Wall clock time and date at job start Tue Mar 31 2020 05:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21286 * 120.00272 * 2 1 4 4 N 1.34778 * 119.99779 * 179.97438 * 2 1 3 5 5 C 1.46498 * 120.00090 * 179.97438 * 4 2 1 6 6 H 1.08993 * 109.47568 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.47485 * 300.00406 * 5 4 2 8 8 O 1.21278 * 119.99744 * 19.99643 * 7 5 4 9 9 N 1.34768 * 120.00177 * 199.99776 * 7 5 4 10 10 C 1.46500 * 120.00056 * 179.97438 * 9 7 5 11 11 H 1.08998 * 109.46845 * 35.00845 * 10 9 7 12 12 C 1.52997 * 109.47473 * 275.00296 * 10 9 7 13 13 C 1.50706 * 109.47187 * 154.99900 * 10 9 7 14 14 H 1.07998 * 119.99629 * 0.02562 * 13 10 9 15 15 C 1.37875 * 119.99955 * 179.97438 * 13 10 9 16 16 N 1.31510 * 120.00308 * 0.02562 * 15 13 10 17 17 Si 1.86800 * 119.99908 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.46848 * 60.00326 * 17 15 13 19 19 H 1.48500 * 109.47035 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47237 * 300.00475 * 17 15 13 21 21 C 1.53006 * 109.47107 * 60.00252 * 5 4 2 22 22 C 1.54260 * 110.03300 * 177.16685 * 21 5 4 23 23 C 1.54887 * 104.19702 * 217.10166 * 22 21 5 24 24 C 1.54895 * 102.74510 * 37.94391 * 23 22 21 25 25 C 1.53872 * 110.02942 * 59.99707 * 21 5 4 26 26 H 1.09000 * 109.47318 * 240.00611 * 1 2 3 27 27 H 1.09002 * 109.47110 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47609 * 119.99699 * 1 2 3 29 29 H 0.97001 * 120.00300 * 0.02562 * 4 2 1 30 30 H 0.97001 * 120.00396 * 359.97438 * 9 7 5 31 31 H 1.09002 * 109.47153 * 59.99757 * 12 10 9 32 32 H 1.09001 * 109.46832 * 299.99948 * 12 10 9 33 33 H 1.09004 * 109.47261 * 179.97438 * 12 10 9 34 34 H 0.96998 * 120.00365 * 179.97438 * 16 15 13 35 35 H 1.09003 * 110.01345 * 298.60868 * 21 5 4 36 36 H 1.08992 * 110.48974 * 335.78356 * 22 21 5 37 37 H 1.09002 * 110.48776 * 98.42880 * 22 21 5 38 38 H 1.08995 * 110.75912 * 279.63362 * 23 22 21 39 39 H 1.08996 * 110.91763 * 156.32862 * 23 22 21 40 40 H 1.09004 * 110.48456 * 203.37882 * 24 23 22 41 41 H 1.09002 * 110.59847 * 80.79066 * 24 23 22 42 42 H 1.09001 * 110.03357 * 238.56903 * 25 21 5 43 43 H 1.08993 * 110.03830 * 0.02562 * 25 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6458 -1.1673 0.0000 6 1 4.0091 -2.1949 0.0000 7 6 4.1478 -0.4577 -1.2311 8 8 3.4192 0.3034 -1.8318 9 7 5.4063 -0.6688 -1.6646 10 6 5.8940 0.0206 -2.8617 11 1 5.4594 1.0191 -2.9083 12 6 5.4889 -0.7708 -4.1068 13 6 7.3960 0.1290 -2.8020 14 1 7.9334 -0.2756 -1.9572 15 6 8.0840 0.7438 -3.8266 16 7 7.4297 1.2360 -4.8556 17 14 9.9458 0.8775 -3.7530 18 1 10.5376 -0.4831 -3.6891 19 1 10.4402 1.5764 -4.9663 20 1 10.3396 1.6457 -2.5446 21 6 4.1563 -0.4453 1.2486 22 6 5.6972 -0.4995 1.2975 23 6 6.0237 -0.6717 2.8017 24 6 4.9024 -1.6232 3.2881 25 6 3.6509 -1.1598 2.5142 26 1 -0.3634 -0.5137 0.8900 27 1 -0.3633 1.0277 -0.0005 28 1 -0.3634 -0.5138 -0.8900 29 1 1.6958 -2.0073 0.0005 30 1 5.9891 -1.2773 -1.1840 31 1 4.4025 -0.8491 -4.1500 32 1 5.9236 -1.7692 -4.0601 33 1 5.8514 -0.2575 -4.9975 34 1 7.9137 1.6688 -5.5762 35 1 3.8184 0.5910 1.2447 36 1 6.0673 -1.3512 0.7268 37 1 6.1239 0.4292 0.9185 38 1 5.9703 0.2853 3.3206 39 1 7.0039 -1.1288 2.9373 40 1 4.7490 -1.5145 4.3618 41 1 5.1427 -2.6572 3.0406 42 1 3.0685 -0.4700 3.1250 43 1 3.0423 -2.0211 2.2390 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064318424.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:32 Heat of formation + Delta-G solvation = -114.579533 kcal Electronic energy + Delta-G solvation = -23688.915866 eV Core-core repulsion = 20346.280115 eV Total energy + Delta-G solvation = -3342.635751 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.66653 -39.60232 -38.71788 -36.67487 -35.32372 -34.29978 -32.13839 -30.77966 -29.52030 -29.36315 -27.36421 -26.34674 -23.19307 -22.04609 -21.51116 -21.07330 -20.34706 -18.92879 -18.30643 -17.40422 -17.23356 -16.77464 -16.44699 -16.26935 -15.72205 -15.50207 -15.07110 -14.59089 -14.53385 -14.34377 -14.14228 -13.80059 -13.49420 -13.12015 -13.01129 -12.94053 -12.83724 -12.72295 -12.29965 -12.19881 -12.17097 -12.04576 -11.91404 -11.87721 -11.63162 -11.36767 -11.12255 -10.93059 -10.59673 -10.50153 -9.83165 -9.63710 -8.17240 -6.35248 1.43037 1.46193 1.53699 1.78459 1.94116 2.29334 2.41543 2.76172 3.12839 3.68573 3.70102 3.74615 4.11513 4.12269 4.16283 4.37249 4.55718 4.57363 4.68066 4.70179 4.72221 4.74432 4.88641 4.90228 4.91271 5.07115 5.08757 5.09996 5.14660 5.28738 5.35492 5.42376 5.48921 5.52270 5.56371 5.63214 5.69969 5.93779 6.10622 6.73139 6.73538 7.02465 7.33028 7.53544 7.67631 8.89002 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017332 B = 0.005543 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.084291 B = 5049.755111 C = 6253.805490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.499 3.501 3 O -0.574 6.574 4 N -0.708 5.708 5 C 0.147 3.853 6 H 0.144 0.856 7 C 0.482 3.518 8 O -0.579 6.579 9 N -0.704 5.704 10 C 0.274 3.726 11 H -0.016 1.016 12 C -0.129 4.129 13 C -0.543 4.543 14 H 0.074 0.926 15 C 0.012 3.988 16 N -0.920 5.920 17 Si 0.973 3.027 18 H -0.259 1.259 19 H -0.287 1.287 20 H -0.273 1.273 21 C -0.096 4.096 22 C -0.123 4.123 23 C -0.121 4.121 24 C -0.115 4.115 25 C -0.102 4.102 26 H 0.122 0.878 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.422 0.578 30 H 0.402 0.598 31 H 0.007 0.993 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.265 0.735 35 H 0.050 0.950 36 H 0.080 0.920 37 H 0.035 0.965 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.717 -12.690 16.633 22.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.288 3.712 3 O -0.452 6.452 4 N -0.362 5.362 5 C 0.038 3.962 6 H 0.161 0.839 7 C 0.267 3.733 8 O -0.459 6.459 9 N -0.355 5.355 10 C 0.170 3.830 11 H 0.002 0.998 12 C -0.188 4.188 13 C -0.582 4.582 14 H 0.092 0.908 15 C -0.188 4.188 16 N -0.559 5.559 17 Si 0.798 3.202 18 H -0.184 1.184 19 H -0.212 1.212 20 H -0.198 1.198 21 C -0.116 4.116 22 C -0.161 4.161 23 C -0.158 4.158 24 C -0.153 4.153 25 C -0.140 4.140 26 H 0.140 0.860 27 H 0.096 0.904 28 H 0.119 0.881 29 H 0.261 0.739 30 H 0.238 0.762 31 H 0.026 0.974 32 H 0.063 0.937 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.809 -11.303 16.014 21.490 hybrid contribution 0.917 0.368 -0.647 1.181 sum -7.892 -10.936 15.367 20.445 Atomic orbital electron populations 1.21871 0.88481 1.05397 1.06219 1.21540 0.92117 0.83292 0.74272 1.90731 1.71798 1.33536 1.49102 1.45551 1.04912 1.09511 1.76272 1.21063 0.82430 1.01440 0.91309 0.83879 1.21731 0.82266 0.82565 0.86696 1.90670 1.57317 1.38266 1.59603 1.46316 1.13105 1.46631 1.29449 1.18235 0.93256 0.89862 0.81640 0.99830 1.21854 0.95988 0.99458 1.01480 1.21504 0.91168 1.39036 1.06445 0.90791 1.25846 1.03896 0.94410 0.94633 1.70065 1.37640 1.38355 1.09817 0.85382 0.78625 0.78899 0.77332 1.18362 1.21244 1.19788 1.21995 0.96009 0.99828 0.93790 1.22457 0.93918 1.01239 0.98490 1.22469 0.99850 0.99850 0.93654 1.22365 0.93363 0.99641 0.99891 1.22070 0.98297 0.99920 0.93714 0.85999 0.90413 0.88104 0.73947 0.76236 0.97357 0.93683 0.91769 0.92641 0.93107 0.90151 0.94646 0.92555 0.90114 0.90535 0.89667 0.92676 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 10.32 71.23 0.74 -2.28 16 2 C 0.50 15.25 6.71 87.66 0.59 15.84 16 3 O -0.57 -25.33 13.00 19.41 0.25 -25.07 16 4 N -0.71 -16.93 4.56 -446.09 -2.03 -18.96 16 5 C 0.15 4.13 2.27 44.25 0.10 4.23 16 6 H 0.14 2.77 8.12 -2.39 -0.02 2.75 16 7 C 0.48 20.47 6.48 87.66 0.57 21.04 16 8 O -0.58 -31.19 13.35 19.43 0.26 -30.93 16 9 N -0.70 -30.46 4.56 -446.10 -2.03 -32.49 16 10 C 0.27 14.96 2.56 44.25 0.11 15.08 16 11 H -0.02 -1.08 7.58 -2.39 -0.02 -1.10 16 12 C -0.13 -6.79 9.26 71.98 0.67 -6.13 16 13 C -0.54 -29.71 8.73 25.60 0.22 -29.49 16 14 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 15 C 0.01 0.66 5.30 84.65 0.45 1.10 16 16 N -0.92 -54.84 11.32 21.45 0.24 -54.60 16 17 Si 0.97 43.06 29.54 68.60 2.03 45.09 16 18 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 19 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 21 C -0.10 -2.68 2.24 -10.07 -0.02 -2.70 16 22 C -0.12 -3.33 5.22 31.67 0.17 -3.16 16 23 C -0.12 -2.46 6.91 31.89 0.22 -2.24 16 24 C -0.12 -1.77 6.83 31.67 0.22 -1.55 16 25 C -0.10 -1.91 6.19 31.32 0.19 -1.72 16 26 H 0.12 1.28 8.14 -2.39 -0.02 1.27 16 27 H 0.08 1.65 8.12 -2.39 -0.02 1.63 16 28 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.42 5.85 8.83 -92.71 -0.82 5.03 16 30 H 0.40 14.42 6.71 -92.71 -0.62 13.80 16 31 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.06 3.70 6.07 -2.38 -0.01 3.69 16 34 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.05 1.93 6.25 -2.39 -0.01 1.92 16 36 H 0.08 1.93 6.27 -2.39 -0.02 1.91 16 37 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.09 1.21 7.37 -2.39 -0.02 1.20 16 Total: -1.00 -83.58 339.44 2.50 -81.08 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: -0.43 Total: 27.86 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 4.22 Total: 8.02 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -3.82 Total: -106.05 kcal Atomic # 8 Polarization: -56.51 SS G_CDS: 0.51 Total: -56.00 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -83.58 2.50 -81.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318424.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.499 kcal (2) G-P(sol) polarization free energy of solvation -83.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds