Wall clock time and date at job start Tue Mar 31 2020 06:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 115.56294 * 2 1 4 4 C 1.52994 * 117.49961 * 214.30396 * 2 1 3 5 5 C 1.52998 * 60.00296 * 252.50955 * 4 2 1 6 6 H 1.09003 * 117.49870 * 107.50984 * 5 4 2 7 7 C 1.50701 * 117.50136 * 252.50908 * 5 4 2 8 8 O 1.21285 * 119.99648 * 68.60837 * 7 5 4 9 9 N 1.34772 * 120.00177 * 248.60479 * 7 5 4 10 10 C 1.46494 * 120.00054 * 179.97438 * 9 7 5 11 11 C 1.53007 * 109.47179 * 176.00723 * 10 9 7 12 12 N 1.46505 * 109.53966 * 54.90913 * 11 10 9 13 13 C 1.36936 * 120.00218 * 62.95137 * 12 11 10 14 14 H 1.08001 * 119.99900 * 353.46406 * 13 12 11 15 15 C 1.38805 * 120.00097 * 173.46126 * 13 12 11 16 16 N 1.31622 * 120.00165 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00229 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47314 * 59.99796 * 17 15 13 19 19 H 1.48497 * 109.46800 * 300.00029 * 17 15 13 20 20 H 1.48499 * 109.47330 * 179.97438 * 17 15 13 21 21 C 1.53176 * 109.54236 * 175.08165 * 11 10 9 22 22 C 1.53287 * 109.06307 * 176.85922 * 21 11 10 23 23 O 1.42909 * 109.45645 * 302.44525 * 22 21 11 24 24 C 1.42902 * 114.09863 * 61.15818 * 23 22 21 25 25 C 1.53095 * 109.41625 * 298.84311 * 24 23 22 26 26 H 1.08996 * 109.46703 * 274.31794 * 1 2 3 27 27 H 1.08997 * 109.46855 * 34.31801 * 1 2 3 28 28 H 1.09001 * 109.46702 * 154.31679 * 1 2 3 29 29 H 1.09006 * 117.50312 * 145.02488 * 4 2 1 30 30 H 1.08996 * 117.49921 * 0.02562 * 4 2 1 31 31 H 0.97002 * 119.99972 * 0.02562 * 9 7 5 32 32 H 1.09004 * 109.46884 * 56.01602 * 10 9 7 33 33 H 1.08993 * 109.47337 * 296.01060 * 10 9 7 34 34 H 0.96999 * 119.99764 * 242.95573 * 12 11 10 35 35 H 0.97002 * 120.00112 * 0.02562 * 16 15 13 36 36 H 1.08998 * 109.52523 * 296.84335 * 21 11 10 37 37 H 1.09000 * 109.52526 * 57.03533 * 21 11 10 38 38 H 1.08998 * 109.45818 * 182.44868 * 22 21 11 39 39 H 1.08996 * 109.46620 * 62.44479 * 22 21 11 40 40 H 1.08996 * 109.48309 * 178.85480 * 24 23 22 41 41 H 1.09007 * 109.48811 * 58.83052 * 24 23 22 42 42 H 1.08999 * 109.51793 * 297.70374 * 25 24 23 43 43 H 1.09002 * 109.57565 * 177.54825 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2365 -1.1210 -0.7648 5 6 2.2365 -1.1209 0.7652 6 1 1.6116 -1.8586 1.2685 7 6 3.5293 -0.7810 1.4610 8 8 3.9719 0.3466 1.4010 9 7 4.1936 -1.7299 2.1499 10 6 5.4506 -1.3996 2.8258 11 6 5.9433 -2.6174 3.6101 12 7 6.0476 -3.7697 2.7114 13 6 6.9249 -3.7410 1.6602 14 1 7.4623 -2.8329 1.4301 15 6 7.1234 -4.8790 0.8907 16 7 6.4681 -5.9856 1.1709 17 14 8.3206 -4.8400 -0.5428 18 1 9.6782 -4.5023 -0.0449 19 1 7.8842 -3.8147 -1.5244 20 1 8.3515 -6.1721 -1.1983 21 6 7.3169 -2.3148 4.2168 22 6 7.7646 -3.5112 5.0641 23 8 6.7874 -3.7716 6.0738 24 6 5.4953 -4.1057 5.5630 25 6 4.9560 -2.9347 4.7374 26 1 -0.3632 0.0774 1.0247 27 1 -0.3633 0.8488 -0.5794 28 1 -0.3633 -0.9262 -0.4454 29 1 3.1717 -0.8753 -1.2681 30 1 1.6113 -1.8583 -1.2684 31 1 3.8398 -2.6318 2.1975 32 1 5.2869 -0.5680 3.5113 33 1 6.1985 -1.1178 2.0847 34 1 5.4953 -4.5529 2.8608 35 1 5.8462 -6.0057 1.9150 36 1 8.0378 -2.1415 3.4179 37 1 7.2495 -1.4277 4.8466 38 1 8.7217 -3.2854 5.5341 39 1 7.8709 -4.3886 4.4262 40 1 4.8177 -4.3083 6.3924 41 1 5.5716 -4.9910 4.9316 42 1 4.8411 -2.0601 5.3777 43 1 3.9897 -3.2032 4.3106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754734671.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:40 Heat of formation + Delta-G solvation = -56.147609 kcal Electronic energy + Delta-G solvation = -23463.447191 eV Core-core repulsion = 20123.345238 eV Total energy + Delta-G solvation = -3340.101953 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.90469 -39.11720 -36.79412 -35.76063 -33.63658 -32.31919 -30.72610 -28.93843 -28.91246 -27.01322 -24.05086 -23.80316 -22.94882 -21.85295 -20.70400 -19.71243 -18.88162 -17.40315 -17.02005 -15.92064 -15.72339 -15.45825 -15.20801 -14.65432 -14.36481 -14.19798 -14.02846 -13.71657 -13.47062 -13.22050 -12.91997 -12.68521 -12.32322 -12.03337 -11.99002 -11.78834 -11.59139 -11.40867 -10.90397 -10.85312 -10.67030 -10.30076 -10.15645 -10.06673 -10.05814 -9.92567 -9.46535 -9.30565 -9.20647 -8.83403 -8.50752 -7.19131 -6.19180 -3.22979 2.83623 3.47019 3.48699 3.52250 3.66024 3.95573 4.29744 4.57186 4.76899 4.81709 4.91912 5.06787 5.16797 5.26292 5.26925 5.32265 5.41688 5.48187 5.60898 5.61989 5.65173 5.68061 5.76525 5.90805 5.92621 6.00125 6.01957 6.03820 6.16252 6.22424 6.29365 6.31953 6.47672 6.49459 6.66930 6.67945 6.96674 7.63393 7.72703 7.99822 8.64170 8.65265 9.06551 9.93211 10.07299 11.27626 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012602 B = 0.006237 C = 0.004711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.369380 B = 4488.072505 C = 5941.810652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.127 4.127 3 H 0.115 0.885 4 C -0.147 4.147 5 C -0.187 4.187 6 H 0.119 0.881 7 C 0.538 3.462 8 O -0.558 6.558 9 N -0.697 5.697 10 C 0.119 3.881 11 C 0.194 3.806 12 N -0.723 5.723 13 C -0.325 4.325 14 H 0.064 0.936 15 C -0.037 4.037 16 N -0.940 5.940 17 Si 1.074 2.926 18 H -0.295 1.295 19 H -0.296 1.296 20 H -0.286 1.286 21 C -0.151 4.151 22 C 0.071 3.929 23 O -0.392 6.392 24 C 0.067 3.933 25 C -0.152 4.152 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.401 0.599 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.367 0.633 35 H 0.254 0.746 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.347 6.907 3.274 11.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.145 4.145 3 H 0.133 0.867 4 C -0.184 4.184 5 C -0.208 4.208 6 H 0.137 0.863 7 C 0.324 3.676 8 O -0.438 6.438 9 N -0.346 5.346 10 C -0.007 4.007 11 C 0.102 3.898 12 N -0.367 5.367 13 C -0.456 4.456 14 H 0.082 0.918 15 C -0.235 4.235 16 N -0.585 5.585 17 Si 0.905 3.095 18 H -0.223 1.223 19 H -0.224 1.224 20 H -0.211 1.211 21 C -0.191 4.191 22 C -0.006 4.006 23 O -0.311 6.311 24 C -0.010 4.010 25 C -0.190 4.190 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.237 0.763 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.201 0.799 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.154 6.954 2.151 10.206 hybrid contribution -0.920 0.225 0.936 1.332 sum -8.074 7.178 3.086 11.236 Atomic orbital electron populations 1.21385 0.92520 1.02033 1.01941 1.22345 0.94892 0.95129 1.02168 0.86701 1.23068 1.03036 1.01092 0.91205 1.22277 0.97994 1.04622 0.95940 0.86331 1.19572 0.84719 0.84821 0.78491 1.90640 1.69288 1.21517 1.62333 1.45667 1.23990 1.13088 1.51855 1.21793 0.85394 0.97526 0.96003 1.19770 0.92913 0.88363 0.88739 1.42481 1.48094 1.14942 1.31150 1.19850 1.19810 0.98575 1.07356 0.91805 1.25647 1.02813 0.91970 1.03107 1.70922 1.28928 1.27564 1.31119 0.83318 0.75151 0.75533 0.75521 1.22253 1.22358 1.21117 1.22454 0.99185 0.97859 0.99572 1.22480 0.90229 0.98173 0.89710 1.87805 1.19810 1.90028 1.33469 1.22438 0.84652 0.96410 0.97471 1.22369 0.99071 0.99825 0.97784 0.92139 0.91890 0.92409 0.88252 0.87936 0.76326 0.92803 0.91759 0.79889 0.93507 0.90314 0.92612 0.90230 0.91475 0.89943 0.92704 0.91086 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.19 37.16 0.38 -0.76 16 2 C -0.13 -1.57 5.92 -90.62 -0.54 -2.11 16 3 H 0.11 1.60 7.67 -51.93 -0.40 1.20 16 4 C -0.15 -1.89 9.88 -26.74 -0.26 -2.15 16 5 C -0.19 -2.61 5.91 -91.77 -0.54 -3.15 16 6 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 7 C 0.54 9.52 7.61 -10.99 -0.08 9.43 16 8 O -0.56 -11.65 16.26 5.55 0.09 -11.56 16 9 N -0.70 -12.13 5.12 -60.30 -0.31 -12.44 16 10 C 0.12 2.19 4.38 -4.04 -0.02 2.17 16 11 C 0.19 3.46 0.41 -131.63 -0.05 3.41 16 12 N -0.72 -15.36 3.59 -47.06 -0.17 -15.53 16 13 C -0.33 -8.11 8.67 -15.06 -0.13 -8.24 16 14 H 0.06 1.64 6.78 -52.49 -0.36 1.28 16 15 C -0.04 -1.00 5.50 -17.43 -0.10 -1.09 16 16 N -0.94 -26.87 13.70 55.49 0.76 -26.11 16 17 Si 1.07 24.96 29.92 -169.99 -5.09 19.87 16 18 H -0.30 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.30 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 21 C -0.15 -2.65 4.79 -26.49 -0.13 -2.77 16 22 C 0.07 1.24 6.68 37.31 0.25 1.49 16 23 O -0.39 -6.85 10.77 -35.23 -0.38 -7.23 16 24 C 0.07 1.05 6.67 37.21 0.25 1.30 16 25 C -0.15 -2.33 4.79 -26.59 -0.13 -2.45 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.49 7.90 -51.93 -0.41 0.08 16 29 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 30 H 0.10 1.12 8.05 -51.93 -0.42 0.70 16 31 H 0.40 6.71 7.43 -40.82 -0.30 6.41 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.35 7.49 -51.93 -0.39 0.96 16 34 H 0.37 8.13 5.69 -40.82 -0.23 7.90 16 35 H 0.25 7.06 6.79 -40.82 -0.28 6.79 16 36 H 0.08 1.49 7.17 -51.93 -0.37 1.12 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.37 7.75 -51.93 -0.40 0.97 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 0.94 7.16 -51.93 -0.37 0.57 16 42 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 0.97 7.38 -51.93 -0.38 0.58 16 LS Contribution 342.61 15.07 5.16 5.16 Total: -1.00 -29.92 342.61 -7.95 -37.87 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -6.91 Total: 14.88 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -1.10 Total: -4.92 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: 0.28 Total: -54.08 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.29 Total: -18.79 kcal Atomic # 14 Polarization: 24.96 SS G_CDS: -5.09 Total: 19.87 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.92 -7.95 -37.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754734671.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.279 kcal (2) G-P(sol) polarization free energy of solvation -29.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds