Wall clock time and date at job start Tue Mar 31 2020 06:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 115.54888 * 2 1 4 4 C 1.53079 * 117.53408 * 214.29005 * 2 1 3 5 5 C 1.52998 * 117.50185 * 145.67157 * 2 1 3 6 6 H 1.08991 * 117.50234 * 215.02887 * 5 2 1 7 7 C 1.50709 * 117.49673 * 0.02612 * 5 2 1 8 8 O 1.21284 * 119.99812 * 359.91099 * 7 5 2 9 9 N 1.34770 * 120.00035 * 179.91228 * 7 5 2 10 10 C 1.46501 * 120.00355 * 180.02562 * 9 7 5 11 11 C 1.52993 * 109.47283 * 177.08788 * 10 9 7 12 12 N 1.46505 * 109.61984 * 54.94026 * 11 10 9 13 13 C 1.36935 * 119.99775 * 58.95043 * 12 11 10 14 14 H 1.07997 * 120.00088 * 5.86324 * 13 12 11 15 15 C 1.38818 * 119.99557 * 185.85950 * 13 12 11 16 16 N 1.31614 * 120.00099 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99735 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47379 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46803 * 119.99901 * 17 15 13 20 20 H 1.48497 * 109.47618 * 240.00103 * 17 15 13 21 21 C 1.53175 * 109.54443 * 294.71712 * 11 10 9 22 22 C 1.53096 * 109.16391 * 183.15567 * 21 11 10 23 23 O 1.42900 * 109.41645 * 57.60745 * 22 21 11 24 24 C 1.42899 * 114.09713 * 298.84240 * 23 22 21 25 25 C 1.53096 * 109.41616 * 61.15991 * 24 23 22 26 26 H 1.08998 * 109.47281 * 274.32264 * 1 2 3 27 27 H 1.08990 * 109.47344 * 34.32862 * 1 2 3 28 28 H 1.09001 * 109.47166 * 154.32912 * 1 2 3 29 29 H 1.08993 * 117.49431 * 145.04710 * 4 2 1 30 30 H 1.08997 * 117.51138 * 0.02562 * 4 2 1 31 31 H 0.97006 * 119.99765 * 359.97438 * 9 7 5 32 32 H 1.08990 * 109.46930 * 57.08330 * 10 9 7 33 33 H 1.09006 * 109.46519 * 297.08818 * 10 9 7 34 34 H 0.97001 * 119.99753 * 238.95778 * 12 11 10 35 35 H 0.96999 * 119.99676 * 179.97438 * 16 15 13 36 36 H 1.09000 * 109.52567 * 63.24786 * 21 11 10 37 37 H 1.09006 * 109.57319 * 303.08734 * 21 11 10 38 38 H 1.09007 * 109.47956 * 177.59022 * 22 21 11 39 39 H 1.08994 * 109.47795 * 297.62272 * 22 21 11 40 40 H 1.09000 * 109.48008 * 301.17735 * 24 23 22 41 41 H 1.09003 * 109.48420 * 181.14140 * 24 23 22 42 42 H 1.09003 * 109.52279 * 182.48908 * 25 24 23 43 43 H 1.08995 * 109.52151 * 62.29669 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2377 -1.1215 -0.7647 5 6 2.2365 -1.1207 0.7653 6 1 3.1711 -0.8746 1.2692 7 6 1.3721 -2.1405 1.4610 8 8 0.1638 -2.0525 1.4023 9 7 1.9416 -3.1503 2.1483 10 6 1.1013 -4.1420 2.8241 11 6 1.9888 -5.2117 3.4635 12 7 2.9666 -4.5746 4.3493 13 6 2.5403 -3.8056 5.3990 14 1 1.4874 -3.7450 5.6315 15 6 3.4617 -3.1040 6.1644 16 7 4.7448 -3.1775 5.8808 17 14 2.8802 -2.0543 7.5960 18 1 1.4016 -2.1396 7.7039 19 1 3.4970 -2.5472 8.8537 20 1 3.2797 -0.6423 7.3690 21 6 2.7219 -5.9913 2.3676 22 6 3.5457 -7.1095 3.0117 23 8 2.6830 -7.9571 3.7729 24 6 2.0068 -7.2924 4.8419 25 6 1.1211 -6.1816 4.2714 26 1 -0.3634 0.0775 1.0247 27 1 -0.3633 0.8486 -0.5795 28 1 -0.3633 -0.9262 -0.4452 29 1 3.1729 -0.8754 -1.2674 30 1 1.6132 -1.8593 -1.2684 31 1 2.9080 -3.2208 2.1949 32 1 0.4352 -4.6086 2.0986 33 1 0.5100 -3.6509 3.5971 34 1 3.9158 -4.6976 4.1920 35 1 5.3885 -2.6869 6.4154 36 1 3.3842 -5.3185 1.8228 37 1 1.9958 -6.4241 1.6793 38 1 4.0359 -7.6945 2.2334 39 1 4.2991 -6.6740 3.6681 40 1 2.7400 -6.8592 5.5223 41 1 1.3882 -8.0090 5.3822 42 1 0.6385 -5.6448 5.0881 43 1 0.3620 -6.6183 3.6225 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754734672.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:44 Heat of formation + Delta-G solvation = -52.602200 kcal Electronic energy + Delta-G solvation = -23616.980653 eV Core-core repulsion = 20277.032441 eV Total energy + Delta-G solvation = -3339.948212 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.88690 -39.10257 -36.61126 -35.55838 -33.39619 -32.18809 -30.66830 -29.19754 -28.57655 -26.94951 -24.19920 -23.75682 -22.95675 -21.78911 -20.82383 -19.52073 -18.55247 -17.24623 -16.83751 -15.80528 -15.59261 -15.42410 -15.06808 -14.71446 -14.33455 -14.25034 -13.69435 -13.68766 -13.25107 -12.93013 -12.66273 -12.37381 -12.20615 -12.07594 -11.96865 -11.72818 -11.44485 -11.38836 -10.95109 -10.91981 -10.81741 -10.33099 -10.12249 -10.03876 -9.95087 -9.83540 -9.72715 -9.17177 -9.13141 -8.84490 -8.38502 -7.12387 -5.89500 -3.19706 2.92366 3.36043 3.44372 3.44425 3.68371 3.96813 4.35118 4.49341 4.75785 4.96653 5.00390 5.17855 5.25170 5.32401 5.43114 5.45480 5.53705 5.54043 5.62853 5.73193 5.74981 5.93002 5.96752 5.99833 6.07341 6.09490 6.11224 6.22150 6.24081 6.30031 6.37817 6.54152 6.55385 6.64730 6.71714 6.77267 7.09472 7.63052 7.68594 8.12528 8.27804 8.77277 9.40789 9.91003 10.27751 11.32290 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012240 B = 0.006660 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.037886 B = 4203.067131 C = 5667.187044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.122 4.122 3 H 0.107 0.893 4 C -0.154 4.154 5 C -0.188 4.188 6 H 0.122 0.878 7 C 0.538 3.462 8 O -0.554 6.554 9 N -0.696 5.696 10 C 0.121 3.879 11 C 0.189 3.811 12 N -0.712 5.712 13 C -0.234 4.234 14 H 0.070 0.930 15 C -0.006 4.006 16 N -0.930 5.930 17 Si 0.901 3.099 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.151 4.151 22 C 0.066 3.934 23 O -0.393 6.393 24 C 0.070 3.930 25 C -0.155 4.155 26 H 0.068 0.932 27 H 0.043 0.957 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.403 0.597 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.384 0.616 35 H 0.255 0.745 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 -1.239 -10.676 11.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.141 4.141 3 H 0.125 0.875 4 C -0.192 4.192 5 C -0.209 4.209 6 H 0.140 0.860 7 C 0.324 3.676 8 O -0.433 6.433 9 N -0.345 5.345 10 C -0.005 4.005 11 C 0.097 3.903 12 N -0.355 5.355 13 C -0.365 4.365 14 H 0.088 0.912 15 C -0.203 4.203 16 N -0.578 5.578 17 Si 0.733 3.267 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.189 4.189 22 C -0.011 4.011 23 O -0.312 6.312 24 C -0.006 4.006 25 C -0.195 4.195 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.239 0.761 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.219 0.781 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.783 -1.290 -10.599 11.328 hybrid contribution 0.687 0.981 1.071 1.607 sum -3.096 -0.309 -9.528 10.023 Atomic orbital electron populations 1.21326 0.91645 1.00962 1.02586 1.22332 0.96496 0.93467 1.01783 0.87511 1.23043 1.02761 1.01944 0.91442 1.22318 1.02307 1.01040 0.95267 0.86002 1.19526 0.87915 0.81318 0.78813 1.90643 1.14618 1.75156 1.62931 1.45710 1.11002 1.26727 1.51064 1.21734 0.93183 0.90104 0.95465 1.19836 0.90336 0.90382 0.89749 1.42489 1.03919 1.58015 1.31048 1.19106 0.92679 1.19742 1.05000 0.91170 1.24687 0.95350 1.00361 0.99865 1.69648 1.00048 1.46289 1.41779 0.86208 0.77824 0.80254 0.82447 1.20580 1.21916 1.21930 1.22349 1.00205 0.98079 0.98248 1.22466 0.92191 0.91772 0.94674 1.87799 1.60964 1.36508 1.45955 1.22447 0.95362 0.93906 0.88920 1.22491 0.98479 0.97599 1.00940 0.91335 0.93777 0.91848 0.88205 0.88496 0.76090 0.92999 0.91740 0.78068 0.93541 0.91186 0.91275 0.90018 0.92331 0.91472 0.90339 0.90554 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 8.43 37.16 0.31 -1.17 16 2 C -0.12 -1.55 6.41 -90.58 -0.58 -2.13 16 3 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 4 C -0.15 -1.79 9.89 -26.69 -0.26 -2.05 16 5 C -0.19 -2.68 6.19 -91.77 -0.57 -3.25 16 6 H 0.12 1.66 8.14 -51.93 -0.42 1.24 16 7 C 0.54 9.46 7.59 -10.98 -0.08 9.38 16 8 O -0.55 -11.06 13.10 5.55 0.07 -10.99 16 9 N -0.70 -12.16 5.14 -60.30 -0.31 -12.47 16 10 C 0.12 2.20 4.32 -4.04 -0.02 2.18 16 11 C 0.19 3.33 0.41 -131.64 -0.05 3.27 16 12 N -0.71 -15.13 3.67 -47.06 -0.17 -15.30 16 13 C -0.23 -5.79 8.70 -15.06 -0.13 -5.92 16 14 H 0.07 1.76 6.76 -52.49 -0.35 1.41 16 15 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 16 N -0.93 -25.76 13.07 55.49 0.73 -25.03 16 17 Si 0.90 21.62 29.55 -169.99 -5.02 16.60 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 C -0.15 -2.29 4.80 -26.59 -0.13 -2.41 16 22 C 0.07 1.02 6.67 37.21 0.25 1.27 16 23 O -0.39 -6.71 10.77 -35.23 -0.38 -7.09 16 24 C 0.07 1.19 6.68 37.21 0.25 1.44 16 25 C -0.15 -2.64 4.83 -26.59 -0.13 -2.76 16 26 H 0.07 1.08 7.26 -51.93 -0.38 0.71 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.94 7.02 -51.93 -0.36 0.57 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.10 1.15 8.05 -51.93 -0.42 0.73 16 31 H 0.40 6.94 7.41 -40.82 -0.30 6.64 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.06 1.34 7.53 -51.93 -0.39 0.95 16 34 H 0.38 8.78 6.71 -40.82 -0.27 8.50 16 35 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.07 1.01 7.36 -51.93 -0.38 0.63 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 1.00 7.07 -51.93 -0.37 0.63 16 40 H 0.07 1.30 7.75 -51.93 -0.40 0.90 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.08 1.39 7.15 -51.93 -0.37 1.02 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 338.68 15.07 5.10 5.10 Total: -1.00 -28.35 338.68 -8.17 -36.52 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -6.94 Total: 15.09 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -1.24 Total: -2.42 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.24 Total: -52.80 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.31 Total: -18.09 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.35 -8.17 -36.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754734672.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.085 kcal (2) G-P(sol) polarization free energy of solvation -28.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds