Wall clock time and date at job start Tue Mar 31 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 O 1.42897 * 109.47335 * 134.99934 * 3 2 1 5 5 C 1.42894 * 114.00232 * 180.02562 * 4 3 2 6 6 C 1.50703 * 109.47223 * 179.97438 * 5 4 3 7 7 O 1.21273 * 119.99925 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99757 * 180.02562 * 6 5 4 9 9 C 1.46502 * 119.99829 * 180.02562 * 8 6 5 10 10 H 1.09002 * 110.01470 * 325.69933 * 9 8 6 11 11 C 1.53869 * 110.03545 * 87.08646 * 9 8 6 12 12 C 1.54371 * 106.54372 * 119.27181 * 11 9 8 13 13 C 1.54891 * 104.21924 * 336.42883 * 12 11 9 14 14 C 1.54265 * 110.03168 * 204.30972 * 9 8 6 15 15 H 1.09004 * 110.48745 * 145.64448 * 14 9 8 16 16 C 1.52999 * 110.48684 * 23.12942 * 14 9 8 17 17 N 1.46500 * 109.47173 * 174.99949 * 16 14 9 18 18 C 1.36938 * 120.00066 * 179.97438 * 17 16 14 19 19 H 1.07997 * 120.00005 * 0.02562 * 18 17 16 20 20 C 1.38815 * 119.99713 * 180.02562 * 18 17 16 21 21 N 1.31615 * 120.00095 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99550 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47060 * 60.00450 * 22 20 18 24 24 H 1.48508 * 109.46815 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47188 * 300.00125 * 22 20 18 26 26 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 27 27 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 28 28 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.46998 * 255.00367 * 3 2 1 30 30 H 1.09002 * 109.46470 * 15.00112 * 3 2 1 31 31 H 1.08996 * 109.47111 * 300.00026 * 5 4 3 32 32 H 1.09001 * 109.47034 * 59.99921 * 5 4 3 33 33 H 0.96999 * 120.00361 * 359.97438 * 8 6 5 34 34 H 1.09001 * 110.03717 * 238.56927 * 11 9 8 35 35 H 1.09003 * 110.03199 * 0.02562 * 11 9 8 36 36 H 1.09002 * 110.49472 * 217.73409 * 12 11 9 37 37 H 1.09004 * 110.57339 * 95.15940 * 12 11 9 38 38 H 1.09000 * 110.75149 * 279.61482 * 13 12 11 39 39 H 1.08993 * 110.76048 * 156.23787 * 13 12 11 40 40 H 1.08996 * 109.47177 * 295.00430 * 16 14 9 41 41 H 1.09005 * 109.47005 * 55.00506 * 16 14 9 42 42 H 0.97000 * 119.99849 * 0.02562 * 17 16 14 43 43 H 0.97003 * 120.00022 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9077 2.4352 1.0328 6 6 4.9933 2.2571 2.0629 7 8 5.0890 1.2107 2.6682 8 7 5.8578 3.2609 2.3112 9 6 6.9134 3.0876 3.3121 10 1 6.5540 2.4617 4.1289 11 6 8.1540 2.4479 2.6645 12 6 9.3093 3.4572 2.8361 13 6 8.5991 4.8236 3.0030 14 6 7.3574 4.4615 3.8552 15 1 7.6266 4.3865 4.9088 16 6 6.2493 5.4982 3.6594 17 7 6.6454 6.7610 4.2877 18 6 5.8064 7.8422 4.2401 19 1 4.8526 7.7639 3.7397 20 6 6.1820 9.0388 4.8351 21 7 7.3447 9.1343 5.4444 22 14 5.0372 10.5135 4.7707 23 1 3.7522 10.1719 5.4321 24 1 5.6669 11.6600 5.4739 25 1 4.7827 10.8812 3.3547 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5400 -0.9354 -0.0045 28 1 1.8500 -0.9353 -0.0004 29 1 2.4755 1.4868 -0.9927 30 1 1.3854 2.1160 0.2660 31 1 4.3579 2.6408 0.0617 32 1 3.2677 3.2694 1.3205 33 1 5.7815 4.0978 1.8267 34 1 8.3972 1.5120 3.1675 35 1 7.9708 2.2667 1.6053 36 1 9.9453 3.4635 1.9509 37 1 9.8955 3.2211 3.7242 38 1 8.2995 5.2239 2.0345 39 1 9.2388 5.5293 3.5328 40 1 6.0857 5.6583 2.5937 41 1 5.3288 5.1372 4.1182 42 1 7.5023 6.8314 4.7368 43 1 7.6073 9.9706 5.8598 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753881643.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:45 Heat of formation + Delta-G solvation = -55.989143 kcal Electronic energy + Delta-G solvation = -22081.879894 eV Core-core repulsion = 18741.784813 eV Total energy + Delta-G solvation = -3340.095081 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.12168 -38.50127 -37.41838 -34.41956 -34.09189 -33.45919 -31.44612 -29.21776 -28.57165 -27.09246 -25.57264 -24.48816 -22.34821 -21.07062 -20.33140 -20.20596 -19.23444 -17.57217 -17.26218 -16.62459 -16.57288 -15.85104 -15.31434 -14.94318 -14.78916 -14.50045 -14.13471 -13.91738 -13.58905 -13.23130 -13.07555 -12.86163 -12.54142 -12.37876 -12.21785 -11.52062 -11.29947 -11.23373 -10.88188 -10.87628 -10.80098 -10.50416 -10.37651 -10.34395 -10.23281 -10.02836 -9.74219 -9.70541 -9.59193 -8.93738 -8.90114 -6.95962 -5.79815 -3.08692 1.82500 2.66491 2.87040 3.41254 3.45836 3.46887 3.90746 4.50865 4.61459 4.71360 4.79111 4.80593 4.85455 4.95526 5.01034 5.07985 5.09774 5.21803 5.45771 5.51648 5.54506 5.63456 5.68088 5.78394 5.84849 5.92711 6.05731 6.10750 6.20884 6.25325 6.28443 6.31665 6.48099 6.52516 6.64262 6.72903 6.77736 6.85717 7.58871 7.65202 8.29585 8.38977 9.50237 10.07876 10.42528 11.42897 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013587 B = 0.003770 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.361963 B = 7424.952539 C = 9241.103147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.085 3.915 4 O -0.360 6.360 5 C 0.042 3.958 6 C 0.514 3.486 7 O -0.526 6.526 8 N -0.717 5.717 9 C 0.150 3.850 10 H 0.089 0.911 11 C -0.131 4.131 12 C -0.125 4.125 13 C -0.112 4.112 14 C -0.107 4.107 15 H 0.088 0.912 16 C 0.164 3.836 17 N -0.730 5.730 18 C -0.242 4.242 19 H 0.069 0.931 20 C -0.012 4.012 21 N -0.933 5.933 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.117 0.883 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.404 0.596 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.014 0.986 41 H 0.020 0.980 42 H 0.385 0.615 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 -15.000 -12.035 19.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.167 4.167 3 C 0.009 3.991 4 O -0.278 6.278 5 C -0.038 4.038 6 C 0.299 3.701 7 O -0.401 6.401 8 N -0.372 5.372 9 C 0.045 3.955 10 H 0.107 0.893 11 C -0.170 4.170 12 C -0.163 4.163 13 C -0.150 4.150 14 C -0.126 4.126 15 H 0.106 0.894 16 C 0.036 3.964 17 N -0.374 5.374 18 C -0.373 4.373 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 H 0.116 0.884 27 H 0.122 0.878 28 H 0.135 0.865 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.242 0.758 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.032 0.968 41 H 0.038 0.962 42 H 0.218 0.782 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.849 -15.815 -11.507 20.151 hybrid contribution -0.457 1.582 -0.284 1.671 sum -5.306 -14.234 -11.791 19.230 Atomic orbital electron populations 1.23845 0.95518 1.02329 1.00075 1.22716 0.95612 0.98186 1.00183 1.21623 0.88871 0.96227 0.92368 1.88032 1.44293 1.35003 1.60456 1.22239 0.93460 0.89296 0.98802 1.20167 0.82225 0.84154 0.83601 1.90708 1.72523 1.27016 1.49848 1.46160 1.31635 1.17273 1.42087 1.21618 0.86468 0.97063 0.90332 0.89330 1.22588 0.94714 0.98646 1.01019 1.22409 0.97139 0.95361 1.01403 1.22506 0.96253 0.96213 1.00028 1.22480 0.96564 0.93075 1.00508 0.89362 1.20574 0.94177 0.86311 0.95294 1.42332 1.21556 1.07207 1.66277 1.19162 0.98802 0.89733 1.29627 0.91323 1.24738 0.97236 0.98021 1.00857 1.69644 1.20908 1.26222 1.41315 0.86274 0.79967 0.82505 0.77459 1.21263 1.21670 1.21285 0.88357 0.87752 0.86462 0.92110 0.92446 0.90252 0.89952 0.75843 0.91438 0.91582 0.91942 0.91631 0.91474 0.90796 0.96798 0.96220 0.78173 0.93422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 14.31 29.02 0.42 -0.92 16 2 C -0.15 -1.33 9.89 -36.02 -0.36 -1.68 16 3 C 0.09 0.79 6.35 36.01 0.23 1.01 16 4 O -0.36 -4.63 9.86 -55.14 -0.54 -5.17 16 5 C 0.04 0.46 6.42 36.01 0.23 0.69 16 6 C 0.51 7.29 7.90 -10.98 -0.09 7.20 16 7 O -0.53 -9.64 16.17 -14.35 -0.23 -9.87 16 8 N -0.72 -9.29 4.36 -52.72 -0.23 -9.52 16 9 C 0.15 2.09 3.10 -66.81 -0.21 1.88 16 10 H 0.09 1.36 7.59 -51.93 -0.39 0.97 16 11 C -0.13 -1.62 6.60 -25.56 -0.17 -1.79 16 12 C -0.13 -1.49 6.83 -25.02 -0.17 -1.66 16 13 C -0.11 -1.61 6.20 -24.74 -0.15 -1.76 16 14 C -0.11 -1.65 2.84 -88.96 -0.25 -1.91 16 15 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 16 C 0.16 3.10 4.74 -4.04 -0.02 3.08 16 17 N -0.73 -17.80 5.49 -59.91 -0.33 -18.12 16 18 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 19 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -27.77 13.06 55.49 0.72 -27.04 16 22 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H 0.10 0.63 7.90 -52.49 -0.41 0.22 16 27 H 0.10 0.63 8.06 -52.48 -0.42 0.21 16 28 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.46 7.86 -51.93 -0.41 0.05 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.40 4.69 6.54 -40.82 -0.27 4.42 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.81 7.92 -51.93 -0.41 0.39 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.97 7.97 -51.93 -0.41 0.55 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.01 0.26 6.41 -51.93 -0.33 -0.08 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.38 9.90 7.64 -40.82 -0.31 9.59 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 355.82 15.07 5.36 5.36 Total: -1.00 -33.10 355.82 -8.21 -41.31 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -7.15 Total: 9.10 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -0.79 Total: -3.06 kcal Atomic # 7 Polarization: -54.85 SS G_CDS: 0.17 Total: -54.69 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.78 Total: -15.04 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.10 -8.21 -41.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753881643.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.678 kcal (2) G-P(sol) polarization free energy of solvation -33.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds