Wall clock time and date at job start Tue Mar 31 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00415 * 2 1 4 4 O 1.42899 * 109.47140 * 134.99958 * 3 2 1 5 5 C 1.42903 * 113.99629 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.46878 * 179.97438 * 5 4 3 7 7 O 1.21280 * 119.99781 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99795 * 179.97438 * 6 5 4 9 9 C 1.46497 * 119.99566 * 180.02562 * 8 6 5 10 10 H 1.08998 * 110.01849 * 33.61203 * 9 8 6 11 11 C 1.54264 * 110.03600 * 272.17050 * 9 8 6 12 12 C 1.54890 * 104.19687 * 217.11066 * 11 9 8 13 13 C 1.54884 * 102.75114 * 37.93912 * 12 11 9 14 14 C 1.53875 * 110.02947 * 155.00288 * 9 8 6 15 15 H 1.09002 * 110.03552 * 238.56600 * 14 9 8 16 16 C 1.53001 * 110.03308 * 359.95088 * 14 9 8 17 17 N 1.46500 * 109.47232 * 185.00060 * 16 14 9 18 18 C 1.36927 * 120.00274 * 180.02562 * 17 16 14 19 19 H 1.08009 * 119.99831 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00518 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00336 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 119.99730 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46980 * 90.00293 * 22 20 18 24 24 H 1.48494 * 109.47108 * 210.00223 * 22 20 18 25 25 H 1.48501 * 109.46982 * 330.00139 * 22 20 18 26 26 H 1.07999 * 120.00082 * 180.02562 * 1 2 3 27 27 H 1.08003 * 119.99875 * 359.97438 * 1 2 3 28 28 H 1.08003 * 119.99875 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.46405 * 14.99943 * 3 2 1 30 30 H 1.09004 * 109.47198 * 255.00428 * 3 2 1 31 31 H 1.09002 * 109.47382 * 59.99956 * 5 4 3 32 32 H 1.09001 * 109.46938 * 299.99942 * 5 4 3 33 33 H 0.96995 * 120.00011 * 0.02562 * 8 6 5 34 34 H 1.09004 * 110.48384 * 335.78168 * 11 9 8 35 35 H 1.09001 * 110.48975 * 98.42744 * 11 9 8 36 36 H 1.08999 * 110.75489 * 279.62282 * 12 11 9 37 37 H 1.09004 * 110.91235 * 156.32783 * 12 11 9 38 38 H 1.08997 * 110.48736 * 203.37956 * 13 12 11 39 39 H 1.09001 * 110.48583 * 80.73420 * 13 12 11 40 40 H 1.08990 * 109.46896 * 305.00073 * 16 14 9 41 41 H 1.08996 * 109.47025 * 65.00313 * 16 14 9 42 42 H 0.96998 * 119.99938 * 359.97438 * 17 16 14 43 43 H 0.96994 * 120.00088 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1268 1.2412 0.9527 5 6 3.9078 2.4352 1.0328 6 6 4.9934 2.2571 2.0628 7 8 5.0891 1.2105 2.6682 8 7 5.8586 3.2604 2.3104 9 6 6.9142 3.0870 3.3113 10 1 7.2528 2.0510 3.3208 11 6 6.3903 3.4856 4.7064 12 6 7.6015 4.1722 5.3851 13 6 8.2462 4.9600 4.2178 14 6 8.0942 4.0245 3.0005 15 1 9.0057 3.4435 2.8601 16 6 7.7960 4.8433 1.7429 17 7 8.9720 5.6425 1.3903 18 6 8.9398 6.4608 0.2929 19 1 8.0475 6.5167 -0.3131 20 6 10.0543 7.2178 -0.0415 21 7 10.0231 8.0047 -1.0961 22 14 11.5979 7.1206 1.0060 23 1 12.4810 6.0452 0.4876 24 1 12.3154 8.4196 0.9518 25 1 11.2242 6.8199 2.4114 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3855 2.1160 0.2660 30 1 2.4756 1.4867 -0.9927 31 1 3.2679 3.2694 1.3204 32 1 4.3581 2.6406 0.0616 33 1 5.7822 4.0972 1.8259 34 1 5.5576 4.1832 4.6163 35 1 6.0892 2.6011 5.2679 36 1 8.2952 3.4298 5.7797 37 1 7.2732 4.8496 6.1735 38 1 9.2994 5.1516 4.4226 39 1 7.7131 5.8956 4.0486 40 1 7.5541 4.1704 0.9203 41 1 6.9506 5.5047 1.9320 42 1 9.7733 5.5927 1.9347 43 1 10.8017 8.5339 -1.3296 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753881644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:49 Heat of formation + Delta-G solvation = -49.143104 kcal Electronic energy + Delta-G solvation = -22132.950960 eV Core-core repulsion = 18793.152745 eV Total energy + Delta-G solvation = -3339.798215 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.18917 -38.57816 -37.49105 -34.58592 -34.09203 -33.65125 -31.60471 -29.33295 -28.95405 -27.06004 -25.55000 -24.68811 -22.21800 -21.03545 -20.57377 -20.18767 -19.25328 -17.73594 -17.47458 -16.77474 -16.53736 -15.96240 -15.31891 -15.19101 -14.77421 -14.40525 -14.32017 -13.93639 -13.66310 -13.37455 -13.23984 -12.71446 -12.48698 -12.38346 -12.27110 -11.82109 -11.66552 -11.26245 -11.00264 -10.99243 -10.92281 -10.55698 -10.52772 -10.38359 -10.23080 -10.09917 -9.76646 -9.64755 -9.59535 -9.03750 -8.90145 -7.30069 -5.82772 -3.18693 1.82555 2.62936 2.84466 3.33497 3.36544 3.41922 3.89061 4.49729 4.54380 4.66425 4.70248 4.78561 4.83060 4.95445 4.98963 5.01589 5.13285 5.20658 5.28259 5.43480 5.51899 5.54310 5.55273 5.63277 5.73601 5.76123 5.85798 5.97317 6.06259 6.18278 6.25488 6.28751 6.31427 6.40925 6.48675 6.59346 6.65452 6.83351 7.53822 7.91723 8.25372 8.36124 9.14843 9.87392 10.07034 11.35474 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017544 B = 0.003603 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.583135 B = 7769.729536 C = 9114.184529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.147 4.147 3 C 0.085 3.915 4 O -0.360 6.360 5 C 0.041 3.959 6 C 0.514 3.486 7 O -0.526 6.526 8 N -0.721 5.721 9 C 0.152 3.848 10 H 0.091 0.909 11 C -0.132 4.132 12 C -0.124 4.124 13 C -0.115 4.115 14 C -0.112 4.112 15 H 0.082 0.918 16 C 0.161 3.839 17 N -0.752 5.752 18 C -0.247 4.247 19 H 0.090 0.910 20 C 0.005 3.995 21 N -0.933 5.933 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.276 1.276 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.118 0.882 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.408 0.592 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.030 0.970 41 H 0.026 0.974 42 H 0.362 0.638 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.478 -11.159 7.548 19.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.166 4.166 3 C 0.009 3.991 4 O -0.278 6.278 5 C -0.039 4.039 6 C 0.299 3.701 7 O -0.402 6.402 8 N -0.376 5.376 9 C 0.047 3.953 10 H 0.109 0.891 11 C -0.171 4.171 12 C -0.162 4.162 13 C -0.153 4.153 14 C -0.132 4.132 15 H 0.100 0.900 16 C 0.033 3.967 17 N -0.398 5.398 18 C -0.377 4.377 19 H 0.107 0.893 20 C -0.191 4.191 21 N -0.581 5.581 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.202 1.202 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.136 0.864 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.246 0.754 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.048 0.952 41 H 0.044 0.956 42 H 0.195 0.805 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.464 -11.963 7.870 20.353 hybrid contribution 1.107 0.734 0.132 1.335 sum -13.357 -11.229 8.002 19.197 Atomic orbital electron populations 1.23831 0.95504 1.02281 1.00304 1.22729 0.95603 0.98241 0.99982 1.21630 0.88801 0.96125 0.92573 1.88026 1.44329 1.35046 1.60431 1.22243 0.93307 0.89128 0.99174 1.20200 0.82453 0.84039 0.83391 1.90706 1.72221 1.27091 1.50151 1.46277 1.31476 1.17640 1.42255 1.21613 0.86402 1.00396 0.86892 0.89138 1.22768 0.98313 1.00527 0.95451 1.22477 0.96973 0.99087 0.97659 1.22405 1.01162 0.98433 0.93308 1.22278 0.97630 0.96582 0.96673 0.89962 1.20671 0.90818 0.92242 0.92924 1.42670 1.12459 1.52093 1.32558 1.19029 1.00385 1.16491 1.01756 0.89261 1.24673 0.97827 0.98907 0.97646 1.69696 1.30196 1.30794 1.27413 0.86548 0.84432 0.77186 0.80370 1.21062 1.21713 1.20236 0.87766 0.88403 0.86428 0.92524 0.91891 0.90157 0.89810 0.75374 0.91192 0.91354 0.91544 0.91514 0.91550 0.90737 0.95217 0.95641 0.80531 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 14.31 29.01 0.42 -0.90 16 2 C -0.15 -1.32 9.89 -36.03 -0.36 -1.67 16 3 C 0.08 0.79 6.35 36.01 0.23 1.02 16 4 O -0.36 -4.62 9.86 -55.14 -0.54 -5.16 16 5 C 0.04 0.45 6.42 36.01 0.23 0.68 16 6 C 0.51 7.18 7.90 -10.98 -0.09 7.09 16 7 O -0.53 -9.44 16.15 -14.35 -0.23 -9.67 16 8 N -0.72 -9.17 4.39 -52.72 -0.23 -9.40 16 9 C 0.15 2.02 3.23 -66.81 -0.22 1.80 16 10 H 0.09 1.30 7.56 -51.93 -0.39 0.91 16 11 C -0.13 -1.57 6.53 -25.07 -0.16 -1.73 16 12 C -0.12 -1.39 6.91 -24.74 -0.17 -1.56 16 13 C -0.12 -1.56 6.09 -25.07 -0.15 -1.71 16 14 C -0.11 -1.62 2.96 -89.50 -0.26 -1.89 16 15 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 16 C 0.16 2.83 4.19 -4.04 -0.02 2.81 16 17 N -0.75 -17.00 5.25 -59.91 -0.31 -17.32 16 18 C -0.25 -6.74 10.47 -15.06 -0.16 -6.90 16 19 H 0.09 2.59 8.06 -52.48 -0.42 2.16 16 20 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 21 N -0.93 -28.78 13.97 55.49 0.78 -28.01 16 22 Si 0.88 21.67 27.74 -169.99 -4.71 16.96 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 26 H 0.10 0.62 8.06 -52.49 -0.42 0.20 16 27 H 0.10 0.60 7.90 -52.48 -0.41 0.19 16 28 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 29 H 0.06 0.44 7.86 -51.93 -0.41 0.03 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.41 4.76 5.90 -40.82 -0.24 4.52 16 34 H 0.07 0.81 8.05 -51.93 -0.42 0.40 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.08 7.76 -51.93 -0.40 0.68 16 40 H 0.03 0.54 7.42 -51.93 -0.39 0.15 16 41 H 0.03 0.44 7.10 -51.93 -0.37 0.07 16 42 H 0.36 8.07 5.41 -40.82 -0.22 7.85 16 43 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -33.69 351.43 -7.84 -41.53 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.07 Total: 8.66 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -0.81 Total: -2.90 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: 0.23 Total: -54.73 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.78 Total: -14.83 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.71 Total: 16.96 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.69 -7.84 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753881644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.609 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds