Wall clock time and date at job start Tue Mar 31 2020 05:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 5 5 C 1.50699 * 109.46636 * 174.99847 * 4 2 1 6 6 O 1.21293 * 120.00536 * 0.02562 * 5 4 2 7 7 N 1.34784 * 119.99691 * 179.97438 * 5 4 2 8 8 C 1.37095 * 119.99842 * 180.02562 * 7 5 4 9 9 H 1.08000 * 119.99997 * 0.02562 * 8 7 5 10 10 C 1.38946 * 119.99996 * 180.02562 * 8 7 5 11 11 N 1.31406 * 120.00108 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00011 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47343 * 59.99947 * 12 10 8 14 14 H 1.48506 * 109.46902 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47191 * 299.99812 * 12 10 8 16 16 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 17 17 C 1.34784 * 119.99635 * 274.99773 * 16 2 1 18 18 O 1.21279 * 119.99925 * 359.97438 * 17 16 2 19 19 C 1.50700 * 119.99961 * 180.02562 * 17 16 2 20 20 C 1.53003 * 109.46986 * 300.00090 * 19 17 16 21 21 C 1.53005 * 109.47219 * 180.02562 * 20 19 17 22 22 C 1.52994 * 109.46906 * 59.99762 * 21 20 19 23 23 C 1.52998 * 109.47366 * 299.99803 * 22 21 20 24 24 C 1.52992 * 109.47257 * 180.02562 * 19 17 16 25 25 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 26 26 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 27 27 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47373 * 295.00066 * 4 2 1 29 29 H 1.09001 * 109.47302 * 55.00561 * 4 2 1 30 30 H 0.96994 * 119.99679 * 0.02562 * 7 5 4 31 31 H 0.97005 * 120.00588 * 180.02562 * 11 10 8 32 32 H 0.96995 * 120.00292 * 95.27206 * 16 2 1 33 33 H 1.08997 * 109.47392 * 59.99562 * 19 17 16 34 34 H 1.09005 * 109.46932 * 299.99942 * 20 19 17 35 35 H 1.08998 * 109.47453 * 59.99968 * 20 19 17 36 36 H 1.09000 * 109.46608 * 299.99989 * 21 20 19 37 37 H 1.08999 * 109.46783 * 179.97438 * 21 20 19 38 38 H 1.09005 * 109.46734 * 180.02562 * 22 21 20 39 39 H 1.08992 * 109.47456 * 60.00368 * 22 21 20 40 40 H 1.09000 * 109.47603 * 300.00663 * 23 22 21 41 41 H 1.08998 * 109.47444 * 180.02562 * 23 22 21 42 42 H 1.09004 * 109.47330 * 299.99977 * 24 19 17 43 43 H 1.09005 * 109.47124 * 59.99773 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 8 4.1451 -0.0211 -0.4441 7 7 4.2149 -1.1805 -2.3344 8 6 5.5812 -1.0842 -2.3919 9 1 6.1183 -0.5555 -1.6184 10 6 6.2750 -1.6668 -3.4454 11 7 5.6216 -2.3106 -4.3863 12 14 8.1369 -1.5362 -3.5234 13 1 8.7282 -2.1632 -2.3141 14 1 8.6317 -2.2355 -4.7364 15 1 8.5307 -0.1056 -3.5821 16 7 2.0184 -0.6907 1.1961 17 6 2.1471 -0.0183 2.3571 18 8 1.8591 1.1585 2.4114 19 6 2.6500 -0.7286 3.5874 20 6 1.7064 -1.8829 3.9313 21 6 2.2166 -2.6037 5.1808 22 6 2.2675 -1.6203 6.3518 23 6 3.2111 -0.4661 6.0079 24 6 2.7008 0.2542 4.7588 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7516 -1.7715 -1.2057 29 1 1.6054 -0.2617 -2.1370 30 1 3.7325 -1.6557 -3.0289 31 1 6.1059 -2.7177 -5.1216 32 1 2.2528 -1.6308 1.1515 33 1 3.6492 -1.1205 3.3978 34 1 0.7070 -1.4910 4.1210 35 1 1.6698 -2.5832 3.0969 36 1 3.2160 -2.9954 4.9916 37 1 1.5441 -3.4257 5.4260 38 1 2.6314 -2.1338 7.2418 39 1 1.2681 -1.2286 6.5410 40 1 4.2105 -0.8578 5.8186 41 1 3.2477 0.2342 6.8423 42 1 3.3727 1.0769 4.5140 43 1 1.7012 0.6457 4.9482 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066645115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:22 Heat of formation + Delta-G solvation = -114.977509 kcal Electronic energy + Delta-G solvation = -22721.473062 eV Core-core repulsion = 19378.820054 eV Total energy + Delta-G solvation = -3342.653009 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.02593 -38.44069 -37.42870 -35.30264 -33.84225 -31.96592 -31.24320 -30.78293 -30.14672 -27.77201 -24.71668 -23.82093 -22.64120 -21.26850 -20.20695 -19.60643 -19.15449 -17.91020 -16.87324 -16.07736 -15.87929 -15.17044 -14.74965 -14.57723 -14.28119 -14.16112 -13.98513 -13.70772 -13.42103 -13.11689 -12.83547 -12.51227 -12.29039 -12.21341 -11.93878 -11.73655 -11.54605 -11.35593 -11.27584 -11.20804 -11.03389 -10.72564 -10.63404 -10.45947 -10.44905 -10.22449 -10.16903 -9.52122 -9.28385 -8.66404 -8.35292 -7.98509 -6.43904 -3.84718 3.06925 3.18183 3.24151 3.28685 3.55635 3.90213 4.15274 4.60453 4.63775 4.67095 4.82484 5.10834 5.13881 5.18846 5.22296 5.30085 5.35270 5.40321 5.46183 5.53858 5.57198 5.61868 5.74774 5.84096 5.87969 5.91628 5.99075 6.00822 6.01521 6.07356 6.14246 6.22130 6.29590 6.39650 6.42279 6.54179 6.93482 7.52847 7.92117 8.03869 8.58722 8.66492 9.15702 9.52413 10.04040 10.73649 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018388 B = 0.003978 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.364964 B = 7036.336629 C = 7875.219555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.162 3.838 3 H 0.092 0.908 4 C -0.143 4.143 5 C 0.436 3.564 6 O -0.585 6.585 7 N -0.563 5.563 8 C -0.301 4.301 9 H 0.102 0.898 10 C 0.023 3.977 11 N -0.902 5.902 12 Si 0.929 3.071 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.274 1.274 16 N -0.705 5.705 17 C 0.525 3.475 18 O -0.550 6.550 19 C -0.107 4.107 20 C -0.109 4.109 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.097 4.097 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.392 0.608 31 H 0.272 0.728 32 H 0.395 0.605 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.904 -2.668 14.003 17.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.057 3.943 3 H 0.110 0.890 4 C -0.184 4.184 5 C 0.222 3.778 6 O -0.470 6.470 7 N -0.199 5.199 8 C -0.430 4.430 9 H 0.119 0.881 10 C -0.178 4.178 11 N -0.543 5.543 12 Si 0.757 3.243 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.199 1.199 16 N -0.354 5.354 17 C 0.311 3.689 18 O -0.428 6.428 19 C -0.129 4.129 20 C -0.146 4.146 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.158 4.158 24 C -0.135 4.135 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.225 0.775 31 H 0.082 0.918 32 H 0.229 0.771 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.629 -1.519 14.422 17.407 hybrid contribution 0.858 -0.819 -0.818 1.441 sum -8.770 -2.337 13.603 16.354 Atomic orbital electron populations 1.22189 0.95729 1.01713 1.02279 1.20584 0.92266 0.98292 0.83183 0.88955 1.21884 0.96036 1.01768 0.98708 1.19889 0.88431 0.84895 0.84586 1.90562 1.69713 1.46549 1.40191 1.41910 1.07515 1.48269 1.22233 1.19654 0.81789 1.32848 1.08758 0.88061 1.25247 1.00609 0.96546 0.95435 1.69598 1.36742 1.35722 1.12249 0.85938 0.82240 0.78604 0.77564 1.19931 1.20949 1.19904 1.45798 1.66620 1.13659 1.09351 1.20415 0.76946 0.87038 0.84460 1.90639 1.50720 1.16010 1.85399 1.21336 1.01090 0.96880 0.93547 1.21512 0.98735 0.96211 0.98187 1.21533 1.01582 0.97752 0.94721 1.21553 0.99965 0.96547 0.97713 1.21563 0.99209 0.97370 0.97667 1.21301 1.02404 0.97138 0.92668 0.92256 0.91757 0.92718 0.90106 0.89022 0.77477 0.91812 0.77092 0.88515 0.91578 0.91516 0.91661 0.91854 0.92184 0.92044 0.91886 0.91890 0.91221 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 9.48 37.16 0.35 -1.70 16 2 C 0.16 2.62 2.14 -67.93 -0.15 2.47 16 3 H 0.09 1.83 7.39 -51.93 -0.38 1.44 16 4 C -0.14 -2.34 5.24 -27.88 -0.15 -2.49 16 5 C 0.44 9.91 7.64 -10.98 -0.08 9.82 16 6 O -0.59 -15.45 14.93 5.55 0.08 -15.36 16 7 N -0.56 -13.94 5.29 -10.96 -0.06 -14.00 16 8 C -0.30 -8.30 9.68 -14.94 -0.14 -8.45 16 9 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 10 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 11 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 12 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 N -0.70 -11.07 4.11 -53.80 -0.22 -11.29 16 17 C 0.53 8.74 7.12 -10.98 -0.08 8.66 16 18 O -0.55 -11.06 15.64 5.56 0.09 -10.97 16 19 C -0.11 -1.39 2.53 -91.77 -0.23 -1.63 16 20 C -0.11 -1.11 5.10 -26.73 -0.14 -1.24 16 21 C -0.12 -1.03 5.92 -26.73 -0.16 -1.19 16 22 C -0.12 -1.03 5.92 -26.74 -0.16 -1.19 16 23 C -0.12 -1.18 5.92 -26.75 -0.16 -1.34 16 24 C -0.10 -1.21 4.49 -26.76 -0.12 -1.33 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 31 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.40 5.54 8.03 -40.82 -0.33 5.21 16 33 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.63 7.57 -51.93 -0.39 0.24 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 43 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 LS Contribution 348.98 15.07 5.26 5.26 Total: -1.00 -32.33 348.98 -7.73 -40.05 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -7.27 Total: 13.01 kcal Atomic # 6 Polarization: 2.23 SS G_CDS: -1.31 Total: 0.93 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.45 Total: -48.86 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: 0.17 Total: -26.34 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.33 -7.73 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066645115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.923 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds