Wall clock time and date at job start Tue Mar 31 2020 06:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47138 * 2 1 4 4 C 1.37103 * 120.00085 * 273.81294 * 3 2 1 5 5 H 1.07991 * 120.00073 * 182.84029 * 4 3 2 6 6 C 1.38955 * 119.99546 * 3.10893 * 4 3 2 7 7 N 1.31407 * 120.00254 * 15.69765 * 6 4 3 8 8 Si 1.86799 * 119.99622 * 195.69345 * 6 4 3 9 9 H 1.48503 * 109.47101 * 90.00765 * 8 6 4 10 10 H 1.48507 * 109.47326 * 210.00199 * 8 6 4 11 11 H 1.48500 * 109.47663 * 330.00311 * 8 6 4 12 12 C 1.34774 * 120.00336 * 93.81333 * 3 2 1 13 13 O 1.21287 * 120.00181 * 174.90684 * 12 3 2 14 14 C 1.50708 * 119.99680 * 354.90632 * 12 3 2 15 15 H 1.08999 * 109.47157 * 328.59544 * 14 12 3 16 16 N 1.46505 * 109.46787 * 208.59788 * 14 12 3 17 17 C 1.34767 * 119.99857 * 144.71182 * 16 14 12 18 18 C 1.50701 * 120.00155 * 183.72295 * 17 16 14 19 19 O 1.21289 * 120.00054 * 3.71994 * 17 16 14 20 20 C 1.52993 * 109.46750 * 88.59568 * 14 12 3 21 21 C 1.54275 * 110.02744 * 179.26937 * 20 14 12 22 22 C 1.54889 * 104.19159 * 217.10521 * 21 20 14 23 23 C 1.54891 * 102.75468 * 37.94631 * 22 21 20 24 24 C 1.53877 * 110.03520 * 62.10621 * 20 14 12 25 25 H 1.08997 * 109.47377 * 60.36751 * 1 2 3 26 26 H 1.08996 * 109.47561 * 180.37321 * 1 2 3 27 27 H 1.09009 * 109.47227 * 300.37052 * 1 2 3 28 28 H 1.08995 * 109.46791 * 240.00312 * 2 1 3 29 29 H 1.08995 * 109.47144 * 120.00123 * 2 1 3 30 30 H 0.97003 * 120.00376 * 179.97438 * 7 6 4 31 31 H 0.96998 * 119.99936 * 324.70155 * 16 14 12 32 32 H 1.08995 * 109.46997 * 359.97438 * 18 17 16 33 33 H 1.09004 * 109.47063 * 119.99779 * 18 17 16 34 34 H 1.09006 * 109.47031 * 239.99679 * 18 17 16 35 35 H 1.09001 * 110.02254 * 300.70958 * 20 14 12 36 36 H 1.08998 * 110.48844 * 335.77878 * 21 20 14 37 37 H 1.08999 * 110.48654 * 98.43031 * 21 20 14 38 38 H 1.08999 * 110.75977 * 279.62542 * 22 21 20 39 39 H 1.09004 * 110.75786 * 156.25860 * 22 21 20 40 40 H 1.08999 * 110.48798 * 203.37870 * 23 22 21 41 41 H 1.08999 * 110.60055 * 80.78581 * 23 22 21 42 42 H 1.08997 * 110.03163 * 238.56445 * 24 20 14 43 43 H 1.09003 * 110.02963 * 359.94488 * 24 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1724 2.0539 -1.1847 5 1 2.5756 3.0557 -1.1884 6 6 1.8045 1.4486 -2.3802 7 7 1.0371 0.3819 -2.3677 8 14 2.4008 2.1512 -4.0050 9 1 3.6945 1.5210 -4.3718 10 1 1.3968 1.8725 -5.0632 11 1 2.5852 3.6187 -3.8719 12 6 2.3161 1.9907 1.1646 13 8 2.8071 3.0998 1.1604 14 6 2.0391 1.2942 2.4720 15 1 1.1659 0.6509 2.3631 16 7 1.7831 2.2930 3.5127 17 6 0.8807 2.0407 4.4814 18 6 0.5558 3.0999 5.5030 19 8 0.3299 0.9612 4.5309 20 6 3.2509 0.4469 2.8651 21 6 2.9881 -0.2580 4.2119 22 6 4.3603 -0.2291 4.9298 23 6 4.9208 1.1612 4.5400 24 6 4.4797 1.3493 3.0737 25 1 -0.3634 0.5081 -0.8932 26 1 -0.3634 -1.0276 0.0067 27 1 -0.3634 0.5196 0.8867 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.7799 -0.0404 -3.2022 31 1 2.2632 3.1358 3.5047 32 1 1.1445 3.9942 5.2989 33 1 -0.5054 3.3430 5.4494 34 1 0.7937 2.7284 6.4998 35 1 3.4571 -0.2915 2.0903 36 1 2.2435 0.2892 4.7901 37 1 2.6651 -1.2861 4.0478 38 1 5.0071 -1.0242 4.5591 39 1 4.2330 -0.3052 6.0097 40 1 6.0082 1.1690 4.6152 41 1 4.4902 1.9390 5.1707 42 1 5.2825 1.0483 2.4008 43 1 4.2129 2.3908 2.8939 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068915935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:49 Heat of formation + Delta-G solvation = -67.639036 kcal Electronic energy + Delta-G solvation = -24271.145876 eV Core-core repulsion = 20930.545618 eV Total energy + Delta-G solvation = -3340.600258 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.26763 -38.38721 -37.23878 -35.26447 -33.77294 -31.88640 -30.63647 -29.39946 -28.60058 -28.35557 -25.84774 -24.01616 -22.07134 -20.69103 -20.32759 -19.54538 -18.73526 -17.09253 -16.73267 -16.04543 -15.79602 -15.53549 -14.91004 -14.48040 -14.28221 -13.94133 -13.55398 -13.14674 -12.99799 -12.89475 -12.79159 -12.46917 -12.15030 -11.88157 -11.77159 -11.28141 -11.13465 -10.92104 -10.80861 -10.75531 -10.72550 -10.54653 -10.35064 -10.30302 -10.23266 -10.10871 -9.84276 -9.59132 -8.90585 -8.85676 -8.22085 -7.80830 -6.29652 -3.84214 2.88735 3.11834 3.22969 3.27177 3.47529 3.86011 4.09944 4.73593 4.92197 4.97286 5.03146 5.08917 5.13532 5.29392 5.47191 5.57510 5.62043 5.76348 5.82626 5.85290 5.91150 5.92298 5.98713 6.13254 6.17861 6.24587 6.27210 6.40605 6.58643 6.65257 6.68248 6.74145 6.76327 6.80909 6.92666 7.35483 7.51987 7.80435 7.88354 8.02771 8.46155 8.54049 9.11944 9.39209 9.89905 10.61548 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020497 B = 0.005736 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.711354 B = 4880.060759 C = 5189.992579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.116 3.884 3 N -0.433 5.433 4 C -0.298 4.298 5 H 0.105 0.895 6 C 0.025 3.975 7 N -0.871 5.871 8 Si 0.928 3.072 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 C 0.436 3.564 13 O -0.595 6.595 14 C 0.136 3.864 15 H 0.104 0.896 16 N -0.698 5.698 17 C 0.508 3.492 18 C -0.170 4.170 19 O -0.552 6.552 20 C -0.093 4.093 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.119 4.119 24 C -0.121 4.121 25 H 0.095 0.905 26 H 0.036 0.964 27 H 0.017 0.983 28 H 0.112 0.888 29 H 0.031 0.969 30 H 0.266 0.734 31 H 0.406 0.594 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.716 -0.330 11.409 11.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.007 4.007 3 N -0.151 5.151 4 C -0.426 4.426 5 H 0.123 0.877 6 C -0.177 4.177 7 N -0.512 5.512 8 Si 0.755 3.245 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.195 1.195 12 C 0.224 3.776 13 O -0.481 6.481 14 C 0.028 3.972 15 H 0.122 0.878 16 N -0.351 5.351 17 C 0.296 3.704 18 C -0.230 4.230 19 O -0.431 6.431 20 C -0.114 4.114 21 C -0.162 4.162 22 C -0.161 4.161 23 C -0.157 4.157 24 C -0.159 4.159 25 H 0.114 0.886 26 H 0.055 0.945 27 H 0.036 0.964 28 H 0.130 0.870 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.242 0.758 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.460 -0.677 11.224 11.511 hybrid contribution 0.352 0.491 -0.937 1.115 sum 2.812 -0.186 10.287 10.667 Atomic orbital electron populations 1.22164 0.96473 0.99766 1.01682 1.21782 0.94954 0.83152 1.00856 1.43816 1.54496 1.11886 1.04852 1.19815 1.39579 1.00890 0.82310 0.87702 1.25262 0.95945 0.96802 0.99683 1.70161 1.32308 1.21521 1.27198 0.85892 0.78427 0.79367 0.80820 1.20401 1.21013 1.19533 1.19778 0.86036 0.87211 0.84611 1.90469 1.49630 1.21191 1.86800 1.20836 0.99371 0.90154 0.86873 0.87807 1.45845 1.41700 1.20891 1.26630 1.20692 0.78620 0.88906 0.82229 1.21829 1.04143 0.98179 0.98814 1.90695 1.52353 1.25463 1.74603 1.22087 0.94385 0.96876 0.98010 1.22598 0.97290 1.00466 0.95806 1.22488 0.97036 0.97244 0.99376 1.22321 0.99620 0.96937 0.96822 1.22193 0.96728 1.01326 0.95607 0.88638 0.94501 0.96404 0.87038 0.95033 0.92303 0.75765 0.90635 0.88934 0.89123 0.90268 0.89880 0.92170 0.91977 0.92290 0.92361 0.92203 0.92255 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.42 37.16 0.35 -2.81 16 2 C 0.12 2.62 4.97 -4.04 -0.02 2.60 16 3 N -0.43 -10.79 2.63 -114.82 -0.30 -11.09 16 4 C -0.30 -8.01 9.52 -14.93 -0.14 -8.16 16 5 H 0.11 2.97 7.22 -52.49 -0.38 2.59 16 6 C 0.02 0.62 5.22 -17.47 -0.09 0.53 16 7 N -0.87 -21.72 7.56 55.50 0.42 -21.30 16 8 Si 0.93 20.18 29.58 -169.99 -5.03 15.15 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 10 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 12 C 0.44 10.20 6.27 -10.98 -0.07 10.13 16 13 O -0.59 -15.15 14.55 5.55 0.08 -15.07 16 14 C 0.14 2.62 1.48 -69.08 -0.10 2.52 16 15 H 0.10 2.18 5.11 -51.93 -0.27 1.91 16 16 N -0.70 -11.64 4.22 -54.93 -0.23 -11.87 16 17 C 0.51 7.97 6.60 -10.99 -0.07 7.89 16 18 C -0.17 -1.81 10.39 36.01 0.37 -1.44 16 19 O -0.55 -10.49 14.89 5.55 0.08 -10.41 16 20 C -0.09 -1.59 2.58 -89.50 -0.23 -1.82 16 21 C -0.12 -1.89 6.16 -25.07 -0.15 -2.05 16 22 C -0.12 -1.59 6.91 -24.74 -0.17 -1.76 16 23 C -0.12 -1.56 6.83 -25.07 -0.17 -1.73 16 24 C -0.12 -1.94 5.76 -25.61 -0.15 -2.09 16 25 H 0.10 2.35 6.07 -51.93 -0.32 2.04 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.02 0.38 7.30 -51.92 -0.38 0.00 16 28 H 0.11 2.70 5.84 -51.93 -0.30 2.40 16 29 H 0.03 0.64 5.22 -51.93 -0.27 0.37 16 30 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 31 H 0.41 6.42 7.26 -40.82 -0.30 6.12 16 32 H 0.07 0.66 7.92 -51.93 -0.41 0.25 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.40 6.95 -51.93 -0.36 1.04 16 36 H 0.08 1.36 4.12 -51.93 -0.21 1.14 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.08 1.43 5.53 -51.93 -0.29 1.14 16 LS Contribution 326.97 15.07 4.93 4.93 Total: -1.00 -29.17 326.97 -7.12 -36.29 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.42 Total: 11.54 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -0.65 Total: 1.83 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: -0.11 Total: -44.26 kcal Atomic # 8 Polarization: -25.64 SS G_CDS: 0.16 Total: -25.48 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.15 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.17 -7.12 -36.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068915935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.351 kcal (2) G-P(sol) polarization free energy of solvation -29.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds