Wall clock time and date at job start Tue Mar 31 2020 06:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47138 * 2 1 4 4 C 1.37103 * 120.00085 * 273.81294 * 3 2 1 5 5 H 1.07991 * 120.00073 * 182.84029 * 4 3 2 6 6 C 1.38955 * 119.99546 * 3.10893 * 4 3 2 7 7 N 1.31407 * 120.00254 * 15.69765 * 6 4 3 8 8 Si 1.86799 * 119.99622 * 195.69345 * 6 4 3 9 9 H 1.48503 * 109.47101 * 90.00765 * 8 6 4 10 10 H 1.48507 * 109.47326 * 210.00199 * 8 6 4 11 11 H 1.48500 * 109.47663 * 330.00311 * 8 6 4 12 12 C 1.34774 * 120.00336 * 93.81333 * 3 2 1 13 13 O 1.21287 * 120.00181 * 174.90684 * 12 3 2 14 14 C 1.50708 * 119.99680 * 354.90632 * 12 3 2 15 15 H 1.08999 * 109.47157 * 328.59544 * 14 12 3 16 16 N 1.46505 * 109.46787 * 208.59788 * 14 12 3 17 17 C 1.34767 * 119.99857 * 144.71182 * 16 14 12 18 18 C 1.50701 * 120.00155 * 183.72295 * 17 16 14 19 19 O 1.21289 * 120.00054 * 3.71994 * 17 16 14 20 20 C 1.52993 * 109.46750 * 88.59568 * 14 12 3 21 21 C 1.54275 * 110.02744 * 179.26937 * 20 14 12 22 22 C 1.54889 * 104.19159 * 217.10521 * 21 20 14 23 23 C 1.54891 * 102.75468 * 37.94631 * 22 21 20 24 24 C 1.53877 * 110.03520 * 62.10621 * 20 14 12 25 25 H 1.08997 * 109.47377 * 60.36751 * 1 2 3 26 26 H 1.08996 * 109.47561 * 180.37321 * 1 2 3 27 27 H 1.09009 * 109.47227 * 300.37052 * 1 2 3 28 28 H 1.08995 * 109.46791 * 240.00312 * 2 1 3 29 29 H 1.08995 * 109.47144 * 120.00123 * 2 1 3 30 30 H 0.97003 * 120.00376 * 179.97438 * 7 6 4 31 31 H 0.96998 * 119.99936 * 324.70155 * 16 14 12 32 32 H 1.08995 * 109.46997 * 359.97438 * 18 17 16 33 33 H 1.09004 * 109.47063 * 119.99779 * 18 17 16 34 34 H 1.09006 * 109.47031 * 239.99679 * 18 17 16 35 35 H 1.09001 * 110.02254 * 300.70958 * 20 14 12 36 36 H 1.08998 * 110.48844 * 335.77878 * 21 20 14 37 37 H 1.08999 * 110.48654 * 98.43031 * 21 20 14 38 38 H 1.08999 * 110.75977 * 279.62542 * 22 21 20 39 39 H 1.09004 * 110.75786 * 156.25860 * 22 21 20 40 40 H 1.08999 * 110.48798 * 203.37870 * 23 22 21 41 41 H 1.08999 * 110.60055 * 80.78581 * 23 22 21 42 42 H 1.08997 * 110.03163 * 238.56445 * 24 20 14 43 43 H 1.09003 * 110.02963 * 359.94488 * 24 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1724 2.0539 -1.1847 5 1 2.5756 3.0557 -1.1884 6 6 1.8045 1.4486 -2.3802 7 7 1.0371 0.3819 -2.3677 8 14 2.4008 2.1512 -4.0050 9 1 3.6945 1.5210 -4.3718 10 1 1.3968 1.8725 -5.0632 11 1 2.5852 3.6187 -3.8719 12 6 2.3161 1.9907 1.1646 13 8 2.8071 3.0998 1.1604 14 6 2.0391 1.2942 2.4720 15 1 1.1659 0.6509 2.3631 16 7 1.7831 2.2930 3.5127 17 6 0.8807 2.0407 4.4814 18 6 0.5558 3.0999 5.5030 19 8 0.3299 0.9612 4.5309 20 6 3.2509 0.4469 2.8651 21 6 2.9881 -0.2580 4.2119 22 6 4.3603 -0.2291 4.9298 23 6 4.9208 1.1612 4.5400 24 6 4.4797 1.3493 3.0737 25 1 -0.3634 0.5081 -0.8932 26 1 -0.3634 -1.0276 0.0067 27 1 -0.3634 0.5196 0.8867 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.7799 -0.0404 -3.2022 31 1 2.2632 3.1358 3.5047 32 1 1.1445 3.9942 5.2989 33 1 -0.5054 3.3430 5.4494 34 1 0.7937 2.7284 6.4998 35 1 3.4571 -0.2915 2.0903 36 1 2.2435 0.2892 4.7901 37 1 2.6651 -1.2861 4.0478 38 1 5.0071 -1.0242 4.5591 39 1 4.2330 -0.3052 6.0097 40 1 6.0082 1.1690 4.6152 41 1 4.4902 1.9390 5.1707 42 1 5.2825 1.0483 2.4008 43 1 4.2129 2.3908 2.8939 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068915935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:48 Heat of formation + Delta-G solvation = -85.187011 kcal Electronic energy + Delta-G solvation = -24271.906814 eV Core-core repulsion = 20930.545618 eV Total energy + Delta-G solvation = -3341.361196 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.74891 -39.99992 -38.58459 -37.14096 -35.19597 -33.78504 -31.92116 -31.25171 -29.70631 -29.55162 -27.54553 -25.68124 -23.90655 -21.92476 -21.58064 -21.11861 -20.17144 -18.86009 -18.36543 -17.44505 -17.33238 -17.09465 -16.26286 -16.02982 -15.82492 -15.50371 -15.12727 -14.69184 -14.67070 -14.26568 -14.04015 -13.82057 -13.61116 -13.26979 -13.08279 -12.90529 -12.87563 -12.61974 -12.30106 -12.14252 -12.12372 -11.94650 -11.90225 -11.87605 -11.77252 -11.43872 -11.36663 -10.89170 -10.81518 -10.48665 -9.89170 -9.73401 -8.23926 -5.86701 1.35323 1.43061 1.53507 1.64206 1.91655 2.20504 2.38718 3.01655 3.13211 3.62984 3.73523 3.77206 3.96416 4.01929 4.30527 4.37785 4.43004 4.52416 4.59009 4.64022 4.69544 4.71546 4.81885 4.85578 4.87180 4.91059 5.01239 5.09277 5.10403 5.11641 5.24913 5.38261 5.39652 5.43018 5.48262 5.52136 5.54875 5.89794 6.04413 6.49984 6.63052 7.15355 7.26852 7.47702 7.98749 8.65438 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020497 B = 0.005736 C = 0.005394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.711354 B = 4880.060759 C = 5189.992579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.121 3.879 3 N -0.448 5.448 4 C -0.339 4.339 5 H 0.079 0.921 6 C -0.002 4.002 7 N -0.875 5.875 8 Si 0.989 3.011 9 H -0.272 1.272 10 H -0.273 1.273 11 H -0.278 1.278 12 C 0.432 3.568 13 O -0.622 6.622 14 C 0.150 3.850 15 H 0.086 0.914 16 N -0.698 5.698 17 C 0.504 3.496 18 C -0.161 4.161 19 O -0.587 6.587 20 C -0.093 4.093 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.111 4.111 24 C -0.120 4.120 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.012 0.988 28 H 0.096 0.904 29 H 0.051 0.949 30 H 0.272 0.728 31 H 0.411 0.589 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.050 0.950 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.154 -0.613 12.785 13.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.001 4.001 3 N -0.165 5.165 4 C -0.467 4.467 5 H 0.097 0.903 6 C -0.203 4.203 7 N -0.514 5.514 8 Si 0.813 3.187 9 H -0.197 1.197 10 H -0.198 1.198 11 H -0.203 1.203 12 C 0.220 3.780 13 O -0.510 6.510 14 C 0.040 3.960 15 H 0.104 0.896 16 N -0.351 5.351 17 C 0.294 3.706 18 C -0.220 4.220 19 O -0.469 6.469 20 C -0.113 4.113 21 C -0.158 4.158 22 C -0.153 4.153 23 C -0.149 4.149 24 C -0.157 4.157 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.031 0.969 28 H 0.114 0.886 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.248 0.752 32 H 0.115 0.885 33 H 0.121 0.879 34 H 0.131 0.869 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.886 -0.971 12.616 12.979 hybrid contribution 0.174 0.584 -1.383 1.511 sum 3.060 -0.387 11.234 11.649 Atomic orbital electron populations 1.22000 0.96050 1.00711 1.00068 1.21723 0.95183 0.82255 1.00980 1.44003 1.54986 1.12605 1.04940 1.19708 1.42147 1.00774 0.84040 0.90319 1.25923 0.95382 0.97133 1.01908 1.70245 1.31461 1.21558 1.28178 0.85003 0.78256 0.78215 0.77239 1.19723 1.19818 1.20275 1.20518 0.84776 0.87024 0.85673 1.90432 1.50561 1.22468 1.87500 1.20544 0.99548 0.90287 0.85588 0.89585 1.45892 1.42345 1.20547 1.26302 1.21633 0.77254 0.89484 0.82269 1.21872 1.05074 0.97152 0.97895 1.90677 1.53347 1.27336 1.75491 1.22081 0.93813 0.96570 0.98838 1.22545 0.98759 0.99854 0.94632 1.22470 0.95266 0.97272 1.00301 1.22292 1.00798 0.97442 0.94343 1.22150 0.95950 0.99690 0.97959 0.91134 0.92239 0.96872 0.88578 0.93068 0.91751 0.75234 0.88546 0.87925 0.86890 0.91489 0.90705 0.92261 0.91118 0.90267 0.90596 0.91201 0.93080 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.82 9.42 71.98 0.68 -5.14 16 2 C 0.12 5.60 4.97 86.38 0.43 6.03 16 3 N -0.45 -23.07 2.63 -635.55 -1.67 -24.74 16 4 C -0.34 -18.88 9.52 84.04 0.80 -18.08 16 5 H 0.08 4.69 7.22 -2.92 -0.02 4.67 16 6 C 0.00 -0.10 5.22 84.93 0.44 0.34 16 7 N -0.87 -43.85 7.56 21.66 0.16 -43.69 16 8 Si 0.99 41.66 29.58 68.60 2.03 43.69 16 9 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 10 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 C 0.43 20.83 6.27 87.66 0.55 21.38 16 13 O -0.62 -32.84 14.55 -3.05 -0.04 -32.89 16 14 C 0.15 5.84 1.48 44.24 0.07 5.91 16 15 H 0.09 3.68 5.11 -2.39 -0.01 3.67 16 16 N -0.70 -23.07 4.22 -446.09 -1.88 -24.95 16 17 C 0.50 15.21 6.60 87.66 0.58 15.79 16 18 C -0.16 -2.99 10.39 71.24 0.74 -2.25 16 19 O -0.59 -21.94 14.89 -3.06 -0.05 -21.98 16 20 C -0.09 -3.15 2.58 -10.07 -0.03 -3.18 16 21 C -0.12 -3.51 6.16 31.67 0.19 -3.31 16 22 C -0.12 -2.64 6.91 31.89 0.22 -2.42 16 23 C -0.11 -2.63 6.83 31.67 0.22 -2.41 16 24 C -0.12 -3.78 5.76 31.32 0.18 -3.60 16 25 H 0.07 3.52 6.07 -2.39 -0.01 3.51 16 26 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.01 0.56 7.30 -2.38 -0.02 0.54 16 28 H 0.10 4.73 5.84 -2.39 -0.01 4.72 16 29 H 0.05 2.12 5.22 -2.39 -0.01 2.11 16 30 H 0.27 12.80 8.31 -92.71 -0.77 12.03 16 31 H 0.41 12.86 7.26 -92.71 -0.67 12.19 16 32 H 0.10 1.40 7.92 -2.39 -0.02 1.38 16 33 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.11 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.07 2.40 6.95 -2.39 -0.02 2.38 16 36 H 0.07 2.34 4.12 -2.39 -0.01 2.33 16 37 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 2.16 5.53 -2.39 -0.01 2.15 16 Total: -1.00 -64.68 326.97 3.97 -60.70 By element: Atomic # 1 Polarization: 34.45 SS G_CDS: 0.35 Total: 34.80 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 5.07 Total: 9.05 kcal Atomic # 7 Polarization: -89.98 SS G_CDS: -3.39 Total: -93.37 kcal Atomic # 8 Polarization: -54.78 SS G_CDS: -0.09 Total: -54.87 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -64.68 3.97 -60.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068915935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.483 kcal (2) G-P(sol) polarization free energy of solvation -64.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds