Wall clock time and date at job start Tue Mar 31 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46781 * 2 1 4 4 O 1.42896 * 109.47505 * 120.00388 * 2 1 3 5 5 C 1.42900 * 114.00439 * 90.00025 * 4 2 1 6 6 C 1.50694 * 109.47436 * 180.02562 * 5 4 2 7 7 O 1.21287 * 119.99936 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00020 * 180.02562 * 6 5 4 9 9 C 1.46636 * 125.32937 * 179.97438 * 8 6 5 10 10 C 1.53688 * 108.01202 * 179.17995 * 9 8 6 11 11 H 1.09000 * 112.56205 * 105.91029 * 10 9 8 12 12 C 1.53727 * 109.34502 * 232.44709 * 10 9 8 13 13 N 1.46663 * 107.94540 * 93.74050 * 12 10 9 14 14 C 1.36936 * 125.34001 * 179.45296 * 13 12 10 15 15 H 1.08003 * 119.99647 * 0.02562 * 14 13 12 16 16 C 1.38813 * 120.00402 * 180.02562 * 14 13 12 17 17 N 1.31615 * 119.99723 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00115 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47431 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46972 * 120.00442 * 18 16 14 21 21 H 1.48507 * 109.47173 * 240.00428 * 18 16 14 22 22 C 1.46774 * 109.32430 * 359.46172 * 13 12 10 23 23 C 1.53961 * 106.62751 * 18.51144 * 22 13 12 24 24 H 1.09008 * 113.60834 * 94.61841 * 23 22 13 25 25 C 1.46742 * 125.32736 * 0.02562 * 8 6 5 26 26 H 1.09000 * 109.46795 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46835 * 299.99607 * 1 2 3 28 28 H 1.08995 * 109.46989 * 60.00126 * 1 2 3 29 29 H 1.09006 * 109.47150 * 240.00413 * 2 1 3 30 30 H 1.09005 * 109.46696 * 180.02562 * 3 2 1 31 31 H 1.08995 * 109.47234 * 300.00268 * 3 2 1 32 32 H 1.08998 * 109.47115 * 60.00564 * 3 2 1 33 33 H 1.09004 * 109.46978 * 59.99877 * 5 4 2 34 34 H 1.08999 * 109.46765 * 300.00661 * 5 4 2 35 35 H 1.09002 * 109.76382 * 59.54102 * 9 8 6 36 36 H 1.09001 * 109.76657 * 298.82217 * 9 8 6 37 37 H 1.09000 * 109.77562 * 213.37083 * 12 10 9 38 38 H 1.09009 * 109.76611 * 334.12319 * 12 10 9 39 39 H 0.97003 * 119.99806 * 179.97438 * 17 16 14 40 40 H 1.08999 * 110.02523 * 259.22075 * 22 13 12 41 41 H 1.09003 * 110.02832 * 137.80395 * 22 13 12 42 42 H 1.09005 * 110.00507 * 79.01588 * 25 8 6 43 43 H 1.08995 * 110.01348 * 317.64421 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2003 -2.0782 0.9885 6 6 2.7005 -2.6835 2.2747 7 8 2.8744 -1.9811 3.2481 8 7 2.9556 -4.0051 2.3431 9 6 3.4444 -4.7141 3.5299 10 6 3.5769 -6.2031 3.1731 11 1 4.6144 -6.5118 3.0453 12 6 2.8219 -7.0453 4.2142 13 7 1.4681 -7.2867 3.7044 14 6 0.4976 -8.0097 4.3452 15 1 0.7033 -8.4559 5.3071 16 6 -0.7503 -8.1692 3.7587 17 7 -1.0007 -7.6258 2.5864 18 14 -2.0743 -9.1549 4.6333 19 1 -1.5449 -9.6565 5.9268 20 1 -3.2529 -8.2871 4.8844 21 1 -2.4779 -10.3044 3.7841 22 6 1.3165 -6.6320 2.3996 23 6 2.7383 -6.3621 1.8743 24 1 3.1144 -7.1421 1.2120 25 6 2.7886 -4.9597 1.2412 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 2.9321 -2.2467 0.1984 34 1 1.2540 -2.5434 0.7123 35 1 2.7359 -4.5932 4.3494 36 1 4.4167 -4.3172 3.8220 37 1 3.3351 -7.9955 4.3622 38 1 2.7692 -6.5035 5.1586 39 1 -1.8727 -7.7375 2.1764 40 1 0.7762 -5.6922 2.5140 41 1 0.7829 -7.2885 1.7122 42 1 3.6334 -4.8896 0.5559 43 1 1.8589 -4.7569 0.7097 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754839976.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:24 Heat of formation + Delta-G solvation = -52.270175 kcal Electronic energy + Delta-G solvation = -23032.803597 eV Core-core repulsion = 19692.869782 eV Total energy + Delta-G solvation = -3339.933815 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.22443 -38.72285 -37.57100 -34.95680 -32.90105 -32.33675 -30.15774 -29.93931 -27.85768 -27.28093 -25.60073 -25.06842 -22.82125 -21.45534 -20.18639 -19.43454 -19.29170 -17.20797 -16.91357 -16.70852 -16.09558 -15.47643 -15.29478 -14.65704 -14.30433 -14.07435 -13.69274 -13.33247 -13.28389 -12.92826 -12.70979 -12.55289 -12.34431 -12.07823 -12.00090 -11.83429 -11.63040 -11.57212 -11.39840 -10.97524 -10.87234 -10.83314 -10.45529 -10.13556 -10.10466 -9.85085 -9.74799 -9.61635 -9.50486 -8.65986 -8.34789 -6.86586 -5.71847 -3.10180 2.78745 2.86427 3.38065 3.44096 3.46193 3.87821 4.46361 4.56796 4.75233 4.82427 4.86860 5.00457 5.05924 5.09817 5.16971 5.29860 5.42731 5.45262 5.48727 5.53470 5.62254 5.64908 5.67600 5.69799 5.74620 6.00303 6.05321 6.08378 6.17082 6.20568 6.30526 6.46656 6.52440 6.68355 6.83404 7.06504 7.46566 7.59859 7.73274 7.78338 8.28727 8.38409 9.19303 9.79872 10.42819 11.34851 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.019344 B = 0.004266 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.165350 B = 6562.256208 C = 7440.510543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.079 3.921 3 C -0.148 4.148 4 O -0.359 6.359 5 C 0.050 3.950 6 C 0.529 3.471 7 O -0.528 6.528 8 N -0.607 5.607 9 C 0.122 3.878 10 C -0.109 4.109 11 H 0.090 0.910 12 C 0.144 3.856 13 N -0.602 5.602 14 C -0.224 4.224 15 H 0.079 0.921 16 C -0.010 4.010 17 N -0.923 5.923 18 Si 0.914 3.086 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.290 1.290 22 C 0.171 3.829 23 C -0.122 4.122 24 H 0.096 0.904 25 C 0.108 3.892 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.251 0.749 40 H 0.019 0.981 41 H 0.094 0.906 42 H 0.061 0.939 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.996 10.200 -9.133 15.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.021 3.979 3 C -0.206 4.206 4 O -0.277 6.277 5 C -0.030 4.030 6 C 0.316 3.684 7 O -0.403 6.403 8 N -0.342 5.342 9 C 0.000 4.000 10 C -0.129 4.129 11 H 0.108 0.892 12 C 0.018 3.982 13 N -0.328 5.328 14 C -0.352 4.352 15 H 0.097 0.903 16 C -0.205 4.205 17 N -0.572 5.572 18 Si 0.745 3.255 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.217 1.217 22 C 0.046 3.954 23 C -0.142 4.142 24 H 0.114 0.886 25 C -0.015 4.015 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.062 0.938 40 H 0.037 0.963 41 H 0.111 0.889 42 H 0.079 0.921 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.884 10.715 -8.446 15.758 hybrid contribution -0.860 -0.691 0.127 1.110 sum 7.024 10.024 -8.319 14.800 Atomic orbital electron populations 1.22323 0.95777 1.02763 1.02643 1.22159 0.93907 0.93892 0.87944 1.21845 1.01791 0.94386 1.02530 1.88049 1.86544 1.17927 1.35182 1.22201 1.01316 0.83729 0.95733 1.19787 0.78220 0.80653 0.89722 1.90707 1.51881 1.59898 1.37861 1.48117 1.65664 1.06309 1.14126 1.21864 0.98971 0.90927 0.88204 1.22762 0.99317 0.93669 0.97127 0.89177 1.21146 0.86988 0.95781 0.94272 1.44247 1.08554 1.60793 1.19224 1.19122 0.90753 1.24121 1.01209 0.90328 1.24780 0.97628 1.00833 0.97280 1.69867 1.21935 1.48838 1.16512 0.86002 0.81723 0.79250 0.78552 1.20490 1.21759 1.21719 1.21476 0.88696 0.97068 0.88201 1.23316 1.00592 0.94598 0.95720 0.88620 1.22029 1.00958 0.89271 0.89263 0.92190 0.91568 0.91625 0.92110 0.91994 0.91247 0.91619 0.90522 0.90098 0.90871 0.92116 0.95638 0.95613 0.93815 0.96336 0.88862 0.92065 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 9.53 37.16 0.35 -1.41 16 2 C 0.08 0.83 3.34 -26.73 -0.09 0.74 16 3 C -0.15 -1.34 9.56 37.16 0.36 -0.98 16 4 O -0.36 -5.30 9.52 -55.14 -0.52 -5.82 16 5 C 0.05 0.68 5.26 36.00 0.19 0.87 16 6 C 0.53 9.30 7.91 -10.99 -0.09 9.22 16 7 O -0.53 -11.41 16.81 -14.36 -0.24 -11.65 16 8 N -0.61 -10.08 3.30 -172.37 -0.57 -10.65 16 9 C 0.12 2.10 6.22 -3.61 -0.02 2.07 16 10 C -0.11 -1.79 4.02 -88.60 -0.36 -2.15 16 11 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 12 C 0.14 2.92 6.62 -3.58 -0.02 2.89 16 13 N -0.60 -15.04 3.38 -171.84 -0.58 -15.62 16 14 C -0.22 -6.17 10.25 -15.06 -0.15 -6.32 16 15 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 16 C -0.01 -0.27 5.48 -17.43 -0.10 -0.36 16 17 N -0.92 -26.37 10.16 55.49 0.56 -25.81 16 18 Si 0.91 21.95 29.55 -169.99 -5.02 16.92 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 C 0.17 3.91 4.92 -3.39 -0.02 3.90 16 23 C -0.12 -2.06 4.17 -88.34 -0.37 -2.43 16 24 H 0.10 1.46 8.14 -51.92 -0.42 1.04 16 25 C 0.11 1.54 5.75 -3.41 -0.02 1.52 16 26 H 0.06 0.62 7.87 -51.93 -0.41 0.22 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.53 7.79 -51.93 -0.40 0.13 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 34 H 0.08 1.02 7.60 -51.93 -0.39 0.62 16 35 H 0.07 1.46 7.29 -51.93 -0.38 1.08 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.03 0.53 7.44 -51.92 -0.39 0.15 16 39 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.02 0.48 7.71 -51.93 -0.40 0.08 16 41 H 0.09 2.41 6.19 -51.93 -0.32 2.09 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.08 1.05 7.42 -51.93 -0.39 0.67 16 LS Contribution 342.03 15.07 5.15 5.15 Total: -1.00 -33.22 342.03 -8.83 -42.05 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -7.27 Total: -2.14 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -0.33 Total: 7.56 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.59 Total: -52.08 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.77 Total: -17.47 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.22 -8.83 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754839976.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.219 kcal (2) G-P(sol) polarization free energy of solvation -33.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds