Wall clock time and date at job start Tue Mar 31 2020 05:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46510 * 109.46835 * 2 1 4 4 C 1.46500 * 120.00204 * 269.99859 * 3 2 1 5 5 C 1.53001 * 109.46778 * 270.00299 * 4 3 2 6 6 C 1.34780 * 119.99650 * 89.99791 * 3 2 1 7 7 O 1.21278 * 119.99606 * 179.97438 * 6 3 2 8 8 C 1.50699 * 119.99966 * 0.02562 * 6 3 2 9 9 C 1.53004 * 109.46805 * 179.97438 * 8 6 3 10 10 C 1.50701 * 109.46862 * 179.97438 * 9 8 6 11 11 O 1.21290 * 120.00084 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99984 * 179.97438 * 10 9 8 13 13 C 1.37097 * 120.00373 * 180.02562 * 12 10 9 14 14 H 1.07997 * 119.99852 * 224.29560 * 13 12 10 15 15 C 1.38949 * 119.99918 * 44.28910 * 13 12 10 16 16 N 1.31413 * 119.99917 * 18.21196 * 15 13 12 17 17 Si 1.86800 * 120.00189 * 198.21142 * 15 13 12 18 18 H 1.48500 * 109.46908 * 90.00326 * 17 15 13 19 19 H 1.48498 * 109.47192 * 210.00185 * 17 15 13 20 20 H 1.48497 * 109.46872 * 330.00379 * 17 15 13 21 21 C 1.46504 * 119.99876 * 0.02562 * 12 10 9 22 22 C 1.52995 * 117.49718 * 183.22163 * 21 12 10 23 23 C 1.52994 * 117.50128 * 114.59933 * 21 12 10 24 24 H 1.08995 * 109.46818 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47505 * 299.99991 * 1 2 3 26 26 H 1.09000 * 109.46760 * 60.00000 * 1 2 3 27 27 H 1.08994 * 109.47297 * 240.00480 * 2 1 3 28 28 H 1.08997 * 109.47263 * 119.99969 * 2 1 3 29 29 H 1.08996 * 109.47135 * 30.00127 * 4 3 2 30 30 H 1.08997 * 109.47144 * 149.99851 * 4 3 2 31 31 H 1.08997 * 109.47649 * 59.99861 * 5 4 3 32 32 H 1.09004 * 109.46610 * 180.02562 * 5 4 3 33 33 H 1.08996 * 109.47147 * 299.99821 * 5 4 3 34 34 H 1.09000 * 109.47666 * 59.99839 * 8 6 3 35 35 H 1.08995 * 109.47038 * 299.99366 * 8 6 3 36 36 H 1.08995 * 109.47008 * 299.99633 * 9 8 6 37 37 H 1.09002 * 109.46895 * 60.00189 * 9 8 6 38 38 H 0.97001 * 120.00005 * 174.93555 * 16 15 13 39 39 H 1.09006 * 115.54901 * 328.91915 * 21 12 10 40 40 H 1.08999 * 117.50473 * 359.97438 * 22 21 12 41 41 H 1.09002 * 117.50133 * 145.01673 * 22 21 12 42 42 H 1.09004 * 117.49750 * 214.97913 * 23 21 12 43 43 H 1.08996 * 117.49782 * 359.96796 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 -1.2687 5 6 3.7075 1.8315 -1.7103 6 6 2.2428 2.0166 1.1673 7 8 2.6475 3.1599 1.1673 8 6 1.9922 1.3060 2.4723 9 6 2.3240 2.2432 3.6353 10 6 2.0728 1.5328 4.9403 11 8 1.6686 0.3892 4.9403 12 7 2.2982 2.1678 6.1076 13 6 2.0701 1.5213 7.2949 14 1 1.5582 2.0311 8.0976 15 6 2.4976 0.2103 7.4654 16 7 3.4113 -0.2922 6.6656 17 14 1.7736 -0.8381 8.8315 18 1 0.5776 -1.5565 8.3231 19 1 2.7860 -1.8237 9.2885 20 1 1.3818 0.0327 9.9688 21 6 2.7869 3.5489 6.1076 22 6 3.0952 4.1890 7.4626 23 6 1.8597 4.6264 6.6733 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.5817 1.6879 -2.0283 30 1 2.0954 3.1412 -1.1384 31 1 3.8746 0.7624 -1.8406 32 1 3.8893 2.3458 -2.6540 33 1 4.3883 2.2156 -0.9506 34 1 2.6227 0.4187 2.5299 35 1 0.9444 1.0115 2.5302 36 1 3.3719 2.5374 3.5772 37 1 1.6937 3.1307 3.5779 38 1 3.7630 -1.1813 6.8291 39 1 3.4220 3.8229 5.2651 40 1 2.9340 3.5829 8.3540 41 1 3.9332 4.8844 7.5118 42 1 1.8848 5.6095 6.2030 43 1 0.8858 4.3078 7.0449 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087189597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:47 Heat of formation + Delta-G solvation = -61.419442 kcal Electronic energy + Delta-G solvation = -23024.514890 eV Core-core repulsion = 19684.184333 eV Total energy + Delta-G solvation = -3340.330557 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18536 -40.24936 -37.81730 -37.22033 -34.94973 -33.93593 -32.92770 -32.39839 -30.42470 -27.87046 -25.86266 -24.46797 -23.60067 -23.07429 -22.70519 -20.92740 -19.77428 -18.68284 -17.90222 -17.48143 -17.43841 -16.75762 -16.60799 -15.95021 -15.73529 -15.22279 -14.91174 -14.81889 -14.66994 -14.17925 -14.06790 -13.81909 -13.49778 -13.46580 -13.05241 -12.92360 -12.84243 -12.74263 -12.61422 -12.47626 -12.26432 -12.16726 -12.03330 -11.89140 -11.84326 -11.64505 -11.22609 -10.81313 -10.71343 -9.94045 -9.71938 -8.95606 -8.18016 -5.96884 1.37729 1.45701 1.50734 1.57805 1.98991 2.26436 2.42208 3.08465 3.13312 3.36320 3.57497 3.97137 4.03268 4.11275 4.12701 4.18536 4.23735 4.28813 4.31515 4.45368 4.49625 4.54592 4.59075 4.67262 4.76451 4.88344 4.92338 4.96721 4.98094 5.01941 5.04721 5.06712 5.28389 5.28846 5.36091 5.46109 5.51330 5.65619 6.22421 6.32730 7.05228 7.14184 7.20360 7.71528 8.36781 8.91052 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.018828 B = 0.004732 C = 0.004072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.824844 B = 5915.429902 C = 6874.643417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 N -0.611 5.611 4 C 0.107 3.893 5 C -0.162 4.162 6 C 0.518 3.482 7 O -0.576 6.576 8 C -0.108 4.108 9 C -0.100 4.100 10 C 0.469 3.531 11 O -0.581 6.581 12 N -0.444 5.444 13 C -0.358 4.358 14 H 0.077 0.923 15 C 0.023 3.977 16 N -0.873 5.873 17 Si 0.972 3.028 18 H -0.288 1.288 19 H -0.281 1.281 20 H -0.256 1.256 21 C 0.040 3.960 22 C -0.167 4.167 23 C -0.180 4.180 24 H 0.083 0.917 25 H 0.039 0.961 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.030 0.970 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.260 0.740 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.116 0.884 42 H 0.121 0.879 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.566 3.689 -14.467 15.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.024 4.024 3 N -0.344 5.344 4 C -0.015 4.015 5 C -0.220 4.220 6 C 0.308 3.692 7 O -0.456 6.456 8 C -0.148 4.148 9 C -0.140 4.140 10 C 0.258 3.742 11 O -0.463 6.463 12 N -0.164 5.164 13 C -0.485 4.485 14 H 0.095 0.905 15 C -0.183 4.183 16 N -0.508 5.508 17 Si 0.797 3.203 18 H -0.215 1.215 19 H -0.206 1.206 20 H -0.180 1.180 21 C -0.065 4.065 22 C -0.205 4.205 23 C -0.218 4.218 24 H 0.101 0.899 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.126 0.874 28 H 0.091 0.909 29 H 0.125 0.875 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.050 0.950 34 H 0.106 0.894 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.135 0.865 40 H 0.102 0.898 41 H 0.134 0.866 42 H 0.139 0.861 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.489 3.512 -14.557 15.180 hybrid contribution -0.040 -0.732 0.914 1.172 sum -2.529 2.780 -13.642 14.151 Atomic orbital electron populations 1.22169 0.95005 1.03335 1.02051 1.21813 0.95194 0.80929 1.04508 1.48166 1.65301 1.15289 1.05596 1.21571 0.97696 0.97804 0.84425 1.22087 0.95894 1.02532 1.01496 1.20758 0.76218 0.86047 0.86223 1.90629 1.47486 1.19423 1.88070 1.21234 1.04282 0.98896 0.90362 1.21140 1.02820 0.98757 0.91326 1.20594 0.80760 0.87126 0.85674 1.90457 1.49179 1.19300 1.87386 1.42990 1.58044 1.10542 1.04811 1.19119 1.38856 0.96926 0.93646 0.90541 1.26053 0.94205 0.99143 0.98870 1.69948 1.25476 1.16804 1.38541 0.85294 0.77881 0.78550 0.78613 1.21503 1.20614 1.17989 1.21996 1.02168 0.83323 0.98986 1.23102 0.99803 1.02500 0.95070 1.23302 0.94747 0.99326 1.04447 0.89859 0.94145 0.91282 0.87430 0.90851 0.87529 0.91624 0.91591 0.89677 0.95034 0.89358 0.88493 0.90526 0.89255 0.93096 0.86541 0.89769 0.86630 0.86124 0.90452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 10.24 71.98 0.74 -2.20 16 2 C 0.10 1.86 5.93 86.38 0.51 2.37 16 3 N -0.61 -14.92 2.47 -821.81 -2.03 -16.95 16 4 C 0.11 2.09 6.13 86.38 0.53 2.62 16 5 C -0.16 -2.93 10.24 71.98 0.74 -2.20 16 6 C 0.52 17.01 7.67 87.66 0.67 17.68 16 7 O -0.58 -22.20 15.56 -3.02 -0.05 -22.25 16 8 C -0.11 -3.90 3.54 29.85 0.11 -3.80 16 9 C -0.10 -4.15 3.61 29.85 0.11 -4.04 16 10 C 0.47 24.55 6.97 87.66 0.61 25.17 16 11 O -0.58 -34.58 13.74 -3.06 -0.04 -34.63 16 12 N -0.44 -23.01 2.83 -613.14 -1.74 -24.74 16 13 C -0.36 -20.09 7.92 84.04 0.67 -19.42 16 14 H 0.08 4.16 7.26 -2.91 -0.02 4.14 16 15 C 0.02 1.34 4.39 84.93 0.37 1.72 16 16 N -0.87 -53.22 11.74 21.66 0.25 -52.96 16 17 Si 0.97 45.83 29.59 68.60 2.03 47.86 16 18 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 19 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 20 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 21 C 0.04 1.67 5.87 44.99 0.26 1.94 16 22 C -0.17 -6.04 9.80 30.59 0.30 -5.74 16 23 C -0.18 -6.09 10.36 30.59 0.32 -5.78 16 24 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.04 0.89 7.22 -2.39 -0.02 0.87 16 26 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.11 1.41 8.07 -2.39 -0.02 1.39 16 28 H 0.07 1.63 6.44 -2.39 -0.02 1.62 16 29 H 0.11 1.38 8.07 -2.39 -0.02 1.36 16 30 H 0.07 1.52 7.42 -2.39 -0.02 1.51 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 3.37 7.36 -2.39 -0.02 3.35 16 35 H 0.10 3.45 7.14 -2.39 -0.02 3.43 16 36 H 0.08 3.21 7.52 -2.39 -0.02 3.19 16 37 H 0.09 3.50 8.07 -2.39 -0.02 3.48 16 38 H 0.26 15.20 8.32 -92.71 -0.77 14.43 16 39 H 0.12 4.47 6.96 -2.38 -0.02 4.45 16 40 H 0.08 3.43 6.72 -2.39 -0.02 3.42 16 41 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 42 H 0.12 3.24 8.14 -2.38 -0.02 3.22 16 43 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -75.36 351.63 5.34 -70.03 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.98 Total: 25.32 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 5.93 Total: 8.32 kcal Atomic # 7 Polarization: -91.14 SS G_CDS: -3.52 Total: -94.65 kcal Atomic # 8 Polarization: -56.79 SS G_CDS: -0.09 Total: -56.88 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -75.36 5.34 -70.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087189597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.606 kcal (2) G-P(sol) polarization free energy of solvation -75.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds