Wall clock time and date at job start Tue Mar 31 2020 06:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08991 * 115.56423 * 2 1 4 4 C 1.53002 * 117.49625 * 145.69259 * 2 1 3 5 5 C 1.53006 * 117.49435 * 214.31414 * 2 1 3 6 6 H 1.08998 * 117.50006 * 145.00329 * 5 2 1 7 7 C 1.50701 * 117.50133 * 359.97438 * 5 2 1 8 8 O 1.21279 * 119.99513 * 0.02562 * 7 5 2 9 9 N 1.34771 * 119.99997 * 180.02562 * 7 5 2 10 10 C 1.46506 * 120.00007 * 180.02562 * 9 7 5 11 11 C 1.52992 * 109.47121 * 176.60978 * 10 9 7 12 12 N 1.46504 * 109.54457 * 54.53021 * 11 10 9 13 13 C 1.36936 * 119.99612 * 62.04981 * 12 11 10 14 14 H 1.07997 * 120.00441 * 354.01996 * 13 12 11 15 15 C 1.38820 * 119.99587 * 174.02209 * 13 12 11 16 16 N 1.31614 * 120.00041 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99854 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46974 * 60.00118 * 17 15 13 19 19 H 1.48496 * 109.46964 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47186 * 300.00414 * 17 15 13 21 21 C 1.53183 * 109.54473 * 294.26542 * 11 10 9 22 22 C 1.53088 * 109.16307 * 183.15595 * 21 11 10 23 23 O 1.42907 * 109.41801 * 57.60656 * 22 21 11 24 24 C 1.42905 * 114.09536 * 298.83950 * 23 22 21 25 25 C 1.53089 * 109.41266 * 61.16011 * 24 23 22 26 26 H 1.09000 * 109.47692 * 205.68783 * 1 2 3 27 27 H 1.09004 * 109.47172 * 325.68835 * 1 2 3 28 28 H 1.09007 * 109.47617 * 85.68189 * 1 2 3 29 29 H 1.09002 * 117.49791 * 214.97495 * 4 2 1 30 30 H 1.09000 * 117.49680 * 359.97438 * 4 2 1 31 31 H 0.96996 * 120.00104 * 0.02562 * 9 7 5 32 32 H 1.09001 * 109.46673 * 296.61015 * 10 9 7 33 33 H 1.08996 * 109.46801 * 56.60716 * 10 9 7 34 34 H 0.96999 * 119.99915 * 242.04569 * 12 11 10 35 35 H 0.96997 * 120.00119 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.52123 * 303.05622 * 21 11 10 37 37 H 1.08992 * 109.52056 * 63.24778 * 21 11 10 38 38 H 1.09003 * 109.48255 * 297.62478 * 22 21 11 39 39 H 1.09003 * 109.48958 * 177.59754 * 22 21 11 40 40 H 1.09001 * 109.48200 * 301.18009 * 24 23 22 41 41 H 1.08997 * 109.48898 * 181.14371 * 24 23 22 42 42 H 1.09006 * 109.52305 * 182.48294 * 25 24 23 43 43 H 1.09004 * 109.52330 * 62.29676 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0003 0.9832 0.0000 4 6 2.2363 -1.1211 0.7650 5 6 2.2363 -1.1210 -0.7651 6 1 3.1712 -0.8752 -1.2687 7 6 1.3718 -2.1409 -1.4605 8 8 0.1637 -2.0535 -1.4008 9 7 1.9413 -3.1501 -2.1486 10 6 1.1009 -4.1413 -2.8251 11 6 1.9878 -5.1209 -3.5961 12 7 2.9776 -5.7052 -2.6877 13 6 2.5668 -6.4574 -1.6198 14 1 1.5147 -6.5404 -1.3905 15 6 3.5027 -7.1131 -0.8317 16 7 4.7849 -7.0123 -1.1113 17 14 2.9424 -8.1387 0.6256 18 1 2.0481 -9.2253 0.1515 19 1 4.1263 -8.7308 1.2986 20 1 2.2072 -7.2757 1.5848 21 6 2.7042 -4.3804 -4.7297 22 6 3.5271 -5.3826 -5.5434 23 8 2.6667 -6.4072 -6.0455 24 6 2.0062 -7.1643 -5.0293 25 6 1.1222 -6.2337 -4.1950 26 1 -0.3634 -0.9261 0.4454 27 1 -0.3634 0.8489 0.5793 28 1 -0.3634 0.0774 -1.0248 29 1 3.1715 -0.8753 1.2682 30 1 1.6110 -1.8583 1.2685 31 1 2.9076 -3.2203 -2.1960 32 1 0.5151 -4.6866 -2.0851 33 1 0.4296 -3.6355 -3.5190 34 1 3.9240 -5.5593 -2.8428 35 1 5.4388 -7.4708 -0.5609 36 1 1.9673 -3.9041 -5.3764 37 1 3.3652 -3.6227 -4.3092 38 1 4.2902 -5.8290 -4.9058 39 1 4.0053 -4.8685 -6.3772 40 1 2.7495 -7.6339 -4.3849 41 1 1.3886 -7.9337 -5.4926 42 1 0.6517 -6.8013 -3.3920 43 1 0.3533 -5.7948 -4.8309 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754734673.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:48 Heat of formation + Delta-G solvation = -52.397901 kcal Electronic energy + Delta-G solvation = -23616.668886 eV Core-core repulsion = 20276.729533 eV Total energy + Delta-G solvation = -3339.939353 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.89926 -39.08742 -36.61218 -35.55386 -33.42365 -32.17799 -30.63785 -29.19236 -28.58403 -26.95166 -24.20085 -23.74985 -22.93754 -21.76082 -20.80896 -19.55446 -18.54538 -17.24423 -16.85302 -15.78951 -15.58209 -15.45176 -15.01716 -14.66784 -14.32670 -14.26834 -13.82770 -13.66808 -13.14553 -12.93474 -12.62059 -12.36702 -12.28501 -12.09468 -11.93230 -11.71618 -11.44167 -11.36569 -10.92336 -10.90190 -10.78988 -10.39219 -10.11192 -10.03864 -9.95893 -9.75911 -9.70836 -9.22223 -9.16745 -8.78511 -8.42046 -7.11925 -5.88815 -3.19257 2.91187 3.37091 3.42404 3.43592 3.61207 4.01797 4.38725 4.49567 4.76106 4.98461 5.00150 5.16814 5.25353 5.34321 5.38249 5.44158 5.52064 5.56304 5.65315 5.78604 5.81345 5.90249 5.99387 6.01605 6.09170 6.11556 6.12806 6.20714 6.23374 6.32293 6.42048 6.54504 6.56945 6.64030 6.73297 6.79570 7.06313 7.62526 7.72505 8.08803 8.28503 8.73771 9.41053 9.91504 10.28361 11.32864 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012517 B = 0.006619 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.423910 B = 4228.969405 C = 5710.536676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.124 4.124 3 H 0.106 0.894 4 C -0.150 4.150 5 C -0.189 4.189 6 H 0.118 0.882 7 C 0.538 3.462 8 O -0.553 6.553 9 N -0.697 5.697 10 C 0.119 3.881 11 C 0.189 3.811 12 N -0.712 5.712 13 C -0.236 4.236 14 H 0.069 0.931 15 C -0.005 4.005 16 N -0.930 5.930 17 Si 0.902 3.098 18 H -0.286 1.286 19 H -0.292 1.292 20 H -0.287 1.287 21 C -0.150 4.150 22 C 0.066 3.934 23 O -0.394 6.394 24 C 0.070 3.930 25 C -0.152 4.152 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.066 0.934 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.403 0.597 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.384 0.616 35 H 0.256 0.744 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.877 9.798 -3.500 10.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.143 4.143 3 H 0.124 0.876 4 C -0.187 4.187 5 C -0.210 4.210 6 H 0.136 0.864 7 C 0.324 3.676 8 O -0.432 6.432 9 N -0.347 5.347 10 C -0.007 4.007 11 C 0.097 3.903 12 N -0.354 5.354 13 C -0.367 4.367 14 H 0.087 0.913 15 C -0.202 4.202 16 N -0.578 5.578 17 Si 0.733 3.267 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.213 1.213 21 C -0.188 4.188 22 C -0.011 4.011 23 O -0.313 6.313 24 C -0.006 4.006 25 C -0.192 4.192 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.119 0.881 30 H 0.118 0.882 31 H 0.238 0.762 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.219 0.781 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.816 9.675 -3.539 10.986 hybrid contribution 0.685 -0.648 1.162 1.496 sum -3.131 9.026 -2.377 9.845 Atomic orbital electron populations 1.21330 0.91672 1.01155 1.02378 1.22330 0.96473 0.93330 1.02123 0.87579 1.23045 1.02843 1.01536 0.91293 1.22267 1.01844 1.00967 0.95917 0.86370 1.19548 0.87956 0.81561 0.78568 1.90646 1.14613 1.75833 1.62151 1.45722 1.10968 1.26151 1.51825 1.21783 0.93254 0.89728 0.95942 1.19833 0.90307 0.91203 0.88982 1.42460 1.03909 1.60448 1.28578 1.19008 0.92447 1.21772 1.03473 0.91310 1.24688 0.95291 1.00547 0.99638 1.69627 0.99586 1.47456 1.41105 0.86358 0.77203 0.80375 0.82785 1.21254 1.21753 1.21326 1.22342 1.00232 0.98584 0.97687 1.22462 0.92298 0.88731 0.97609 1.87794 1.61618 1.48376 1.33479 1.22449 0.95666 0.92836 0.89695 1.22454 0.98350 0.98805 0.99638 0.91722 0.93773 0.91509 0.88092 0.88242 0.76182 0.91863 0.92879 0.78097 0.93410 0.91282 0.91303 0.92194 0.90109 0.91234 0.90413 0.90480 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 8.43 37.15 0.31 -1.14 16 2 C -0.12 -1.53 6.41 -90.62 -0.58 -2.11 16 3 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 4 C -0.15 -1.93 9.88 -26.73 -0.26 -2.20 16 5 C -0.19 -2.61 6.19 -91.76 -0.57 -3.18 16 6 H 0.12 1.39 8.14 -51.93 -0.42 0.97 16 7 C 0.54 9.25 7.59 -10.99 -0.08 9.16 16 8 O -0.55 -10.88 13.10 5.56 0.07 -10.81 16 9 N -0.70 -11.92 5.13 -60.30 -0.31 -12.23 16 10 C 0.12 2.14 4.36 -4.04 -0.02 2.12 16 11 C 0.19 3.33 0.41 -131.63 -0.05 3.28 16 12 N -0.71 -15.12 3.60 -47.06 -0.17 -15.29 16 13 C -0.24 -5.82 8.67 -15.06 -0.13 -5.95 16 14 H 0.07 1.72 6.78 -52.49 -0.36 1.36 16 15 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 16 N -0.93 -25.81 13.07 55.49 0.73 -25.08 16 17 Si 0.90 21.51 29.55 -169.99 -5.02 16.49 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 C -0.15 -2.29 4.80 -26.59 -0.13 -2.42 16 22 C 0.07 1.04 6.67 37.20 0.25 1.29 16 23 O -0.39 -6.89 10.77 -35.23 -0.38 -7.27 16 24 C 0.07 1.23 6.68 37.20 0.25 1.48 16 25 C -0.15 -2.64 4.78 -26.59 -0.13 -2.77 16 26 H 0.06 0.99 7.01 -51.93 -0.36 0.63 16 27 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.98 7.26 -51.93 -0.38 0.61 16 29 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.10 1.43 8.05 -51.93 -0.42 1.02 16 31 H 0.40 6.70 7.43 -40.82 -0.30 6.40 16 32 H 0.06 1.29 7.47 -51.93 -0.39 0.90 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.38 8.77 6.82 -40.82 -0.28 8.49 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.98 7.40 -51.93 -0.38 0.60 16 38 H 0.06 1.05 7.15 -51.93 -0.37 0.68 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.41 7.75 -51.93 -0.40 1.01 16 41 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.08 1.43 7.20 -51.93 -0.37 1.05 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 338.84 15.07 5.11 5.11 Total: -1.00 -28.34 338.84 -8.17 -36.51 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: -6.96 Total: 15.24 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -1.24 Total: -2.67 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: 0.25 Total: -52.60 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.31 Total: -18.07 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.34 -8.17 -36.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754734673.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.888 kcal (2) G-P(sol) polarization free energy of solvation -28.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds