Wall clock time and date at job start Tue Mar 31 2020 05:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 5 5 C 1.50704 * 109.47083 * 185.00194 * 4 2 1 6 6 O 1.21290 * 120.00110 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99973 * 180.02562 * 5 4 2 8 8 C 1.37099 * 120.00239 * 180.02562 * 7 5 4 9 9 H 1.08007 * 119.99458 * 359.97438 * 8 7 5 10 10 C 1.38943 * 120.00262 * 180.02562 * 8 7 5 11 11 N 1.31412 * 120.00174 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00113 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.46829 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47048 * 119.99666 * 12 10 8 15 15 H 1.48495 * 109.47006 * 239.99461 * 12 10 8 16 16 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 17 17 C 1.34777 * 119.99665 * 85.27876 * 16 2 1 18 18 O 1.21283 * 119.99990 * 359.71991 * 17 16 2 19 19 C 1.50698 * 119.99538 * 179.72653 * 17 16 2 20 20 C 1.53001 * 109.47207 * 299.99218 * 19 17 16 21 21 C 1.52998 * 109.47157 * 180.02562 * 20 19 17 22 22 C 1.52999 * 109.47306 * 60.00300 * 21 20 19 23 23 C 1.52993 * 109.46873 * 300.00136 * 22 21 20 24 24 C 1.52998 * 109.47592 * 59.99643 * 23 22 21 25 25 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 27 27 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 28 28 H 1.08996 * 109.47384 * 305.00224 * 4 2 1 29 29 H 1.08994 * 109.47052 * 65.00451 * 4 2 1 30 30 H 0.97006 * 119.99748 * 359.97438 * 7 5 4 31 31 H 0.96996 * 120.00421 * 180.02562 * 11 10 8 32 32 H 0.97001 * 119.99790 * 264.99588 * 16 2 1 33 33 H 1.08993 * 109.47916 * 59.99687 * 19 17 16 34 34 H 1.09001 * 109.47406 * 300.00436 * 20 19 17 35 35 H 1.09001 * 109.47038 * 60.00421 * 20 19 17 36 36 H 1.08998 * 109.47370 * 299.99625 * 21 20 19 37 37 H 1.09009 * 109.46771 * 180.02562 * 21 20 19 38 38 H 1.08995 * 109.46891 * 179.97438 * 22 21 20 39 39 H 1.09001 * 109.47054 * 60.00027 * 22 21 20 40 40 H 1.09001 * 109.47191 * 299.99807 * 23 22 21 41 41 H 1.09001 * 109.47143 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.47250 * 179.97438 * 24 23 22 43 43 H 1.09007 * 109.46897 * 60.00287 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 8 4.1450 -0.0203 0.4446 7 7 4.2149 -1.1804 2.3344 8 6 5.5812 -1.0832 2.3926 9 1 6.1182 -0.5537 1.6194 10 6 6.2751 -1.6667 3.4455 11 7 5.6217 -2.3113 4.3859 12 14 8.1368 -1.5348 3.5243 13 1 8.6284 -0.7645 2.3538 14 1 8.5313 -0.8399 4.7760 15 1 8.7306 -2.8958 3.5055 16 7 2.0184 -0.6906 -1.1961 17 6 2.1524 -0.0169 -2.3557 18 8 1.8639 1.1598 -2.4102 19 6 2.6607 -0.7259 -3.5845 20 6 4.0621 -1.2763 -3.3128 21 6 4.5784 -1.9955 -4.5606 22 6 4.6352 -1.0107 -5.7301 23 6 3.2338 -0.4603 -6.0018 24 6 2.7175 0.2589 -4.7540 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6053 -0.2617 2.1370 29 1 1.7517 -1.7714 1.2057 30 1 3.7324 -1.6556 3.0290 31 1 6.1060 -2.7183 5.1212 32 1 2.2491 -1.6318 -1.1525 33 1 1.9895 -1.5478 -3.8336 34 1 4.7334 -0.4544 -3.0638 35 1 4.0218 -1.9776 -2.4794 36 1 3.9074 -2.8175 -4.8100 37 1 5.5767 -2.3880 -4.3668 38 1 5.0034 -1.5231 -6.6189 39 1 5.3064 -0.1888 -5.4807 40 1 2.5627 -1.2822 -6.2512 41 1 3.2744 0.2417 -6.8347 42 1 1.7193 0.6515 -4.9478 43 1 3.3886 1.0809 -4.5046 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066645114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:20 Heat of formation + Delta-G solvation = -114.819269 kcal Electronic energy + Delta-G solvation = -22912.450336 eV Core-core repulsion = 19569.804189 eV Total energy + Delta-G solvation = -3342.646147 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.99854 -38.41541 -37.38689 -35.29754 -33.83710 -31.93817 -31.23278 -30.69856 -30.09309 -27.76866 -24.72072 -23.77736 -22.52566 -21.25353 -20.14976 -19.57401 -19.14776 -17.90439 -16.84037 -16.01109 -15.89053 -15.25932 -14.67511 -14.44685 -14.20731 -14.04010 -13.96157 -13.63537 -13.59887 -13.13799 -12.63660 -12.47733 -12.22381 -12.19059 -11.90007 -11.74562 -11.54166 -11.37462 -11.20713 -11.09293 -11.07263 -10.66531 -10.59684 -10.38036 -10.36288 -10.23497 -10.07133 -9.53779 -9.26940 -8.66372 -8.34646 -7.98146 -6.43998 -3.84601 3.05610 3.14220 3.25184 3.32302 3.57836 3.90485 4.15235 4.69132 4.71727 4.76692 4.83446 5.16026 5.19985 5.22515 5.24007 5.34242 5.42204 5.48365 5.52696 5.57644 5.61704 5.63812 5.81385 5.84822 5.87920 6.00912 6.02261 6.09526 6.11769 6.21158 6.23629 6.26657 6.35408 6.42444 6.49430 6.54079 6.93501 7.53279 7.92173 8.04379 8.58782 8.66597 9.16062 9.52738 10.04162 10.73739 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.004636 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.987063 B = 6037.832353 C = 7421.930877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.162 3.838 3 H 0.093 0.907 4 C -0.143 4.143 5 C 0.437 3.563 6 O -0.583 6.583 7 N -0.564 5.564 8 C -0.298 4.298 9 H 0.103 0.897 10 C 0.023 3.977 11 N -0.902 5.902 12 Si 0.927 3.073 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.282 1.282 16 N -0.705 5.705 17 C 0.524 3.476 18 O -0.550 6.550 19 C -0.103 4.103 20 C -0.109 4.109 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.098 4.098 25 H 0.054 0.946 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.392 0.608 31 H 0.271 0.729 32 H 0.395 0.605 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.001 -2.121 -13.522 15.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 H 0.111 0.889 4 C -0.184 4.184 5 C 0.223 3.777 6 O -0.468 6.468 7 N -0.200 5.200 8 C -0.428 4.428 9 H 0.120 0.880 10 C -0.179 4.179 11 N -0.543 5.543 12 Si 0.754 3.246 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.208 1.208 16 N -0.354 5.354 17 C 0.310 3.690 18 O -0.428 6.428 19 C -0.125 4.125 20 C -0.147 4.147 21 C -0.154 4.154 22 C -0.159 4.159 23 C -0.156 4.156 24 C -0.136 4.136 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.225 0.775 31 H 0.081 0.919 32 H 0.229 0.771 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.724 -0.964 -13.953 15.977 hybrid contribution 0.788 -0.850 0.843 1.433 sum -6.935 -1.814 -13.111 14.942 Atomic orbital electron populations 1.22192 0.95757 1.01713 1.02285 1.20582 0.92248 0.98299 0.83191 0.88943 1.21887 0.96100 1.01752 0.98693 1.19881 0.88403 0.84872 0.84590 1.90563 1.69680 1.46400 1.40150 1.41926 1.07544 1.48326 1.22238 1.19744 0.81757 1.32561 1.08735 0.87961 1.25245 1.00566 0.96601 0.95487 1.69615 1.36531 1.35866 1.12300 0.85833 0.82404 0.77966 0.78355 1.19263 1.20741 1.20766 1.45802 1.66639 1.13534 1.09470 1.20457 0.76852 0.87107 0.84553 1.90639 1.50864 1.16005 1.85270 1.21312 0.98395 0.99062 0.93706 1.21492 0.94639 1.00756 0.97795 1.21528 1.01252 0.97876 0.94781 1.21565 0.97188 0.99158 0.98025 1.21550 0.96653 0.99810 0.97537 1.21326 1.02047 0.97436 0.92802 0.92725 0.91745 0.92262 0.89051 0.90134 0.77507 0.91940 0.77100 0.89235 0.90924 0.91229 0.92083 0.91686 0.92261 0.91847 0.92166 0.91976 0.91562 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.49 37.16 0.35 -1.71 16 2 C 0.16 2.61 2.14 -67.93 -0.15 2.46 16 3 H 0.09 1.82 7.38 -51.93 -0.38 1.44 16 4 C -0.14 -2.34 5.24 -27.88 -0.15 -2.48 16 5 C 0.44 9.81 7.64 -10.98 -0.08 9.73 16 6 O -0.58 -15.14 14.93 5.55 0.08 -15.06 16 7 N -0.56 -13.85 5.29 -10.96 -0.06 -13.91 16 8 C -0.30 -8.17 9.68 -14.94 -0.14 -8.31 16 9 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 10 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 11 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 12 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 13 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 16 N -0.71 -11.02 4.11 -53.81 -0.22 -11.24 16 17 C 0.52 8.70 7.12 -10.99 -0.08 8.62 16 18 O -0.55 -11.05 15.64 5.55 0.09 -10.96 16 19 C -0.10 -1.34 2.53 -91.77 -0.23 -1.58 16 20 C -0.11 -1.45 5.10 -26.73 -0.14 -1.58 16 21 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 22 C -0.12 -1.22 5.92 -26.74 -0.16 -1.37 16 23 C -0.12 -1.16 5.92 -26.74 -0.16 -1.32 16 24 C -0.10 -1.23 4.49 -26.73 -0.12 -1.35 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.39 9.23 7.90 -40.82 -0.32 8.91 16 31 H 0.27 6.88 8.31 -40.82 -0.34 6.55 16 32 H 0.40 5.51 8.02 -40.82 -0.33 5.18 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 0.96 7.56 -51.93 -0.39 0.57 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 43 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 LS Contribution 348.97 15.07 5.26 5.26 Total: -1.00 -31.96 348.97 -7.73 -39.69 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -7.27 Total: 13.64 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -1.31 Total: 0.20 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.45 Total: -48.65 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: 0.17 Total: -26.02 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.96 -7.73 -39.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066645114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.131 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds