Wall clock time and date at job start Tue Mar 31 2020 05:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21286 * 120.00272 * 2 1 4 4 N 1.34778 * 119.99779 * 179.97438 * 2 1 3 5 5 C 1.46498 * 120.00090 * 179.97438 * 4 2 1 6 6 H 1.08993 * 109.47568 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.47485 * 300.00406 * 5 4 2 8 8 O 1.21278 * 119.99744 * 19.99643 * 7 5 4 9 9 N 1.34768 * 120.00177 * 199.99776 * 7 5 4 10 10 C 1.46500 * 120.00056 * 179.97438 * 9 7 5 11 11 H 1.08998 * 109.46845 * 35.00845 * 10 9 7 12 12 C 1.52997 * 109.47473 * 275.00296 * 10 9 7 13 13 C 1.50706 * 109.47187 * 154.99900 * 10 9 7 14 14 H 1.07998 * 119.99629 * 0.02562 * 13 10 9 15 15 C 1.37875 * 119.99955 * 179.97438 * 13 10 9 16 16 N 1.31510 * 120.00308 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99908 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.46848 * 60.00326 * 17 15 13 19 19 H 1.48500 * 109.47035 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47237 * 300.00475 * 17 15 13 21 21 C 1.53006 * 109.47107 * 60.00252 * 5 4 2 22 22 C 1.54260 * 110.03300 * 177.16685 * 21 5 4 23 23 C 1.54887 * 104.19702 * 217.10166 * 22 21 5 24 24 C 1.54895 * 102.74510 * 37.94391 * 23 22 21 25 25 C 1.53872 * 110.02942 * 59.99707 * 21 5 4 26 26 H 1.09000 * 109.47318 * 240.00611 * 1 2 3 27 27 H 1.09002 * 109.47110 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47609 * 119.99699 * 1 2 3 29 29 H 0.97001 * 120.00300 * 0.02562 * 4 2 1 30 30 H 0.97001 * 120.00396 * 359.97438 * 9 7 5 31 31 H 1.09002 * 109.47153 * 59.99757 * 12 10 9 32 32 H 1.09001 * 109.46832 * 299.99948 * 12 10 9 33 33 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 34 34 H 0.96998 * 120.00365 * 179.97438 * 16 15 13 35 35 H 1.09003 * 110.01345 * 298.60868 * 21 5 4 36 36 H 1.08992 * 110.48974 * 335.78356 * 22 21 5 37 37 H 1.09002 * 110.48776 * 98.42880 * 22 21 5 38 38 H 1.08995 * 110.75912 * 279.63362 * 23 22 21 39 39 H 1.08996 * 110.91763 * 156.32862 * 23 22 21 40 40 H 1.09004 * 110.48456 * 203.37882 * 24 23 22 41 41 H 1.09002 * 110.59847 * 80.79066 * 24 23 22 42 42 H 1.09001 * 110.03357 * 238.56903 * 25 21 5 43 43 H 1.08993 * 110.03830 * 0.02562 * 25 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0000 6 1 4.0091 -2.1949 0.0000 7 6 4.1478 -0.4577 -1.2311 8 8 3.4192 0.3034 -1.8318 9 7 5.4063 -0.6688 -1.6646 10 6 5.8940 0.0206 -2.8617 11 1 5.4594 1.0191 -2.9083 12 6 5.4889 -0.7708 -4.1068 13 6 7.3960 0.1290 -2.8020 14 1 7.9334 -0.2756 -1.9572 15 6 8.0840 0.7438 -3.8266 16 7 7.4297 1.2360 -4.8556 17 14 9.9458 0.8775 -3.7530 18 1 10.5376 -0.4831 -3.6891 19 1 10.4402 1.5764 -4.9663 20 1 10.3396 1.6457 -2.5446 21 6 4.1563 -0.4453 1.2486 22 6 5.6972 -0.4995 1.2975 23 6 6.0237 -0.6717 2.8017 24 6 4.9024 -1.6232 3.2881 25 6 3.6509 -1.1598 2.5142 26 1 -0.3634 -0.5137 0.8900 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3634 -0.5138 -0.8900 29 1 1.6958 -2.0073 0.0005 30 1 5.9891 -1.2773 -1.1840 31 1 4.4025 -0.8491 -4.1500 32 1 5.9236 -1.7692 -4.0601 33 1 5.8514 -0.2575 -4.9975 34 1 7.9137 1.6688 -5.5762 35 1 3.8184 0.5910 1.2447 36 1 6.0673 -1.3512 0.7268 37 1 6.1239 0.4292 0.9185 38 1 5.9703 0.2853 3.3206 39 1 7.0039 -1.1288 2.9373 40 1 4.7490 -1.5145 4.3618 41 1 5.1427 -2.6572 3.0406 42 1 3.0685 -0.4700 3.1250 43 1 3.0423 -2.0211 2.2390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318424.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:32 Heat of formation + Delta-G solvation = -89.904537 kcal Electronic energy + Delta-G solvation = -23687.845878 eV Core-core repulsion = 20346.280115 eV Total energy + Delta-G solvation = -3341.565763 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.32593 -38.10132 -37.53460 -34.75992 -34.00936 -32.32104 -30.90028 -29.21376 -28.42584 -28.26729 -25.29801 -25.00582 -21.47207 -20.75587 -20.53667 -19.40081 -19.06866 -17.42757 -16.85756 -15.97964 -15.64222 -15.43378 -15.00382 -14.75401 -14.46620 -13.88381 -13.67483 -13.29367 -13.28538 -12.94158 -12.58448 -12.34134 -12.08747 -12.04437 -11.56319 -11.15254 -11.12730 -11.06408 -10.96351 -10.91729 -10.84443 -10.65576 -10.56124 -10.49418 -10.25238 -10.18049 -9.48185 -9.23136 -8.98480 -8.50363 -8.33174 -7.75546 -6.06269 -4.15281 3.01976 3.28713 3.33900 3.34277 3.35062 3.59475 4.21818 4.43414 4.67980 4.70079 4.80799 5.05503 5.20619 5.25727 5.33533 5.36749 5.44759 5.49473 5.58496 5.65180 5.73301 5.77676 5.88077 5.91438 5.95744 6.04639 6.17013 6.33278 6.42009 6.57432 6.67734 6.88425 7.01670 7.22281 7.56866 7.64821 7.74589 7.76904 7.99502 8.21946 8.63058 8.77920 8.87533 9.28360 9.52777 10.99698 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.005543 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.084291 B = 5049.755111 C = 6253.805490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.512 3.488 3 O -0.508 6.508 4 N -0.723 5.723 5 C 0.138 3.862 6 H 0.098 0.902 7 C 0.491 3.509 8 O -0.526 6.526 9 N -0.711 5.711 10 C 0.267 3.733 11 H 0.047 0.953 12 C -0.145 4.145 13 C -0.531 4.531 14 H 0.060 0.940 15 C 0.066 3.934 16 N -0.884 5.884 17 Si 0.900 3.100 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.100 4.100 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.111 4.111 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.083 0.917 29 H 0.398 0.602 30 H 0.385 0.615 31 H 0.012 0.988 32 H 0.025 0.975 33 H 0.089 0.911 34 H 0.264 0.736 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.007 -9.358 14.410 19.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.298 3.702 3 O -0.381 6.381 4 N -0.376 5.376 5 C 0.029 3.971 6 H 0.116 0.884 7 C 0.273 3.727 8 O -0.402 6.402 9 N -0.361 5.361 10 C 0.165 3.835 11 H 0.065 0.935 12 C -0.204 4.204 13 C -0.569 4.569 14 H 0.078 0.922 15 C -0.137 4.137 16 N -0.522 5.522 17 Si 0.728 3.272 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.120 4.120 22 C -0.158 4.158 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.149 4.149 26 H 0.099 0.901 27 H 0.107 0.893 28 H 0.102 0.898 29 H 0.231 0.769 30 H 0.218 0.782 31 H 0.031 0.969 32 H 0.044 0.956 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.078 -7.884 13.748 18.264 hybrid contribution 1.060 -0.736 0.066 1.292 sum -8.018 -8.619 13.814 18.150 Atomic orbital electron populations 1.21877 0.92560 1.05107 1.03478 1.20540 0.90016 0.83766 0.75857 1.90741 1.70114 1.31097 1.46136 1.45640 1.05646 1.08769 1.77585 1.21053 0.81242 1.00155 0.94683 0.88389 1.20563 0.83224 0.83274 0.85598 1.90693 1.55989 1.35968 1.57568 1.46573 1.12238 1.46721 1.30545 1.18671 0.93393 0.92143 0.79312 0.93547 1.22064 0.96424 0.99055 1.02827 1.21177 0.90879 1.38885 1.05964 0.92203 1.24884 0.98708 0.94999 0.95130 1.69895 1.35610 1.37636 1.09033 0.86532 0.84954 0.78220 0.77507 1.20215 1.21191 1.20189 1.22091 0.95742 1.01934 0.92235 1.22459 0.94229 1.02858 0.96208 1.22472 0.98190 0.99397 0.95997 1.22377 0.95326 0.99270 0.99228 1.22120 0.97389 0.99620 0.95791 0.90105 0.89333 0.89825 0.76859 0.78231 0.96906 0.95626 0.89276 0.92605 0.88439 0.91427 0.90557 0.91661 0.91547 0.92125 0.91748 0.92186 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 10.32 36.00 0.37 -1.39 16 2 C 0.51 7.88 6.71 -10.99 -0.07 7.81 16 3 O -0.51 -10.61 13.00 -17.93 -0.23 -10.85 16 4 N -0.72 -9.34 4.56 -54.93 -0.25 -9.59 16 5 C 0.14 2.03 2.27 -69.08 -0.16 1.88 16 6 H 0.10 1.15 8.12 -51.93 -0.42 0.73 16 7 C 0.49 10.17 6.48 -10.99 -0.07 10.10 16 8 O -0.53 -13.42 13.35 -17.92 -0.24 -13.66 16 9 N -0.71 -15.09 4.56 -54.93 -0.25 -15.34 16 10 C 0.27 6.99 2.56 -69.08 -0.18 6.81 16 11 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 12 C -0.14 -3.71 9.26 37.16 0.34 -3.36 16 13 C -0.53 -14.29 8.73 -34.44 -0.30 -14.59 16 14 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 15 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 16 N -0.88 -25.51 11.32 55.43 0.63 -24.88 16 17 Si 0.90 20.98 29.54 -169.99 -5.02 15.95 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.10 -1.42 2.24 -89.50 -0.20 -1.62 16 22 C -0.12 -1.64 5.22 -25.08 -0.13 -1.78 16 23 C -0.12 -1.37 6.91 -24.74 -0.17 -1.55 16 24 C -0.12 -1.20 6.83 -25.07 -0.17 -1.37 16 25 C -0.11 -1.21 6.19 -25.61 -0.16 -1.37 16 26 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.09 0.96 8.12 -51.93 -0.42 0.54 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.40 3.51 8.83 -40.82 -0.36 3.15 16 30 H 0.38 7.05 6.71 -40.82 -0.27 6.78 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.10 1.75 6.25 -51.93 -0.32 1.43 16 36 H 0.07 0.88 6.27 -51.93 -0.33 0.55 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.58 7.37 -51.93 -0.38 0.20 16 LS Contribution 339.44 15.07 5.12 5.12 Total: -1.00 -34.83 339.44 -8.23 -43.06 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -6.99 Total: 8.91 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -0.99 Total: 1.29 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.13 Total: -49.82 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.47 Total: -24.50 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.83 -8.23 -43.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318424.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.848 kcal (2) G-P(sol) polarization free energy of solvation -34.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds