Wall clock time and date at job start Tue Mar 31 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47162 * 2 1 4 4 C 1.37092 * 120.00382 * 89.20191 * 3 2 1 5 5 H 1.07998 * 120.00367 * 214.79134 * 4 3 2 6 6 C 1.38954 * 119.99862 * 34.78549 * 4 3 2 7 7 N 1.31412 * 119.99656 * 22.18571 * 6 4 3 8 8 Si 1.86794 * 120.00005 * 202.17960 * 6 4 3 9 9 H 1.48500 * 109.47172 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47174 * 120.00280 * 8 6 4 11 11 H 1.48501 * 109.47206 * 240.00312 * 8 6 4 12 12 C 1.34779 * 119.99550 * 269.20201 * 3 2 1 13 13 O 1.21294 * 119.99677 * 184.58533 * 12 3 2 14 14 C 1.50700 * 120.00140 * 4.59163 * 12 3 2 15 15 H 1.09001 * 109.47273 * 11.45976 * 14 12 3 16 16 N 1.46505 * 109.47184 * 131.45572 * 14 12 3 17 17 C 1.34777 * 119.99636 * 64.90288 * 16 14 12 18 18 C 1.50697 * 119.99897 * 184.50616 * 17 16 14 19 19 O 1.21285 * 119.99953 * 4.50167 * 17 16 14 20 20 C 1.52998 * 109.47173 * 251.45876 * 14 12 3 21 21 C 1.54261 * 110.03396 * 173.91001 * 20 14 12 22 22 C 1.54887 * 104.19536 * 217.10670 * 21 20 14 23 23 C 1.54884 * 102.75187 * 37.93858 * 22 21 20 24 24 C 1.53876 * 110.03346 * 56.74162 * 20 14 12 25 25 H 1.09001 * 109.47177 * 65.90582 * 1 2 3 26 26 H 1.08994 * 109.47128 * 185.91395 * 1 2 3 27 27 H 1.09004 * 109.46767 * 305.90999 * 1 2 3 28 28 H 1.08999 * 109.47007 * 239.99921 * 2 1 3 29 29 H 1.09001 * 109.46828 * 119.99463 * 2 1 3 30 30 H 0.97002 * 119.99835 * 180.02562 * 7 6 4 31 31 H 0.96995 * 120.00198 * 245.18216 * 16 14 12 32 32 H 1.08994 * 109.47463 * 0.02562 * 18 17 16 33 33 H 1.09001 * 109.47207 * 120.00182 * 18 17 16 34 34 H 1.09000 * 109.47120 * 239.99628 * 18 17 16 35 35 H 1.09004 * 110.01166 * 295.35168 * 20 14 12 36 36 H 1.09001 * 110.48926 * 335.78461 * 21 20 14 37 37 H 1.08999 * 110.49046 * 98.42619 * 21 20 14 38 38 H 1.09001 * 110.75423 * 279.62038 * 22 21 20 39 39 H 1.08999 * 110.91488 * 156.33439 * 22 21 20 40 40 H 1.08992 * 110.48880 * 203.37882 * 23 22 21 41 41 H 1.09008 * 110.59290 * 80.79123 * 23 22 21 42 42 H 1.08998 * 110.03233 * 238.57689 * 24 20 14 43 43 H 1.09001 * 110.03060 * 359.97438 * 24 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2313 2.0331 1.1871 5 1 2.0389 3.0931 1.2633 6 6 2.6946 1.3299 2.2924 7 7 3.3327 0.1930 2.1276 8 14 2.4107 2.0009 4.0124 9 1 1.6729 3.2868 3.9266 10 1 1.6140 1.0253 4.7991 11 1 3.7188 2.2237 4.6791 12 6 2.2583 2.0111 -1.1672 13 8 2.7409 3.1239 -1.1677 14 6 1.9269 1.3328 -2.4715 15 1 1.3249 0.4453 -2.2768 16 7 1.1742 2.2559 -3.3245 17 6 1.7588 3.3821 -3.7789 18 6 0.9556 4.3810 -4.5713 19 8 2.9313 3.5916 -3.5500 20 6 3.2216 0.9260 -3.1781 21 6 2.8979 0.0970 -4.4381 22 6 4.0182 -0.9713 -4.4881 23 6 4.2183 -1.3271 -2.9940 24 6 4.0611 0.0205 -2.2599 25 1 -0.3633 0.4195 -0.9381 26 1 -0.3633 -1.0221 0.1059 27 1 -0.3633 0.6028 0.8324 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.6558 -0.2981 2.8992 31 1 0.2540 2.0586 -3.5590 32 1 -0.0691 4.0239 -4.6739 33 1 0.9555 5.3401 -4.0532 34 1 1.3993 4.5020 -5.5595 35 1 3.7926 1.8136 -3.4507 36 1 1.9217 -0.3783 -4.3417 37 1 2.9307 0.7261 -5.3276 38 1 4.9317 -0.5535 -4.9114 39 1 3.6970 -1.8459 -5.0538 40 1 5.2146 -1.7371 -2.8295 41 1 3.4567 -2.0331 -2.6626 42 1 5.0398 0.4683 -2.0875 43 1 3.5464 -0.1287 -1.3107 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068915938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:51 Heat of formation + Delta-G solvation = -70.762144 kcal Electronic energy + Delta-G solvation = -24458.285662 eV Core-core repulsion = 21117.549975 eV Total energy + Delta-G solvation = -3340.735686 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.07475 -38.00006 -37.11435 -34.88411 -33.83160 -31.96978 -30.53406 -29.40749 -28.53688 -28.13390 -25.73056 -23.96650 -22.15945 -20.76303 -20.11547 -19.80801 -18.05222 -17.16902 -16.61934 -15.81010 -15.65941 -15.16713 -14.98427 -14.42457 -14.20584 -13.84298 -13.35223 -13.05960 -12.96413 -12.86861 -12.74168 -12.36684 -11.94983 -11.77279 -11.66393 -11.54694 -11.06483 -10.99802 -10.78411 -10.73942 -10.60685 -10.54170 -10.42812 -10.33096 -10.26834 -10.12600 -9.84384 -9.12808 -8.96406 -8.74269 -7.79696 -7.38240 -6.25368 -3.87715 3.15654 3.23213 3.29192 3.35657 3.57785 4.10824 4.27844 4.82930 5.00339 5.01554 5.05330 5.21270 5.27514 5.36707 5.59403 5.61942 5.73072 5.77873 5.84786 5.91620 5.93518 5.98121 6.05649 6.10924 6.15676 6.21810 6.24650 6.32825 6.37366 6.46139 6.49368 6.69113 6.87921 6.91185 6.95303 7.12692 7.30467 7.65612 8.01144 8.32041 8.60066 8.86779 9.30410 9.49563 10.13733 10.76743 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.006954 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.223735 B = 4025.533401 C = 4882.163812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.085 3.915 3 N -0.444 5.444 4 C -0.300 4.300 5 H 0.088 0.912 6 C 0.035 3.965 7 N -0.868 5.868 8 Si 0.913 3.087 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.282 1.282 12 C 0.450 3.550 13 O -0.548 6.548 14 C 0.139 3.861 15 H 0.092 0.908 16 N -0.723 5.723 17 C 0.505 3.495 18 C -0.168 4.168 19 O -0.503 6.503 20 C -0.101 4.101 21 C -0.111 4.111 22 C -0.124 4.124 23 C -0.121 4.121 24 C -0.129 4.129 25 H 0.037 0.963 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.052 0.948 29 H 0.115 0.885 30 H 0.266 0.734 31 H 0.394 0.606 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.540 -4.196 -11.626 13.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.039 4.039 3 N -0.166 5.166 4 C -0.428 4.428 5 H 0.106 0.894 6 C -0.168 4.168 7 N -0.507 5.507 8 Si 0.740 3.260 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.209 1.209 12 C 0.236 3.764 13 O -0.428 6.428 14 C 0.031 3.969 15 H 0.110 0.890 16 N -0.377 5.377 17 C 0.291 3.709 18 C -0.228 4.228 19 O -0.377 6.377 20 C -0.120 4.120 21 C -0.148 4.148 22 C -0.161 4.161 23 C -0.159 4.159 24 C -0.167 4.167 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.133 0.867 30 H 0.076 0.924 31 H 0.227 0.773 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.125 0.875 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.333 -3.569 -11.311 13.005 hybrid contribution -0.703 -0.010 0.886 1.131 sum -6.036 -3.578 -10.426 12.567 Atomic orbital electron populations 1.22203 0.98396 1.00422 1.01127 1.21750 0.91872 0.86148 1.04131 1.43585 1.56836 1.11808 1.04345 1.19426 1.42488 0.95067 0.85843 0.89424 1.25290 0.94767 0.96673 1.00113 1.69889 1.33505 1.16488 1.30841 0.86076 0.78216 0.79115 0.82558 1.19359 1.20704 1.20862 1.20541 0.82669 0.88352 0.84794 1.90609 1.45267 1.20452 1.86467 1.21238 0.94140 0.91583 0.89960 0.89038 1.45810 1.15931 1.23345 1.52579 1.20554 0.88411 0.81983 0.79924 1.21826 1.00061 0.99729 1.01173 1.90710 1.16370 1.75085 1.55500 1.22132 0.95601 1.00010 0.94271 1.22345 0.98164 0.96715 0.97603 1.22481 0.98718 0.98090 0.96825 1.22336 1.01092 0.97678 0.94751 1.22319 1.00673 0.94035 0.99627 0.94405 0.93223 0.92189 0.92992 0.86707 0.92430 0.77310 0.91285 0.89191 0.89542 0.87534 0.92171 0.92453 0.91892 0.92190 0.92155 0.91919 0.92032 0.89480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.09 37.16 0.37 -2.49 16 2 C 0.09 1.80 4.57 -4.04 -0.02 1.78 16 3 N -0.44 -11.13 2.36 -114.81 -0.27 -11.40 16 4 C -0.30 -8.38 8.93 -14.93 -0.13 -8.52 16 5 H 0.09 2.61 7.77 -52.49 -0.41 2.20 16 6 C 0.04 0.93 4.97 -17.47 -0.09 0.85 16 7 N -0.87 -23.25 11.30 55.50 0.63 -22.62 16 8 Si 0.91 20.84 29.61 -169.99 -5.03 15.80 16 9 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.45 11.13 5.60 -10.98 -0.06 11.07 16 13 O -0.55 -16.09 14.05 -17.25 -0.24 -16.33 16 14 C 0.14 2.62 2.04 -69.08 -0.14 2.47 16 15 H 0.09 1.54 4.99 -51.93 -0.26 1.28 16 16 N -0.72 -11.55 5.03 -54.93 -0.28 -11.83 16 17 C 0.51 8.91 7.02 -10.99 -0.08 8.83 16 18 C -0.17 -2.02 10.39 36.00 0.37 -1.64 16 19 O -0.50 -11.53 12.59 -17.24 -0.22 -11.75 16 20 C -0.10 -1.85 2.29 -89.50 -0.20 -2.06 16 21 C -0.11 -1.57 6.15 -25.08 -0.15 -1.73 16 22 C -0.12 -1.62 6.91 -24.74 -0.17 -1.79 16 23 C -0.12 -1.79 6.83 -25.08 -0.17 -1.96 16 24 C -0.13 -2.44 5.90 -25.62 -0.15 -2.59 16 25 H 0.04 0.59 7.46 -51.93 -0.39 0.21 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.05 1.00 4.63 -51.93 -0.24 0.76 16 29 H 0.12 2.72 5.34 -51.93 -0.28 2.44 16 30 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 31 H 0.39 4.64 8.67 -40.82 -0.35 4.28 16 32 H 0.07 0.61 7.92 -51.93 -0.41 0.20 16 33 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.11 2.34 5.59 -51.93 -0.29 2.05 16 36 H 0.06 0.77 7.79 -51.93 -0.40 0.36 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.06 0.87 8.14 -51.92 -0.42 0.45 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.09 1.86 4.22 -51.93 -0.22 1.64 16 LS Contribution 332.06 15.07 5.00 5.00 Total: -1.00 -34.18 332.06 -7.64 -41.82 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -6.61 Total: 9.07 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -0.62 Total: 2.22 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.08 Total: -45.85 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.46 Total: -28.08 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.18 -7.64 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068915938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.937 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds