Wall clock time and date at job start Tue Mar 31 2020 05:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46510 * 109.46835 * 2 1 4 4 C 1.46500 * 120.00204 * 269.99859 * 3 2 1 5 5 C 1.53001 * 109.46778 * 270.00299 * 4 3 2 6 6 C 1.34780 * 119.99650 * 89.99791 * 3 2 1 7 7 O 1.21278 * 119.99606 * 179.97438 * 6 3 2 8 8 C 1.50699 * 119.99966 * 0.02562 * 6 3 2 9 9 C 1.53004 * 109.46805 * 179.97438 * 8 6 3 10 10 C 1.50701 * 109.46862 * 179.97438 * 9 8 6 11 11 O 1.21290 * 120.00084 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99984 * 179.97438 * 10 9 8 13 13 C 1.37097 * 120.00373 * 180.02562 * 12 10 9 14 14 H 1.07997 * 119.99852 * 224.29560 * 13 12 10 15 15 C 1.38949 * 119.99918 * 44.28910 * 13 12 10 16 16 N 1.31413 * 119.99917 * 18.21196 * 15 13 12 17 17 Si 1.86800 * 120.00189 * 198.21142 * 15 13 12 18 18 H 1.48500 * 109.46908 * 90.00326 * 17 15 13 19 19 H 1.48498 * 109.47192 * 210.00185 * 17 15 13 20 20 H 1.48497 * 109.46872 * 330.00379 * 17 15 13 21 21 C 1.46504 * 119.99876 * 0.02562 * 12 10 9 22 22 C 1.52995 * 117.49718 * 183.22163 * 21 12 10 23 23 C 1.52994 * 117.50128 * 114.59933 * 21 12 10 24 24 H 1.08995 * 109.46818 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47505 * 299.99991 * 1 2 3 26 26 H 1.09000 * 109.46760 * 60.00000 * 1 2 3 27 27 H 1.08994 * 109.47297 * 240.00480 * 2 1 3 28 28 H 1.08997 * 109.47263 * 119.99969 * 2 1 3 29 29 H 1.08996 * 109.47135 * 30.00127 * 4 3 2 30 30 H 1.08997 * 109.47144 * 149.99851 * 4 3 2 31 31 H 1.08997 * 109.47649 * 59.99861 * 5 4 3 32 32 H 1.09004 * 109.46610 * 180.02562 * 5 4 3 33 33 H 1.08996 * 109.47147 * 299.99821 * 5 4 3 34 34 H 1.09000 * 109.47666 * 59.99839 * 8 6 3 35 35 H 1.08995 * 109.47038 * 299.99366 * 8 6 3 36 36 H 1.08995 * 109.47008 * 299.99633 * 9 8 6 37 37 H 1.09002 * 109.46895 * 60.00189 * 9 8 6 38 38 H 0.97001 * 120.00005 * 174.93555 * 16 15 13 39 39 H 1.09006 * 115.54901 * 328.91915 * 21 12 10 40 40 H 1.08999 * 117.50473 * 359.97438 * 22 21 12 41 41 H 1.09002 * 117.50133 * 145.01673 * 22 21 12 42 42 H 1.09004 * 117.49750 * 214.97913 * 23 21 12 43 43 H 1.08996 * 117.49782 * 359.96796 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 -1.2687 5 6 3.7075 1.8315 -1.7103 6 6 2.2428 2.0166 1.1673 7 8 2.6475 3.1599 1.1673 8 6 1.9922 1.3060 2.4723 9 6 2.3240 2.2432 3.6353 10 6 2.0728 1.5328 4.9403 11 8 1.6686 0.3892 4.9403 12 7 2.2982 2.1678 6.1076 13 6 2.0701 1.5213 7.2949 14 1 1.5582 2.0311 8.0976 15 6 2.4976 0.2103 7.4654 16 7 3.4113 -0.2922 6.6656 17 14 1.7736 -0.8381 8.8315 18 1 0.5776 -1.5565 8.3231 19 1 2.7860 -1.8237 9.2885 20 1 1.3818 0.0327 9.9688 21 6 2.7869 3.5489 6.1076 22 6 3.0952 4.1890 7.4626 23 6 1.8597 4.6264 6.6733 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5817 1.6879 -2.0283 30 1 2.0954 3.1412 -1.1384 31 1 3.8746 0.7624 -1.8406 32 1 3.8893 2.3458 -2.6540 33 1 4.3883 2.2156 -0.9506 34 1 2.6227 0.4187 2.5299 35 1 0.9444 1.0115 2.5302 36 1 3.3719 2.5374 3.5772 37 1 1.6937 3.1307 3.5779 38 1 3.7630 -1.1813 6.8291 39 1 3.4220 3.8229 5.2651 40 1 2.9340 3.5829 8.3540 41 1 3.9332 4.8844 7.5118 42 1 1.8848 5.6095 6.2030 43 1 0.8858 4.3078 7.0449 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087189597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:48 Heat of formation + Delta-G solvation = -41.034168 kcal Electronic energy + Delta-G solvation = -23023.630918 eV Core-core repulsion = 19684.184333 eV Total energy + Delta-G solvation = -3339.446585 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.89991 -38.44307 -36.19278 -35.95964 -33.12992 -32.51655 -31.45255 -30.68843 -29.42113 -26.11827 -24.21145 -23.58846 -22.33851 -21.60011 -21.00868 -19.14971 -18.48965 -17.23458 -16.35511 -16.03871 -15.84904 -15.34467 -14.72815 -14.34557 -14.06330 -13.95208 -13.81214 -13.56451 -13.37763 -12.76246 -12.68958 -12.52145 -12.17987 -12.05892 -11.84534 -11.74123 -11.23902 -11.23194 -11.02972 -10.95230 -10.82629 -10.77144 -10.67677 -10.32320 -10.12013 -9.89558 -9.65926 -9.48485 -8.66645 -8.65991 -7.94522 -6.96493 -6.06874 -3.81878 2.87673 3.06398 3.32728 3.39523 3.42027 4.19514 4.32003 4.64477 4.85355 4.86824 4.95030 5.04837 5.12076 5.27571 5.29239 5.35489 5.37621 5.51107 5.57131 5.67086 5.70873 5.72888 5.76424 5.86035 5.87240 5.93359 6.04149 6.11728 6.19166 6.29360 6.31199 6.54956 6.55645 6.58083 6.67423 6.84623 7.00189 7.46501 7.66327 8.32082 8.38877 9.12202 9.21439 9.72466 10.35934 11.02462 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018828 B = 0.004732 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.824844 B = 5915.429902 C = 6874.643417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.103 3.897 3 N -0.620 5.620 4 C 0.111 3.889 5 C -0.167 4.167 6 C 0.516 3.484 7 O -0.543 6.543 8 C -0.117 4.117 9 C -0.116 4.116 10 C 0.484 3.516 11 O -0.538 6.538 12 N -0.429 5.429 13 C -0.348 4.348 14 H 0.076 0.924 15 C 0.074 3.926 16 N -0.835 5.835 17 Si 0.912 3.088 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.274 1.274 21 C 0.076 3.924 22 C -0.174 4.174 23 C -0.207 4.207 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.263 0.737 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.075 2.971 -13.290 13.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.020 4.020 3 N -0.354 5.354 4 C -0.012 4.012 5 C -0.225 4.225 6 C 0.306 3.694 7 O -0.420 6.420 8 C -0.157 4.157 9 C -0.157 4.157 10 C 0.272 3.728 11 O -0.417 6.417 12 N -0.149 5.149 13 C -0.475 4.475 14 H 0.094 0.906 15 C -0.136 4.136 16 N -0.469 5.469 17 Si 0.739 3.261 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.199 1.199 21 C -0.031 4.031 22 C -0.212 4.212 23 C -0.246 4.246 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.073 0.927 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.994 2.772 -13.374 13.803 hybrid contribution -0.165 -0.559 0.592 0.831 sum -2.159 2.213 -12.782 13.151 Atomic orbital electron populations 1.22207 0.95847 1.02432 1.02507 1.21595 0.94540 0.82310 1.03558 1.48105 1.66870 1.14512 1.05936 1.21343 0.96268 0.98625 0.84921 1.22128 0.97305 1.01672 1.01438 1.21111 0.76068 0.86536 0.85680 1.90648 1.45569 1.18192 1.87581 1.21391 1.04452 0.99770 0.90068 1.21323 1.02906 0.98509 0.92975 1.19792 0.81578 0.87298 0.84161 1.90504 1.47293 1.17416 1.86485 1.42759 1.58108 1.08800 1.05279 1.18856 1.39279 0.96396 0.92938 0.90608 1.25224 0.93961 0.97962 0.96454 1.69835 1.23865 1.16688 1.36487 0.86224 0.79129 0.80015 0.80703 1.20374 1.21359 1.19945 1.21722 0.99528 0.84870 0.96947 1.23052 0.98100 1.02778 0.97283 1.23295 0.95958 0.99120 1.06275 0.91389 0.91904 0.92682 0.90623 0.89490 0.91030 0.90065 0.92718 0.91910 0.92105 0.88343 0.88625 0.90271 0.90275 0.92714 0.87820 0.87571 0.89861 0.89805 0.89198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.66 10.24 37.16 0.38 -1.28 16 2 C 0.10 1.07 5.93 -4.04 -0.02 1.05 16 3 N -0.62 -7.96 2.47 -173.69 -0.43 -8.38 16 4 C 0.11 1.21 6.13 -4.04 -0.02 1.18 16 5 C -0.17 -1.68 10.24 37.16 0.38 -1.30 16 6 C 0.52 8.48 7.67 -10.98 -0.08 8.39 16 7 O -0.54 -10.43 15.56 5.56 0.09 -10.34 16 8 C -0.12 -2.07 3.54 -27.88 -0.10 -2.17 16 9 C -0.12 -2.37 3.61 -27.88 -0.10 -2.47 16 10 C 0.48 12.32 6.97 -10.98 -0.08 12.24 16 11 O -0.54 -15.44 13.74 5.55 0.08 -15.37 16 12 N -0.43 -10.94 2.83 -107.73 -0.31 -11.24 16 13 C -0.35 -9.59 7.92 -14.93 -0.12 -9.71 16 14 H 0.08 2.04 7.26 -52.49 -0.38 1.66 16 15 C 0.07 2.09 4.39 -17.47 -0.08 2.02 16 16 N -0.84 -24.74 11.74 55.50 0.65 -24.09 16 17 Si 0.91 21.98 29.59 -169.99 -5.03 16.94 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 C 0.08 1.59 5.87 -67.93 -0.40 1.19 16 22 C -0.17 -3.29 9.80 -26.74 -0.26 -3.55 16 23 C -0.21 -3.74 10.36 -26.74 -0.28 -4.01 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.71 7.22 -51.93 -0.38 0.34 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.62 8.07 -51.93 -0.42 0.21 16 28 H 0.09 0.99 6.44 -51.93 -0.33 0.65 16 29 H 0.07 0.60 8.07 -51.93 -0.42 0.18 16 30 H 0.08 1.00 7.42 -51.93 -0.39 0.61 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.10 1.80 7.36 -51.93 -0.38 1.42 16 35 H 0.10 1.65 7.14 -51.93 -0.37 1.28 16 36 H 0.08 1.62 7.52 -51.93 -0.39 1.23 16 37 H 0.08 1.54 8.07 -51.93 -0.42 1.12 16 38 H 0.26 7.45 8.32 -40.82 -0.34 7.11 16 39 H 0.10 2.03 6.96 -51.93 -0.36 1.67 16 40 H 0.11 2.19 6.72 -51.93 -0.35 1.84 16 41 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 43 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 LS Contribution 351.63 15.07 5.30 5.30 Total: -1.00 -33.76 351.63 -7.54 -41.30 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -7.10 Total: 4.31 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -0.78 Total: 1.58 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -0.08 Total: -43.72 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: 0.16 Total: -25.71 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.76 -7.54 -41.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087189597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.263 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds