Wall clock time and date at job start Tue Mar 31 2020 05:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 5 5 C 1.50699 * 109.46636 * 174.99847 * 4 2 1 6 6 O 1.21293 * 120.00536 * 0.02562 * 5 4 2 7 7 N 1.34784 * 119.99691 * 179.97438 * 5 4 2 8 8 C 1.37095 * 119.99842 * 180.02562 * 7 5 4 9 9 H 1.08000 * 119.99997 * 0.02562 * 8 7 5 10 10 C 1.38946 * 119.99996 * 180.02562 * 8 7 5 11 11 N 1.31406 * 120.00108 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00011 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47343 * 59.99947 * 12 10 8 14 14 H 1.48506 * 109.46902 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47191 * 299.99812 * 12 10 8 16 16 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 17 17 C 1.34784 * 119.99635 * 274.99773 * 16 2 1 18 18 O 1.21279 * 119.99925 * 359.97438 * 17 16 2 19 19 C 1.50700 * 119.99961 * 180.02562 * 17 16 2 20 20 C 1.53003 * 109.46986 * 300.00090 * 19 17 16 21 21 C 1.53005 * 109.47219 * 180.02562 * 20 19 17 22 22 C 1.52994 * 109.46906 * 59.99762 * 21 20 19 23 23 C 1.52998 * 109.47366 * 299.99803 * 22 21 20 24 24 C 1.52992 * 109.47257 * 180.02562 * 19 17 16 25 25 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 26 26 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 27 27 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47373 * 295.00066 * 4 2 1 29 29 H 1.09001 * 109.47302 * 55.00561 * 4 2 1 30 30 H 0.96994 * 119.99679 * 0.02562 * 7 5 4 31 31 H 0.97005 * 120.00588 * 180.02562 * 11 10 8 32 32 H 0.96995 * 120.00292 * 95.27206 * 16 2 1 33 33 H 1.08997 * 109.47392 * 59.99562 * 19 17 16 34 34 H 1.09005 * 109.46932 * 299.99942 * 20 19 17 35 35 H 1.08998 * 109.47453 * 59.99968 * 20 19 17 36 36 H 1.09000 * 109.46608 * 299.99989 * 21 20 19 37 37 H 1.08999 * 109.46783 * 179.97438 * 21 20 19 38 38 H 1.09005 * 109.46734 * 180.02562 * 22 21 20 39 39 H 1.08992 * 109.47456 * 60.00368 * 22 21 20 40 40 H 1.09000 * 109.47603 * 300.00663 * 23 22 21 41 41 H 1.08998 * 109.47444 * 180.02562 * 23 22 21 42 42 H 1.09004 * 109.47330 * 299.99977 * 24 19 17 43 43 H 1.09005 * 109.47124 * 59.99773 * 24 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6149 -1.3128 6 8 4.1451 -0.0211 -0.4441 7 7 4.2149 -1.1805 -2.3344 8 6 5.5812 -1.0842 -2.3919 9 1 6.1183 -0.5555 -1.6184 10 6 6.2750 -1.6668 -3.4454 11 7 5.6216 -2.3106 -4.3863 12 14 8.1369 -1.5362 -3.5234 13 1 8.7282 -2.1632 -2.3141 14 1 8.6317 -2.2355 -4.7364 15 1 8.5307 -0.1056 -3.5821 16 7 2.0184 -0.6907 1.1961 17 6 2.1471 -0.0183 2.3571 18 8 1.8591 1.1585 2.4114 19 6 2.6500 -0.7286 3.5874 20 6 1.7064 -1.8829 3.9313 21 6 2.2166 -2.6037 5.1808 22 6 2.2675 -1.6203 6.3518 23 6 3.2111 -0.4661 6.0079 24 6 2.7008 0.2542 4.7588 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.7516 -1.7715 -1.2057 29 1 1.6054 -0.2617 -2.1370 30 1 3.7325 -1.6557 -3.0289 31 1 6.1059 -2.7177 -5.1216 32 1 2.2528 -1.6308 1.1515 33 1 3.6492 -1.1205 3.3978 34 1 0.7070 -1.4910 4.1210 35 1 1.6698 -2.5832 3.0969 36 1 3.2160 -2.9954 4.9916 37 1 1.5441 -3.4257 5.4260 38 1 2.6314 -2.1338 7.2418 39 1 1.2681 -1.2286 6.5410 40 1 4.2105 -0.8578 5.8186 41 1 3.2477 0.2342 6.8423 42 1 3.3727 1.0769 4.5140 43 1 1.7012 0.6457 4.9482 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066645115.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:22 Heat of formation + Delta-G solvation = -136.543848 kcal Electronic energy + Delta-G solvation = -22722.408249 eV Core-core repulsion = 19378.820054 eV Total energy + Delta-G solvation = -3343.588195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.28801 -40.11329 -38.55115 -36.76284 -35.79645 -33.36876 -32.99714 -31.64580 -31.22949 -29.17497 -26.57924 -24.90150 -23.48909 -22.51704 -21.35212 -20.97660 -20.54343 -19.88256 -18.11897 -17.69152 -17.33014 -16.56195 -16.22525 -15.92524 -15.75867 -15.45671 -15.02608 -14.99881 -14.83573 -14.46334 -13.86349 -13.80476 -13.55244 -13.27024 -13.20472 -13.07564 -13.03237 -12.74512 -12.73165 -12.43563 -12.20754 -12.13810 -12.04229 -11.90499 -11.52386 -11.50421 -11.34510 -11.00314 -10.55509 -10.34087 -10.01842 -9.90882 -8.46979 -5.95143 1.38062 1.40514 1.50744 1.75964 2.07235 2.29038 2.35802 3.18984 3.21636 3.65471 3.74690 3.81077 3.86062 4.20649 4.26112 4.29436 4.32503 4.36082 4.45779 4.56422 4.59832 4.62774 4.70620 4.72582 4.75837 4.89291 4.96848 5.12392 5.12834 5.18012 5.24833 5.26230 5.33020 5.36342 5.39887 5.41017 5.55643 5.66421 5.99738 6.60049 6.66312 7.13135 7.37879 7.57742 8.14073 8.70000 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018388 B = 0.003978 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.364964 B = 7036.336629 C = 7875.219555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.160 3.840 3 H 0.048 0.952 4 C -0.128 4.128 5 C 0.435 3.565 6 O -0.627 6.627 7 N -0.572 5.572 8 C -0.334 4.334 9 H 0.075 0.925 10 C -0.010 4.010 11 N -0.919 5.919 12 Si 0.988 3.012 13 H -0.272 1.272 14 H -0.269 1.269 15 H -0.276 1.276 16 N -0.701 5.701 17 C 0.515 3.485 18 O -0.593 6.593 19 C -0.103 4.103 20 C -0.102 4.102 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.116 4.116 24 C -0.096 4.096 25 H 0.045 0.955 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.117 0.883 30 H 0.397 0.603 31 H 0.278 0.722 32 H 0.405 0.595 33 H 0.092 0.908 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.042 0.958 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.798 -4.599 14.242 18.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.055 3.945 3 H 0.066 0.934 4 C -0.168 4.168 5 C 0.223 3.777 6 O -0.514 6.514 7 N -0.209 5.209 8 C -0.464 4.464 9 H 0.093 0.907 10 C -0.210 4.210 11 N -0.559 5.559 12 Si 0.812 3.188 13 H -0.197 1.197 14 H -0.194 1.194 15 H -0.201 1.201 16 N -0.351 5.351 17 C 0.303 3.697 18 O -0.474 6.474 19 C -0.124 4.124 20 C -0.140 4.140 21 C -0.153 4.153 22 C -0.156 4.156 23 C -0.154 4.154 24 C -0.134 4.134 25 H 0.065 0.935 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.135 0.865 29 H 0.135 0.865 30 H 0.231 0.769 31 H 0.087 0.913 32 H 0.240 0.760 33 H 0.110 0.890 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.543 -3.487 14.641 18.376 hybrid contribution 1.125 -0.161 -0.902 1.451 sum -9.418 -3.648 13.739 17.052 Atomic orbital electron populations 1.22069 0.92430 1.03521 1.02549 1.20576 0.94672 0.95930 0.83325 0.93396 1.21865 0.90788 1.04333 0.99842 1.20988 0.91012 0.82749 0.82950 1.90545 1.71499 1.47838 1.41522 1.41961 1.06812 1.49064 1.23088 1.19584 0.83413 1.34273 1.09117 0.90706 1.25954 1.04570 0.95754 0.94700 1.69650 1.38188 1.35685 1.12425 0.85064 0.77294 0.78422 0.78018 1.19681 1.19374 1.20128 1.45835 1.66104 1.14045 1.09070 1.21128 0.76239 0.86726 0.85631 1.90609 1.52721 1.17920 1.86157 1.21364 1.01359 0.97714 0.91962 1.21510 0.97853 0.95145 0.99523 1.21544 1.02000 0.98045 0.93748 1.21558 0.99714 0.95938 0.98347 1.21545 0.99478 0.97973 0.96377 1.21275 1.01453 0.96659 0.93978 0.93545 0.89992 0.90030 0.86497 0.86452 0.76883 0.91297 0.76000 0.88990 0.91527 0.90500 0.91631 0.89932 0.90449 0.91783 0.91878 0.90954 0.93924 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.48 71.98 0.68 -2.77 16 2 C 0.16 5.10 2.14 45.00 0.10 5.20 16 3 H 0.05 1.97 7.39 -2.39 -0.02 1.95 16 4 C -0.13 -3.96 5.24 29.85 0.16 -3.81 16 5 C 0.43 19.84 7.64 87.66 0.67 20.51 16 6 O -0.63 -34.13 14.93 -3.07 -0.05 -34.18 16 7 N -0.57 -28.48 5.29 -306.98 -1.62 -30.10 16 8 C -0.33 -18.77 9.68 84.04 0.81 -17.96 16 9 H 0.07 4.53 7.16 -2.91 -0.02 4.50 16 10 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 11 N -0.92 -48.82 13.05 21.66 0.28 -48.54 16 12 Si 0.99 42.76 29.55 68.60 2.03 44.79 16 13 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 14 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 15 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 16 N -0.70 -21.89 4.11 -442.53 -1.82 -23.71 16 17 C 0.51 17.63 7.12 87.66 0.62 18.25 16 18 O -0.59 -25.09 15.64 -3.03 -0.05 -25.14 16 19 C -0.10 -2.69 2.53 -11.54 -0.03 -2.72 16 20 C -0.10 -1.93 5.10 30.60 0.16 -1.77 16 21 C -0.12 -1.74 5.92 30.59 0.18 -1.56 16 22 C -0.12 -1.76 5.92 30.59 0.18 -1.58 16 23 C -0.12 -2.18 5.92 30.58 0.18 -2.00 16 24 C -0.10 -2.45 4.49 30.58 0.14 -2.32 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 30 H 0.40 18.62 7.90 -92.71 -0.73 17.89 16 31 H 0.28 13.87 8.31 -92.70 -0.77 13.10 16 32 H 0.40 10.92 8.03 -92.71 -0.74 10.18 16 33 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.08 1.29 7.57 -2.39 -0.02 1.27 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.04 1.29 8.10 -2.38 -0.02 1.27 16 43 H 0.06 1.60 8.10 -2.38 -0.02 1.58 16 Total: -1.00 -72.63 348.98 2.62 -70.01 By element: Atomic # 1 Polarization: 39.92 SS G_CDS: -0.47 Total: 39.45 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 4.32 Total: 7.42 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -3.16 Total: -102.36 kcal Atomic # 8 Polarization: -59.22 SS G_CDS: -0.09 Total: -59.31 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -72.63 2.62 -70.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066645115.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.533 kcal (2) G-P(sol) polarization free energy of solvation -72.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds