Wall clock time and date at job start Tue Mar 31 2020 06:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 115.55209 * 2 1 4 4 C 1.53000 * 117.50000 * 214.28379 * 2 1 3 5 5 C 1.53003 * 117.49568 * 145.66111 * 2 1 3 6 6 H 1.08996 * 117.49831 * 215.00498 * 5 2 1 7 7 C 1.50698 * 117.49647 * 0.02562 * 5 2 1 8 8 O 1.21273 * 120.00476 * 359.97438 * 7 5 2 9 9 N 1.34782 * 119.99811 * 179.97438 * 7 5 2 10 10 C 1.46494 * 120.00075 * 174.69361 * 9 7 5 11 11 C 1.52999 * 109.54668 * 304.10152 * 10 9 7 12 12 N 1.46499 * 109.47042 * 305.58245 * 11 10 9 13 13 C 1.36932 * 119.99779 * 175.02080 * 12 11 10 14 14 H 1.08005 * 120.00446 * 0.02562 * 13 12 11 15 15 C 1.38816 * 119.99983 * 179.97438 * 13 12 11 16 16 N 1.31615 * 119.99812 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00430 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47179 * 89.99687 * 17 15 13 19 19 H 1.48503 * 109.47326 * 210.00289 * 17 15 13 20 20 H 1.48501 * 109.46829 * 330.00231 * 17 15 13 21 21 C 1.53181 * 109.54531 * 183.92177 * 10 9 7 22 22 C 1.53277 * 109.06577 * 297.03330 * 21 10 9 23 23 O 1.42908 * 109.45800 * 302.44380 * 22 21 10 24 24 C 1.42896 * 114.10096 * 61.15763 * 23 22 21 25 25 C 1.53092 * 109.41680 * 298.84523 * 24 23 22 26 26 H 1.08994 * 109.47646 * 274.33600 * 1 2 3 27 27 H 1.09008 * 109.46680 * 34.33620 * 1 2 3 28 28 H 1.09001 * 109.47138 * 154.33024 * 1 2 3 29 29 H 1.09001 * 117.49616 * 145.02690 * 4 2 1 30 30 H 1.08997 * 117.49834 * 0.02562 * 4 2 1 31 31 H 0.97002 * 120.00095 * 354.42382 * 9 7 5 32 32 H 1.09010 * 109.46760 * 65.58081 * 11 10 9 33 33 H 1.08998 * 109.47540 * 185.58080 * 11 10 9 34 34 H 0.96998 * 119.99734 * 355.02741 * 12 11 10 35 35 H 0.97004 * 120.00053 * 180.02562 * 16 15 13 36 36 H 1.09005 * 109.51959 * 57.02068 * 21 10 9 37 37 H 1.08998 * 109.52344 * 177.20861 * 21 10 9 38 38 H 1.08994 * 109.45982 * 182.44725 * 22 21 10 39 39 H 1.08999 * 109.46636 * 62.44229 * 22 21 10 40 40 H 1.08993 * 109.48563 * 178.85435 * 24 23 22 41 41 H 1.09006 * 109.49081 * 58.82964 * 24 23 22 42 42 H 1.09007 * 109.52053 * 297.70319 * 25 24 23 43 43 H 1.08997 * 109.57843 * 177.54656 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2364 -1.1213 -0.7645 5 6 2.2364 -1.1207 0.7656 6 1 3.1712 -0.8745 1.2691 7 6 1.3718 -2.1402 1.4614 8 8 0.1637 -2.0529 1.4017 9 7 1.9413 -3.1492 2.1500 10 6 1.1059 -4.0723 2.9220 11 6 0.2534 -3.2815 3.9164 12 7 1.1216 -2.4361 4.7396 13 6 0.5723 -1.5582 5.6355 14 1 -0.5008 -1.4892 5.7356 15 6 1.3950 -0.7574 6.4160 16 7 2.7028 -0.8417 6.2945 17 14 0.6459 0.4398 7.6387 18 1 0.4752 -0.2346 8.9507 19 1 1.5439 1.6118 7.7976 20 1 -0.6771 0.8938 7.1398 21 6 1.9987 -5.0576 3.6825 22 6 2.7895 -5.8981 2.6738 23 8 1.8813 -6.5739 1.8016 24 6 1.0533 -5.7006 1.0310 25 6 0.1927 -4.8535 1.9721 26 1 -0.3634 0.0777 1.0246 27 1 -0.3633 0.8487 -0.5797 28 1 -0.3633 -0.9262 -0.4452 29 1 3.1716 -0.8757 -1.2677 30 1 1.6112 -1.8588 -1.2677 31 1 2.9040 -3.2665 2.1313 32 1 -0.4531 -2.6552 3.3716 33 1 -0.2934 -3.9734 4.5570 34 1 2.0854 -2.4982 4.6500 35 1 3.2776 -0.2825 6.8401 36 1 2.6890 -4.5058 4.3206 37 1 1.3791 -5.7124 4.2953 38 1 3.3947 -6.6310 3.2071 39 1 3.4390 -5.2471 2.0886 40 1 0.4079 -6.2912 0.3810 41 1 1.6799 -5.0468 0.4242 42 1 -0.4633 -5.5042 2.5504 43 1 -0.4082 -4.1559 1.3887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755092989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:27 Heat of formation + Delta-G solvation = -45.677783 kcal Electronic energy + Delta-G solvation = -24076.558824 eV Core-core repulsion = 20736.910877 eV Total energy + Delta-G solvation = -3339.647947 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.53115 -38.85568 -36.66798 -35.29525 -33.61772 -31.65461 -31.02453 -30.37236 -28.26801 -26.54001 -24.24048 -23.69926 -23.20510 -21.45981 -21.07755 -19.78789 -18.94099 -17.22744 -16.88509 -16.11420 -15.89873 -15.41891 -15.19902 -14.66281 -14.28166 -14.12251 -13.93418 -13.46974 -13.08965 -12.89307 -12.64459 -12.40563 -12.36363 -12.25053 -12.07935 -11.70768 -11.48942 -11.32988 -11.16388 -10.89174 -10.80589 -10.47655 -10.28133 -10.07506 -10.04081 -9.87671 -9.67638 -9.45584 -9.03628 -8.72866 -8.48434 -6.84341 -5.73699 -2.99603 2.92639 3.45139 3.50528 3.51757 3.53198 3.96952 3.98981 4.61766 4.75133 4.84637 4.97678 4.98919 5.04744 5.11307 5.17771 5.29552 5.44146 5.47357 5.50874 5.62009 5.72448 5.76516 5.81382 5.95935 6.00052 6.01739 6.09335 6.13052 6.16750 6.27973 6.33222 6.35282 6.49946 6.58361 6.76108 6.92432 7.12071 7.27677 7.74927 7.96618 8.45891 8.73658 9.57491 10.15112 10.51105 11.49504 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.012652 B = 0.007120 C = 0.005182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.625928 B = 3931.783182 C = 5402.000400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.117 4.117 3 H 0.107 0.893 4 C -0.158 4.158 5 C -0.187 4.187 6 H 0.121 0.879 7 C 0.557 3.443 8 O -0.529 6.529 9 N -0.712 5.712 10 C 0.176 3.824 11 C 0.142 3.858 12 N -0.724 5.724 13 C -0.228 4.228 14 H 0.068 0.932 15 C -0.016 4.016 16 N -0.937 5.937 17 Si 0.905 3.095 18 H -0.291 1.291 19 H -0.292 1.292 20 H -0.283 1.283 21 C -0.155 4.155 22 C 0.061 3.939 23 O -0.386 6.386 24 C 0.067 3.933 25 C -0.163 4.163 26 H 0.073 0.927 27 H 0.043 0.957 28 H 0.061 0.939 29 H 0.098 0.902 30 H 0.096 0.904 31 H 0.394 0.606 32 H 0.050 0.950 33 H 0.018 0.982 34 H 0.381 0.619 35 H 0.253 0.747 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.046 0.954 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.432 -6.483 -14.098 15.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.135 4.135 3 H 0.125 0.875 4 C -0.196 4.196 5 C -0.208 4.208 6 H 0.139 0.861 7 C 0.344 3.656 8 O -0.405 6.405 9 N -0.363 5.363 10 C 0.090 3.910 11 C 0.014 3.986 12 N -0.368 5.368 13 C -0.360 4.360 14 H 0.086 0.914 15 C -0.211 4.211 16 N -0.586 5.586 17 Si 0.736 3.264 18 H -0.219 1.219 19 H -0.219 1.219 20 H -0.209 1.209 21 C -0.193 4.193 22 C -0.015 4.015 23 O -0.305 6.305 24 C -0.010 4.010 25 C -0.202 4.202 26 H 0.091 0.909 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.114 0.886 31 H 0.228 0.772 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.215 0.785 35 H 0.062 0.938 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.111 0.889 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.407 -6.518 -14.029 15.474 hybrid contribution 0.662 1.028 0.983 1.569 sum 1.069 -5.490 -13.046 14.194 Atomic orbital electron populations 1.21341 0.91512 1.00770 1.02986 1.22300 0.96633 0.93468 1.01146 0.87529 1.23044 1.02786 1.02292 0.91448 1.22309 1.02462 1.01236 0.94819 0.86117 1.19331 0.87956 0.80435 0.77892 1.90609 1.14468 1.74227 1.61239 1.45885 1.10067 1.30070 1.50249 1.20542 0.91044 0.88625 0.90833 1.21070 0.93379 0.93235 0.90892 1.42191 1.04979 1.45068 1.44558 1.19224 0.91727 1.12855 1.12175 0.91425 1.24666 0.95368 1.00486 1.00604 1.69642 1.01794 1.43456 1.43727 0.86210 0.77967 0.80780 0.81416 1.21858 1.21882 1.20859 1.22473 1.00293 0.98016 0.98532 1.22629 0.91274 0.96268 0.91377 1.87889 1.52393 1.33663 1.56574 1.22498 0.92806 0.92741 0.92960 1.22551 0.98966 0.99401 0.99247 0.90863 0.93846 0.91970 0.88370 0.88601 0.77235 0.93218 0.96405 0.78496 0.93754 0.89208 0.89627 0.88865 0.93539 0.89408 0.93487 0.90581 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 8.43 37.16 0.31 -1.28 16 2 C -0.12 -1.57 6.41 -90.62 -0.58 -2.15 16 3 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 4 C -0.16 -1.79 9.88 -26.73 -0.26 -2.05 16 5 C -0.19 -2.67 6.19 -91.77 -0.57 -3.24 16 6 H 0.12 1.66 8.14 -51.93 -0.42 1.24 16 7 C 0.56 9.36 7.00 -10.98 -0.08 9.28 16 8 O -0.53 -10.14 9.41 5.56 0.05 -10.09 16 9 N -0.71 -11.00 3.76 -47.44 -0.18 -11.18 16 10 C 0.18 2.86 0.32 -131.64 -0.04 2.82 16 11 C 0.14 3.01 4.79 -4.04 -0.02 2.99 16 12 N -0.72 -18.18 5.21 -59.91 -0.31 -18.49 16 13 C -0.23 -6.51 9.99 -15.06 -0.15 -6.66 16 14 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 15 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 16 N -0.94 -28.03 13.06 55.49 0.72 -27.30 16 17 Si 0.90 22.89 29.55 -169.99 -5.02 17.87 16 18 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 19 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 20 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 21 C -0.16 -2.30 4.84 -26.49 -0.13 -2.43 16 22 C 0.06 0.76 6.67 37.30 0.25 1.01 16 23 O -0.39 -5.29 10.77 -35.23 -0.38 -5.67 16 24 C 0.07 0.85 6.68 37.20 0.25 1.10 16 25 C -0.16 -2.38 4.82 -26.59 -0.13 -2.51 16 26 H 0.07 1.29 7.26 -51.93 -0.38 0.92 16 27 H 0.04 0.54 8.14 -51.92 -0.42 0.12 16 28 H 0.06 0.93 7.01 -51.93 -0.36 0.57 16 29 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.10 1.08 8.05 -51.93 -0.42 0.67 16 31 H 0.39 5.33 7.40 -40.82 -0.30 5.03 16 32 H 0.05 1.17 6.25 -51.92 -0.32 0.84 16 33 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.38 9.79 6.51 -40.82 -0.27 9.53 16 35 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.09 1.47 7.22 -51.93 -0.37 1.09 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 38 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.52 7.01 -51.93 -0.36 0.16 16 40 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.59 7.75 -51.93 -0.40 0.18 16 42 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.09 1.50 6.26 -51.93 -0.32 1.18 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -31.86 334.73 -8.18 -40.04 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -6.87 Total: 13.46 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: -1.24 Total: -3.67 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.23 Total: -56.98 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.33 Total: -15.76 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.86 -8.18 -40.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755092989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.638 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds