41 41 H 1.09004 * 109.46998 * 295.00544 * 16 14 9 42 42 H 0.96999 * 119.99694 * 0.02562 * 17 16 14 43 43 H 0.97001 * 119.99885 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9084 2.4350 1.0321 6 6 4.9939 2.2571 2.0621 7 8 5.0891 1.2108 2.6682 8 7 5.8590 3.2604 2.3098 9 6 6.9145 3.0873 3.3107 10 1 7.2532 2.0513 3.3203 11 6 6.3912 3.4851 4.7063 12 6 6.8456 4.9560 4.8774 13 6 8.2470 4.9596 4.2177 14 6 8.0945 4.0247 3.0001 15 1 7.8815 4.6089 2.1048 16 6 9.3737 3.2093 2.8020 17 7 10.4617 4.0997 2.3903 18 6 11.7107 3.5907 2.1534 19 1 11.8935 2.5326 2.2696 20 6 12.7417 4.4345 1.7639 21 7 13.9421 3.9451 1.5357 22 14 12.4253 6.2645 1.5622 23 1 12.0031 6.5429 0.1660 24 1 11.3521 6.6873 2.4975 25 1 13.6691 7.0179 1.8628 26 1 -0.5400 0.9353 0.0004 27 1 -0.5399 -0.9353 0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3855 2.1161 0.2659 30 1 2.4755 1.4867 -0.9926 31 1 3.2689 3.2696 1.3191 32 1 4.3587 2.6397 0.0607 33 1 5.7826 4.0973 1.8253 34 1 5.3039 3.4154 4.7403 35 1 6.8389 2.8556 5.4754 36 1 6.1703 5.6323 4.3533 37 1 6.9117 5.2196 5.9329 38 1 8.9944 4.5682 4.9078 39 1 8.5142 5.9658 3.8950 40 1 9.2090 2.4565 2.0310 41 1 9.6403 2.7184 3.7380 42 1 10.2976 5.0500 2.2863 43 1 14.6624 4.5348 1.2631 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753881642.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:40 Heat of formation + Delta-G solvation = -80.686952 kcal Electronic energy + Delta-G solvation = -21871.654456 eV Core-core repulsion = 18530.488398 eV Total energy + Delta-G solvation = -3341.166058 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.19540 -39.55607 -38.50316 -36.47172 -34.77493 -34.62632 -33.53151 -30.64003 -30.08830 -28.14676 -26.56368 -25.99730 -23.68088 -22.31023 -21.24595 -21.09120 -20.69999 -19.67304 -18.22897 -17.93336 -17.35882 -17.14135 -16.50345 -16.27324 -16.15498 -15.71292 -15.48810 -15.11145 -14.92906 -14.69331 -14.42682 -14.08588 -13.71410 -13.45683 -13.19248 -13.13601 -12.89384 -12.56261 -12.42713 -12.14553 -11.93570 -11.88610 -11.83822 -11.77058 -11.69802 -11.46688 -11.00029 -10.97716 -10.81677 -10.26197 -10.07660 -9.32091 -8.03359 -5.38214 1.19525 1.37460 1.43149 1.50756 1.57986 1.91249 2.48844 3.08808 3.26963 3.36975 3.64349 3.71845 3.89604 3.93278 4.07329 4.17329 4.24895 4.30187 4.35228 4.45478 4.46709 4.50075 4.60446 4.60770 4.65603 4.75777 4.97410 4.98329 4.99902 5.05124 5.16220 5.24376 5.32483 5.49480 5.58723 5.65897 5.70066 5.73700 6.09797 6.19864 6.57820 7.06832 7.25720 7.80722 8.03754 9.18380 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022563 B = 0.003057 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1240.671241 B = 9156.208986 C = 9764.955877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.179 4.179 3 C 0.084 3.916 4 O -0.399 6.399 5 C 0.046 3.954 6 C 0.507 3.493 7 O -0.577 6.577 8 N -0.704 5.704 9 C 0.152 3.848 10 H 0.063 0.937 11 C -0.126 4.126 12 C -0.109 4.109 13 C -0.117 4.117 14 C -0.093 4.093 15 H 0.095 0.905 16 C 0.163 3.837 17 N -0.751 5.751 18 C -0.240 4.240 19 H 0.048 0.952 20 C -0.068 4.068 21 N -0.986 5.986 22 Si 0.962 3.038 23 H -0.275 1.275 24 H -0.243 1.243 25 H -0.297 1.297 26 H 0.114 0.886 27 H 0.113 0.887 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.418 0.582 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.012 0.988 41 H 0.019 0.981 42 H 0.370 0.630 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.678 4.397 -0.796 30.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.198 4.198 3 C 0.009 3.991 4 O -0.318 6.318 5 C -0.033 4.033 6 C 0.294 3.706 7 O -0.456 6.456 8 N -0.358 5.358 9 C 0.046 3.954 10 H 0.081 0.919 11 C -0.165 4.165 12 C -0.147 4.147 13 C -0.155 4.155 14 C -0.113 4.113 15 H 0.113 0.887 16 C 0.036 3.964 17 N -0.397 5.397 18 C -0.371 4.371 19 H 0.066 0.934 20 C -0.259 4.259 21 N -0.636 5.636 22 Si 0.788 3.212 23 H -0.201 1.201 24 H -0.167 1.167 25 H -0.223 1.223 26 H 0.132 0.868 27 H 0.131 0.869 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.255 0.745 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.030 0.970 41 H 0.037 0.963 42 H 0.203 0.797 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -29.438 3.308 -0.270 29.625 hybrid contribution 0.816 0.825 -0.589 1.301 sum -28.623 4.133 -0.859 28.932 Atomic orbital electron populations 1.24056 0.94921 1.03546 0.97728 1.22806 0.96414 0.98120 1.02429 1.21793 0.88314 0.96620 0.92415 1.88004 1.45530 1.36573 1.61698 1.22352 0.92640 0.89509 0.98765 1.20963 0.82975 0.83207 0.83493 1.90722 1.73502 1.29181 1.52165 1.45883 1.30739 1.17590 1.41588 1.21408 0.86312 0.99206 0.88480 0.91874 1.22694 1.00839 0.97679 0.95254 1.22468 0.95301 0.95475 1.01420 1.22408 0.98084 0.99114 0.95892 1.22124 0.92384 0.96313 1.00441 0.88706 1.20820 0.86846 0.92361 0.96334 1.42573 1.06843 1.06519 1.83766 1.19011 0.87020 0.93569 1.37500 0.93390 1.25630 0.94974 1.03471 1.01818 1.69915 1.02302 1.36499 1.54923 0.85304 0.77555 0.79487 0.78814 1.20136 1.16744 1.22333 0.86762 0.86863 0.87932 0.90472 0.90748 0.86628 0.87511 0.74460 0.91078 0.91424 0.89597 0.90406 0.92532 0.90816 0.96984 0.96281 0.79658 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.85 14.31 67.78 0.97 -0.88 16 2 C -0.18 -2.80 9.89 25.64 0.25 -2.54 16 3 C 0.08 1.20 6.35 71.24 0.45 1.65 16 4 O -0.40 -8.92 9.86 -129.94 -1.28 -10.21 16 5 C 0.05 0.73 6.42 71.23 0.46 1.19 16 6 C 0.51 12.37 7.90 87.66 0.69 13.06 16 7 O -0.58 -20.77 16.15 15.98 0.26 -20.51 16 8 N -0.70 -13.95 5.03 -439.11 -2.21 -16.16 16 9 C 0.15 3.82 2.90 45.72 0.13 3.95 16 10 H 0.06 2.03 7.09 -2.39 -0.02 2.02 16 11 C -0.13 -2.74 6.54 31.67 0.21 -2.53 16 12 C -0.11 -1.97 6.91 31.89 0.22 -1.75 16 13 C -0.12 -2.84 6.08 31.67 0.19 -2.65 16 14 C -0.09 -2.51 2.73 -10.07 -0.03 -2.54 16 15 H 0.09 2.25 7.62 -2.39 -0.02 2.23 16 16 C 0.16 6.31 5.31 86.38 0.46 6.77 16 17 N -0.75 -34.89 5.25 -343.47 -1.80 -36.70 16 18 C -0.24 -14.00 10.47 84.03 0.88 -13.12 16 19 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 20 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 21 N -0.99 -64.05 13.97 21.65 0.30 -63.75 16 22 Si 0.96 44.58 27.74 68.60 1.90 46.49 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 24 H -0.24 -9.82 6.52 99.48 0.65 -9.18 16 25 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 26 H 0.11 0.87 7.90 -2.91 -0.02 0.85 16 27 H 0.11 1.02 8.06 -2.91 -0.02 1.00 16 28 H 0.10 1.85 8.06 -2.91 -0.02 1.82 16 29 H 0.08 0.74 7.86 -2.39 -0.02 0.72 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.42 5.13 8.32 -92.71 -0.77 4.36 16 34 H 0.07 1.50 8.04 -2.39 -0.02 1.48 16 35 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 38 H 0.06 1.61 7.76 -2.39 -0.02 1.59 16 39 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 41 H 0.02 0.79 8.00 -2.39 -0.02 0.77 16 42 H 0.37 15.76 5.41 -92.71 -0.50 15.26 16 43 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -80.68 355.68 2.18 -78.50 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -0.34 Total: 25.28 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 5.36 Total: -2.94 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -3.71 Total: -116.61 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -1.02 Total: -30.71 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.90 Total: 46.49 kcal Total: -80.68 2.18 -78.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753881642.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.191 kcal (2) G-P(sol) polarization free energy of solvation -80.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds