Wall clock time and date at job start Tue Mar 31 2020 05:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46944 * 119.99643 * 2 1 3 5 5 C 1.50704 * 109.47083 * 185.00194 * 4 2 1 6 6 O 1.21290 * 120.00110 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99973 * 180.02562 * 5 4 2 8 8 C 1.37099 * 120.00239 * 180.02562 * 7 5 4 9 9 H 1.08007 * 119.99458 * 359.97438 * 8 7 5 10 10 C 1.38943 * 120.00262 * 180.02562 * 8 7 5 11 11 N 1.31412 * 120.00174 * 359.97438 * 10 8 7 12 12 Si 1.86806 * 120.00113 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.46829 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47048 * 119.99666 * 12 10 8 15 15 H 1.48495 * 109.47006 * 239.99461 * 12 10 8 16 16 N 1.46499 * 109.47341 * 239.99755 * 2 1 3 17 17 C 1.34777 * 119.99665 * 85.27876 * 16 2 1 18 18 O 1.21283 * 119.99990 * 359.71991 * 17 16 2 19 19 C 1.50698 * 119.99538 * 179.72653 * 17 16 2 20 20 C 1.53001 * 109.47207 * 299.99218 * 19 17 16 21 21 C 1.52998 * 109.47157 * 180.02562 * 20 19 17 22 22 C 1.52999 * 109.47306 * 60.00300 * 21 20 19 23 23 C 1.52993 * 109.46873 * 300.00136 * 22 21 20 24 24 C 1.52998 * 109.47592 * 59.99643 * 23 22 21 25 25 H 1.08999 * 109.47091 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47098 * 300.00372 * 1 2 3 27 27 H 1.09001 * 109.46823 * 60.00339 * 1 2 3 28 28 H 1.08996 * 109.47384 * 305.00224 * 4 2 1 29 29 H 1.08994 * 109.47052 * 65.00451 * 4 2 1 30 30 H 0.97006 * 119.99748 * 359.97438 * 7 5 4 31 31 H 0.96996 * 120.00421 * 180.02562 * 11 10 8 32 32 H 0.97001 * 119.99790 * 264.99588 * 16 2 1 33 33 H 1.08993 * 109.47916 * 59.99687 * 19 17 16 34 34 H 1.09001 * 109.47406 * 300.00436 * 20 19 17 35 35 H 1.09001 * 109.47038 * 60.00421 * 20 19 17 36 36 H 1.08998 * 109.47370 * 299.99625 * 21 20 19 37 37 H 1.09009 * 109.46771 * 180.02562 * 21 20 19 38 38 H 1.08995 * 109.46891 * 179.97438 * 22 21 20 39 39 H 1.09001 * 109.47054 * 60.00027 * 22 21 20 40 40 H 1.09001 * 109.47191 * 299.99807 * 23 22 21 41 41 H 1.09001 * 109.47143 * 179.97438 * 23 22 21 42 42 H 1.09000 * 109.47250 * 179.97438 * 24 23 22 43 43 H 1.09007 * 109.46897 * 60.00287 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3128 6 8 4.1450 -0.0203 0.4446 7 7 4.2149 -1.1804 2.3344 8 6 5.5812 -1.0832 2.3926 9 1 6.1182 -0.5537 1.6194 10 6 6.2751 -1.6667 3.4455 11 7 5.6217 -2.3113 4.3859 12 14 8.1368 -1.5348 3.5243 13 1 8.6284 -0.7645 2.3538 14 1 8.5313 -0.8399 4.7760 15 1 8.7306 -2.8958 3.5055 16 7 2.0184 -0.6906 -1.1961 17 6 2.1524 -0.0169 -2.3557 18 8 1.8639 1.1598 -2.4102 19 6 2.6607 -0.7259 -3.5845 20 6 4.0621 -1.2763 -3.3128 21 6 4.5784 -1.9955 -4.5606 22 6 4.6352 -1.0107 -5.7301 23 6 3.2338 -0.4603 -6.0018 24 6 2.7175 0.2589 -4.7540 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6053 -0.2617 2.1370 29 1 1.7517 -1.7714 1.2057 30 1 3.7324 -1.6556 3.0290 31 1 6.1060 -2.7183 5.1212 32 1 2.2491 -1.6318 -1.1525 33 1 1.9895 -1.5478 -3.8336 34 1 4.7334 -0.4544 -3.0638 35 1 4.0218 -1.9776 -2.4794 36 1 3.9074 -2.8175 -4.8100 37 1 5.5767 -2.3880 -4.3668 38 1 5.0034 -1.5231 -6.6189 39 1 5.3064 -0.1888 -5.4807 40 1 2.5627 -1.2822 -6.2512 41 1 3.2744 0.2417 -6.8347 42 1 1.7193 0.6515 -4.9478 43 1 3.3886 1.0809 -4.5046 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066645114.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:19 Heat of formation + Delta-G solvation = -136.193177 kcal Electronic energy + Delta-G solvation = -22913.377178 eV Core-core repulsion = 19569.804189 eV Total energy + Delta-G solvation = -3343.572989 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.28373 -40.09947 -38.56158 -36.75916 -35.78482 -33.36203 -32.99533 -31.65943 -31.22647 -29.16764 -26.58020 -24.92643 -23.48046 -22.52662 -21.34399 -20.97274 -20.54740 -19.87388 -18.10565 -17.68900 -17.30525 -16.55175 -16.36982 -15.81827 -15.72618 -15.36928 -15.05593 -15.02884 -14.81575 -14.61648 -13.86690 -13.63093 -13.54491 -13.43484 -13.15062 -13.09965 -13.01057 -12.75720 -12.74048 -12.40318 -12.22806 -12.13848 -12.05188 -11.89964 -11.52769 -11.50560 -11.35087 -11.01107 -10.55909 -10.32339 -10.00731 -9.90362 -8.46805 -5.94453 1.34650 1.40338 1.53548 1.74544 2.08123 2.28944 2.37940 3.19417 3.22079 3.66764 3.73959 3.79105 3.86461 4.21067 4.25446 4.30257 4.31549 4.32855 4.45079 4.55515 4.58875 4.63479 4.69136 4.70841 4.75677 4.89472 4.96175 5.11724 5.13046 5.18835 5.24472 5.25992 5.32383 5.35472 5.39499 5.41891 5.55021 5.66827 6.00635 6.60710 6.66707 7.14158 7.38345 7.58686 8.15030 8.70698 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.015869 B = 0.004636 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.987063 B = 6037.832353 C = 7421.930877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.160 3.840 3 H 0.047 0.953 4 C -0.129 4.129 5 C 0.436 3.564 6 O -0.624 6.624 7 N -0.574 5.574 8 C -0.330 4.330 9 H 0.074 0.926 10 C -0.010 4.010 11 N -0.919 5.919 12 Si 0.987 3.013 13 H -0.277 1.277 14 H -0.272 1.272 15 H -0.269 1.269 16 N -0.701 5.701 17 C 0.513 3.487 18 O -0.593 6.593 19 C -0.096 4.096 20 C -0.105 4.105 21 C -0.112 4.112 22 C -0.122 4.122 23 C -0.110 4.110 24 C -0.097 4.097 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.046 0.954 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.397 0.603 31 H 0.277 0.723 32 H 0.405 0.595 33 H 0.124 0.876 34 H 0.032 0.968 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.045 0.955 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.009 -4.159 -14.082 17.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.055 3.945 3 H 0.066 0.934 4 C -0.169 4.169 5 C 0.224 3.776 6 O -0.510 6.510 7 N -0.211 5.211 8 C -0.459 4.459 9 H 0.092 0.908 10 C -0.210 4.210 11 N -0.560 5.560 12 Si 0.811 3.189 13 H -0.202 1.202 14 H -0.198 1.198 15 H -0.194 1.194 16 N -0.351 5.351 17 C 0.301 3.699 18 O -0.474 6.474 19 C -0.117 4.117 20 C -0.143 4.143 21 C -0.149 4.149 22 C -0.160 4.160 23 C -0.148 4.148 24 C -0.135 4.135 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.231 0.769 31 H 0.086 0.914 32 H 0.240 0.760 33 H 0.142 0.858 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -8.749 -3.038 -14.491 17.198 hybrid contribution 1.092 -0.166 1.036 1.515 sum -7.657 -3.203 -13.454 15.808 Atomic orbital electron populations 1.22071 0.92444 1.03513 1.02572 1.20571 0.94658 0.95921 0.83348 0.93421 1.21866 0.90906 1.04288 0.99820 1.20970 0.90961 0.82741 0.82963 1.90553 1.71437 1.47610 1.41423 1.41971 1.06818 1.49162 1.23105 1.19626 0.83368 1.33924 1.09012 0.90785 1.25934 1.04454 0.95849 0.94773 1.69662 1.37977 1.35876 1.12508 0.84960 0.77522 0.78325 0.78079 1.20204 1.19777 1.19414 1.45841 1.66107 1.13931 1.09206 1.21189 0.76126 0.86821 0.85773 1.90611 1.52819 1.17930 1.86062 1.21351 0.98487 0.99732 0.92081 1.21434 0.94193 0.99430 0.99244 1.21521 1.01650 0.98316 0.93427 1.21583 0.97132 0.98662 0.98586 1.21525 0.96694 1.00425 0.96120 1.21312 1.01312 0.96817 0.94062 0.90049 0.90008 0.93493 0.86524 0.86563 0.76931 0.91363 0.75994 0.85802 0.94862 0.91962 0.89622 0.91744 0.89929 0.93569 0.89953 0.90889 0.91793 0.94294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.49 71.98 0.68 -2.78 16 2 C 0.16 5.10 2.14 44.99 0.10 5.20 16 3 H 0.05 1.96 7.38 -2.39 -0.02 1.94 16 4 C -0.13 -3.98 5.24 29.85 0.16 -3.82 16 5 C 0.44 19.79 7.64 87.66 0.67 20.46 16 6 O -0.62 -33.71 14.93 -3.06 -0.05 -33.75 16 7 N -0.57 -28.46 5.29 -306.98 -1.62 -30.08 16 8 C -0.33 -18.48 9.68 84.04 0.81 -17.66 16 9 H 0.07 4.50 7.16 -2.91 -0.02 4.48 16 10 C -0.01 -0.54 5.50 84.92 0.47 -0.08 16 11 N -0.92 -48.84 13.05 21.66 0.28 -48.55 16 12 Si 0.99 42.87 29.55 68.60 2.03 44.89 16 13 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 14 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 15 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 16 N -0.70 -21.84 4.11 -442.54 -1.82 -23.65 16 17 C 0.51 17.46 7.12 87.66 0.62 18.08 16 18 O -0.59 -25.02 15.64 -3.04 -0.05 -25.07 16 19 C -0.10 -2.45 2.53 -11.54 -0.03 -2.48 16 20 C -0.10 -2.83 5.10 30.59 0.16 -2.67 16 21 C -0.11 -2.21 5.92 30.59 0.18 -2.03 16 22 C -0.12 -2.24 5.92 30.59 0.18 -2.06 16 23 C -0.11 -1.95 5.92 30.59 0.18 -1.77 16 24 C -0.10 -2.42 4.49 30.59 0.14 -2.29 16 25 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.12 3.10 8.14 -2.39 -0.02 3.08 16 29 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 30 H 0.40 18.60 7.90 -92.70 -0.73 17.86 16 31 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 32 H 0.40 10.88 8.02 -92.71 -0.74 10.14 16 33 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.06 1.73 7.56 -2.39 -0.02 1.71 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.06 1.61 8.10 -2.39 -0.02 1.59 16 43 H 0.04 1.19 8.10 -2.38 -0.02 1.17 16 Total: -1.00 -72.90 348.97 2.62 -70.28 By element: Atomic # 1 Polarization: 40.31 SS G_CDS: -0.47 Total: 39.83 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: 4.32 Total: 6.10 kcal Atomic # 7 Polarization: -99.13 SS G_CDS: -3.16 Total: -102.29 kcal Atomic # 8 Polarization: -58.73 SS G_CDS: -0.09 Total: -58.82 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -72.90 2.62 -70.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066645114.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.913 kcal (2) G-P(sol) polarization free energy of solvation -72.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds