Wall clock time and date at job start Tue Mar 31 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46503 * 109.47162 * 2 1 4 4 C 1.37092 * 120.00382 * 89.20191 * 3 2 1 5 5 H 1.07998 * 120.00367 * 214.79134 * 4 3 2 6 6 C 1.38954 * 119.99862 * 34.78549 * 4 3 2 7 7 N 1.31412 * 119.99656 * 22.18571 * 6 4 3 8 8 Si 1.86794 * 120.00005 * 202.17960 * 6 4 3 9 9 H 1.48500 * 109.47172 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47174 * 120.00280 * 8 6 4 11 11 H 1.48501 * 109.47206 * 240.00312 * 8 6 4 12 12 C 1.34779 * 119.99550 * 269.20201 * 3 2 1 13 13 O 1.21294 * 119.99677 * 184.58533 * 12 3 2 14 14 C 1.50700 * 120.00140 * 4.59163 * 12 3 2 15 15 H 1.09001 * 109.47273 * 11.45976 * 14 12 3 16 16 N 1.46505 * 109.47184 * 131.45572 * 14 12 3 17 17 C 1.34777 * 119.99636 * 64.90288 * 16 14 12 18 18 C 1.50697 * 119.99897 * 184.50616 * 17 16 14 19 19 O 1.21285 * 119.99953 * 4.50167 * 17 16 14 20 20 C 1.52998 * 109.47173 * 251.45876 * 14 12 3 21 21 C 1.54261 * 110.03396 * 173.91001 * 20 14 12 22 22 C 1.54887 * 104.19536 * 217.10670 * 21 20 14 23 23 C 1.54884 * 102.75187 * 37.93858 * 22 21 20 24 24 C 1.53876 * 110.03346 * 56.74162 * 20 14 12 25 25 H 1.09001 * 109.47177 * 65.90582 * 1 2 3 26 26 H 1.08994 * 109.47128 * 185.91395 * 1 2 3 27 27 H 1.09004 * 109.46767 * 305.90999 * 1 2 3 28 28 H 1.08999 * 109.47007 * 239.99921 * 2 1 3 29 29 H 1.09001 * 109.46828 * 119.99463 * 2 1 3 30 30 H 0.97002 * 119.99835 * 180.02562 * 7 6 4 31 31 H 0.96995 * 120.00198 * 245.18216 * 16 14 12 32 32 H 1.08994 * 109.47463 * 0.02562 * 18 17 16 33 33 H 1.09001 * 109.47207 * 120.00182 * 18 17 16 34 34 H 1.09000 * 109.47120 * 239.99628 * 18 17 16 35 35 H 1.09004 * 110.01166 * 295.35168 * 20 14 12 36 36 H 1.09001 * 110.48926 * 335.78461 * 21 20 14 37 37 H 1.08999 * 110.49046 * 98.42619 * 21 20 14 38 38 H 1.09001 * 110.75423 * 279.62038 * 22 21 20 39 39 H 1.08999 * 110.91488 * 156.33439 * 22 21 20 40 40 H 1.08992 * 110.48880 * 203.37882 * 23 22 21 41 41 H 1.09008 * 110.59290 * 80.79123 * 23 22 21 42 42 H 1.08998 * 110.03233 * 238.57689 * 24 20 14 43 43 H 1.09001 * 110.03060 * 359.97438 * 24 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2313 2.0331 1.1871 5 1 2.0389 3.0931 1.2633 6 6 2.6946 1.3299 2.2924 7 7 3.3327 0.1930 2.1276 8 14 2.4107 2.0009 4.0124 9 1 1.6729 3.2868 3.9266 10 1 1.6140 1.0253 4.7991 11 1 3.7188 2.2237 4.6791 12 6 2.2583 2.0111 -1.1672 13 8 2.7409 3.1239 -1.1677 14 6 1.9269 1.3328 -2.4715 15 1 1.3249 0.4453 -2.2768 16 7 1.1742 2.2559 -3.3245 17 6 1.7588 3.3821 -3.7789 18 6 0.9556 4.3810 -4.5713 19 8 2.9313 3.5916 -3.5500 20 6 3.2216 0.9260 -3.1781 21 6 2.8979 0.0970 -4.4381 22 6 4.0182 -0.9713 -4.4881 23 6 4.2183 -1.3271 -2.9940 24 6 4.0611 0.0205 -2.2599 25 1 -0.3633 0.4195 -0.9381 26 1 -0.3633 -1.0221 0.1059 27 1 -0.3633 0.6028 0.8324 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 3.6558 -0.2981 2.8992 31 1 0.2540 2.0586 -3.5590 32 1 -0.0691 4.0239 -4.6739 33 1 0.9555 5.3401 -4.0532 34 1 1.3993 4.5020 -5.5595 35 1 3.7926 1.8136 -3.4507 36 1 1.9217 -0.3783 -4.3417 37 1 2.9307 0.7261 -5.3276 38 1 4.9317 -0.5535 -4.9114 39 1 3.6970 -1.8459 -5.0538 40 1 5.2146 -1.7371 -2.8295 41 1 3.4567 -2.0331 -2.6626 42 1 5.0398 0.4683 -2.0875 43 1 3.5464 -0.1287 -1.3107 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068915938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:51 Heat of formation + Delta-G solvation = -93.831712 kcal Electronic energy + Delta-G solvation = -24459.286033 eV Core-core repulsion = 21117.549975 eV Total energy + Delta-G solvation = -3341.736058 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.63862 -39.63824 -38.55690 -36.82389 -35.34085 -33.94149 -31.84552 -31.12335 -29.78042 -29.34396 -27.53480 -25.62749 -23.81781 -22.13930 -21.52680 -21.22971 -19.69943 -18.73999 -18.46707 -17.35230 -17.19441 -16.97794 -16.35677 -16.09353 -15.56057 -15.39943 -14.97881 -14.59485 -14.57513 -14.35185 -14.15332 -13.59664 -13.47182 -13.37906 -13.12025 -12.94779 -12.84791 -12.66754 -12.28781 -12.13729 -12.08049 -12.01006 -11.89701 -11.88037 -11.73380 -11.56308 -11.39290 -10.92136 -10.74870 -10.25715 -9.57320 -9.38466 -8.29388 -6.00874 1.32995 1.38674 1.51680 1.80847 2.06208 2.28801 2.57192 3.03975 3.15544 3.71404 3.76694 3.81395 4.08694 4.15275 4.19705 4.33414 4.44162 4.55170 4.55935 4.66078 4.70516 4.71317 4.78442 4.83219 4.86201 4.95531 5.01669 5.08455 5.11692 5.14982 5.27582 5.36544 5.42387 5.46367 5.48810 5.52894 5.62895 5.67867 6.23167 6.60198 6.79084 7.25797 7.53870 7.59312 8.18714 8.70070 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.006954 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.223735 B = 4025.533401 C = 4882.163812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.084 3.916 3 N -0.452 5.452 4 C -0.337 4.337 5 H 0.053 0.947 6 C 0.005 3.995 7 N -0.884 5.884 8 Si 0.975 3.025 9 H -0.275 1.275 10 H -0.259 1.259 11 H -0.282 1.282 12 C 0.437 3.563 13 O -0.609 6.609 14 C 0.152 3.848 15 H 0.119 0.881 16 N -0.710 5.710 17 C 0.492 3.508 18 C -0.156 4.156 19 O -0.565 6.565 20 C -0.099 4.099 21 C -0.099 4.099 22 C -0.116 4.116 23 C -0.114 4.114 24 C -0.132 4.132 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.272 0.728 31 H 0.418 0.582 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.024 0.976 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.956 -6.460 -13.227 17.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.039 4.039 3 N -0.172 5.172 4 C -0.465 4.465 5 H 0.071 0.929 6 C -0.198 4.198 7 N -0.522 5.522 8 Si 0.799 3.201 9 H -0.200 1.200 10 H -0.184 1.184 11 H -0.208 1.208 12 C 0.225 3.775 13 O -0.493 6.493 14 C 0.043 3.957 15 H 0.137 0.863 16 N -0.365 5.365 17 C 0.280 3.720 18 C -0.216 4.216 19 O -0.443 6.443 20 C -0.119 4.119 21 C -0.137 4.137 22 C -0.153 4.153 23 C -0.151 4.151 24 C -0.170 4.170 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.256 0.744 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.124 0.876 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.043 0.957 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.816 -5.892 -12.928 16.215 hybrid contribution 0.126 0.721 1.432 1.608 sum -7.690 -5.171 -11.496 14.766 Atomic orbital electron populations 1.22111 0.95193 1.02445 1.01462 1.21856 0.94433 0.83796 1.03828 1.43836 1.56587 1.13033 1.03792 1.19291 1.44847 0.94236 0.88140 0.92892 1.25975 0.93850 0.96897 1.03058 1.69964 1.33090 1.17029 1.32077 0.85174 0.78077 0.78647 0.78195 1.20019 1.18371 1.20842 1.21603 0.81435 0.87787 0.86658 1.90566 1.47845 1.23243 1.87611 1.21025 0.95294 0.92077 0.87293 0.86291 1.45706 1.16882 1.22659 1.51252 1.21653 0.88137 0.82706 0.79471 1.21819 1.01463 0.97509 1.00785 1.90705 1.19390 1.76306 1.57851 1.22047 0.94704 0.98947 0.96175 1.22302 0.99929 0.96390 0.95055 1.22472 0.98270 0.98928 0.95629 1.22320 1.02102 0.95163 0.95538 1.22299 0.98516 0.96848 0.99379 0.92241 0.89710 0.94260 0.91008 0.89219 0.91801 0.74423 0.87216 0.89802 0.87578 0.91783 0.89426 0.91849 0.92350 0.88635 0.91700 0.90076 0.95726 0.92119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.07 10.09 71.98 0.73 -4.35 16 2 C 0.08 3.52 4.57 86.38 0.39 3.91 16 3 N -0.45 -23.43 2.36 -635.52 -1.50 -24.92 16 4 C -0.34 -19.75 8.93 84.04 0.75 -19.00 16 5 H 0.05 3.40 7.77 -2.91 -0.02 3.38 16 6 C 0.00 0.26 4.97 84.93 0.42 0.68 16 7 N -0.88 -48.20 11.30 21.66 0.24 -47.96 16 8 Si 0.97 43.59 29.61 68.60 2.03 45.62 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 C 0.44 22.48 5.60 87.66 0.49 22.97 16 13 O -0.61 -38.16 14.05 18.72 0.26 -37.89 16 14 C 0.15 5.65 2.04 44.24 0.09 5.74 16 15 H 0.12 3.70 4.99 -2.39 -0.01 3.69 16 16 N -0.71 -21.61 5.03 -446.09 -2.24 -23.85 16 17 C 0.49 17.25 7.02 87.66 0.62 17.86 16 18 C -0.16 -3.42 10.39 71.23 0.74 -2.68 16 19 O -0.57 -27.18 12.59 18.75 0.24 -26.94 16 20 C -0.10 -3.66 2.29 -10.07 -0.02 -3.68 16 21 C -0.10 -2.53 6.15 31.67 0.19 -2.33 16 22 C -0.12 -2.66 6.91 31.88 0.22 -2.44 16 23 C -0.11 -3.16 6.83 31.67 0.22 -2.94 16 24 C -0.13 -5.15 5.90 31.32 0.18 -4.97 16 25 H 0.06 1.68 7.46 -2.39 -0.02 1.66 16 26 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.07 2.67 4.63 -2.39 -0.01 2.66 16 29 H 0.09 4.27 5.34 -2.39 -0.01 4.26 16 30 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 31 H 0.42 8.39 8.67 -92.71 -0.80 7.59 16 32 H 0.11 1.48 7.92 -2.39 -0.02 1.46 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.06 2.98 5.59 -2.39 -0.01 2.97 16 36 H 0.09 1.79 7.79 -2.39 -0.02 1.77 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 2.67 4.22 -2.39 -0.01 2.66 16 Total: -1.00 -83.17 332.06 4.27 -78.90 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 0.22 Total: 28.29 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 5.02 Total: 8.77 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -3.50 Total: -96.73 kcal Atomic # 8 Polarization: -65.34 SS G_CDS: 0.50 Total: -64.84 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -83.17 4.27 -78.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068915938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.935 kcal (2) G-P(sol) polarization free energy of solvation -83.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds