Wall clock time and date at job start Tue Mar 31 2020 05:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46770 * 2 1 4 4 N 1.46497 * 109.47192 * 239.99671 * 2 1 3 5 5 C 1.34780 * 119.99531 * 85.00104 * 4 2 1 6 6 O 1.21280 * 120.00561 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99656 * 179.97438 * 5 4 2 8 8 C 1.52994 * 109.47192 * 299.99810 * 7 5 4 9 9 C 1.53001 * 109.47127 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47413 * 59.99738 * 9 8 7 11 11 C 1.52994 * 109.47188 * 300.00225 * 10 9 8 12 12 C 1.53004 * 109.47180 * 59.99972 * 11 10 9 13 13 C 1.50701 * 109.47095 * 119.99956 * 2 1 3 14 14 O 1.21295 * 119.99998 * 120.00360 * 13 2 1 15 15 N 1.34778 * 119.99908 * 300.00230 * 13 2 1 16 16 C 1.46501 * 120.00153 * 359.97438 * 15 13 2 17 17 C 1.37104 * 119.99872 * 180.02562 * 15 13 2 18 18 H 1.07997 * 119.99437 * 321.52045 * 17 15 13 19 19 C 1.38948 * 120.00037 * 141.52766 * 17 15 13 20 20 N 1.31414 * 120.00134 * 157.47715 * 19 17 15 21 21 Si 1.86800 * 119.99961 * 337.47210 * 19 17 15 22 22 H 1.48501 * 109.47404 * 95.63705 * 21 19 17 23 23 H 1.48498 * 109.47343 * 215.63972 * 21 19 17 24 24 H 1.48504 * 109.47045 * 335.63871 * 21 19 17 25 25 H 1.08996 * 109.46889 * 60.00416 * 1 2 3 26 26 H 1.09002 * 109.46770 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47192 * 299.99802 * 1 2 3 28 28 H 0.96997 * 120.00717 * 264.99915 * 4 2 1 29 29 H 1.08997 * 109.47217 * 60.00331 * 7 5 4 30 30 H 1.09005 * 109.47182 * 300.00232 * 8 7 5 31 31 H 1.08996 * 109.47426 * 59.99996 * 8 7 5 32 32 H 1.08999 * 109.47218 * 299.99596 * 9 8 7 33 33 H 1.08997 * 109.47064 * 179.97438 * 9 8 7 34 34 H 1.09000 * 109.47304 * 179.97438 * 10 9 8 35 35 H 1.09005 * 109.46846 * 60.00170 * 10 9 8 36 36 H 1.08997 * 109.47465 * 299.99602 * 11 10 9 37 37 H 1.09003 * 109.47425 * 179.97438 * 11 10 9 38 38 H 1.08997 * 109.47116 * 180.02562 * 12 11 10 39 39 H 1.09005 * 109.47253 * 59.99811 * 12 11 10 40 40 H 1.09005 * 109.46714 * 88.84203 * 16 15 13 41 41 H 1.08999 * 109.47453 * 208.84074 * 16 15 13 42 42 H 1.08996 * 109.47142 * 328.84272 * 16 15 13 43 43 H 0.96999 * 119.99995 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1471 -0.0183 -2.3571 6 8 1.8582 1.1584 -2.4117 7 6 2.6500 -0.7286 -3.5874 8 6 4.0527 -1.2784 -3.3213 9 6 4.5635 -1.9990 -4.5705 10 6 4.6149 -1.0156 -5.7415 11 6 3.2122 -0.4657 -6.0076 12 6 2.7014 0.2550 -4.7583 13 6 2.0324 -0.7104 1.2305 14 8 2.7298 -1.6966 1.1192 15 7 1.7067 -0.2499 2.4546 16 6 0.8649 0.9415 2.5890 17 6 2.1642 -0.8959 3.5740 18 1 2.2146 -1.9746 3.5922 19 6 2.5627 -0.1629 4.6851 20 7 2.5756 -0.7248 5.8730 21 14 3.0804 1.6214 4.4902 22 1 1.9238 2.5068 4.7794 23 1 4.1837 1.9230 5.4373 24 1 3.5452 1.8528 3.0989 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.2491 -1.6318 -1.1526 29 1 1.9778 -1.5508 -3.8325 30 1 4.7249 -0.4561 -3.0762 31 1 4.0162 -1.9788 -2.4869 32 1 3.8915 -2.8214 -4.8160 33 1 5.5630 -2.3904 -4.3811 34 1 4.9793 -1.5289 -6.6314 35 1 5.2870 -0.1933 -5.4960 36 1 2.5401 -1.2880 -6.2531 37 1 3.2489 0.2353 -6.8415 38 1 1.7019 0.6463 -4.9478 39 1 3.3735 1.0773 -4.5129 40 1 -0.1841 0.6456 2.6014 41 1 1.1084 1.4555 3.5188 42 1 1.0440 1.6098 1.7468 43 1 2.8535 -0.2129 6.6486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101515165.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:06 Heat of formation + Delta-G solvation = -80.297903 kcal Electronic energy + Delta-G solvation = -23086.716092 eV Core-core repulsion = 19745.566904 eV Total energy + Delta-G solvation = -3341.149188 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.28101 -38.96639 -37.51304 -35.11915 -34.47482 -32.32945 -31.58054 -30.85407 -29.76696 -26.52417 -25.45173 -24.24513 -22.82361 -22.47921 -20.34685 -19.73383 -19.14525 -17.33815 -17.13670 -16.17985 -15.67963 -15.46884 -15.24133 -14.71208 -14.39897 -14.26477 -14.18261 -13.85001 -13.46942 -13.02987 -12.78773 -12.70219 -12.48118 -12.39183 -12.31139 -12.01352 -11.72854 -11.53266 -11.40822 -11.27273 -11.18142 -10.84565 -10.78698 -10.55946 -10.34882 -10.24276 -9.99236 -9.53409 -9.14419 -8.94833 -8.52131 -7.82640 -6.47172 -4.05465 2.79612 2.99728 3.18883 3.24689 3.31165 3.59545 4.09531 4.37455 4.52590 4.56919 4.60305 4.89372 5.03216 5.05060 5.11824 5.25702 5.29698 5.34428 5.36678 5.45216 5.49208 5.53456 5.66975 5.71263 5.87892 5.90427 5.92383 5.94085 6.02736 6.03388 6.07690 6.10885 6.17671 6.23405 6.29779 6.43232 6.65993 7.45090 7.77372 8.18313 8.36447 8.46431 8.85369 9.22224 9.63112 10.64344 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.028766 B = 0.003997 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.130376 B = 7003.014450 C = 7256.146210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.125 3.875 3 H 0.101 0.899 4 N -0.704 5.704 5 C 0.517 3.483 6 O -0.549 6.549 7 C -0.103 4.103 8 C -0.114 4.114 9 C -0.117 4.117 10 C -0.122 4.122 11 C -0.119 4.119 12 C -0.098 4.098 13 C 0.458 3.542 14 O -0.564 6.564 15 N -0.460 5.460 16 C 0.058 3.942 17 C -0.320 4.320 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.859 5.859 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.264 1.264 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.408 0.592 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.147 1.575 -19.242 19.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.016 3.984 3 H 0.119 0.881 4 N -0.357 5.357 5 C 0.303 3.697 6 O -0.427 6.427 7 C -0.125 4.125 8 C -0.152 4.152 9 C -0.154 4.154 10 C -0.159 4.159 11 C -0.157 4.157 12 C -0.136 4.136 13 C 0.245 3.755 14 O -0.446 6.446 15 N -0.182 5.182 16 C -0.085 4.085 17 C -0.447 4.447 18 H 0.124 0.876 19 C -0.144 4.144 20 N -0.495 5.495 21 Si 0.704 3.296 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.189 1.189 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.245 0.755 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.964 1.918 -19.070 19.191 hybrid contribution 0.357 0.579 0.288 0.739 sum -0.608 2.497 -18.783 18.958 Atomic orbital electron populations 1.22349 0.93980 1.02929 1.03419 1.20779 0.95041 0.97715 0.84856 0.88135 1.45809 1.66392 1.14881 1.08576 1.20654 0.77274 0.87239 0.84529 1.90661 1.50774 1.16066 1.85228 1.21327 0.98451 0.99336 0.93365 1.21559 0.94564 1.00609 0.98447 1.21522 1.01330 0.98020 0.94574 1.21571 0.97202 0.99077 0.98098 1.21559 0.96645 0.99946 0.97509 1.21338 1.02266 0.97277 0.92730 1.20222 0.83318 0.87700 0.84227 1.90536 1.40528 1.27811 1.85750 1.43568 1.43581 1.25906 1.05105 1.22234 0.95519 0.89123 1.01644 1.19032 1.43384 0.93703 0.88622 0.87614 1.25366 0.95508 0.98764 0.94736 1.69760 1.43108 1.38369 0.98237 0.86957 0.78695 0.84781 0.79143 1.20043 1.21232 1.18854 0.91884 0.92118 0.89988 0.75470 0.88659 0.91333 0.90849 0.91769 0.91625 0.92117 0.91924 0.91989 0.91843 0.91329 0.91217 0.92223 0.91684 0.92240 0.91453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 9.13 37.16 0.34 -2.25 16 2 C 0.12 2.26 2.18 -69.08 -0.15 2.11 16 3 H 0.10 1.88 6.84 -51.93 -0.36 1.53 16 4 N -0.70 -11.40 4.84 -54.93 -0.27 -11.67 16 5 C 0.52 7.90 7.12 -10.98 -0.08 7.82 16 6 O -0.55 -10.00 15.64 5.56 0.09 -9.91 16 7 C -0.10 -1.18 2.53 -91.77 -0.23 -1.41 16 8 C -0.11 -1.23 5.10 -26.73 -0.14 -1.37 16 9 C -0.12 -1.01 5.92 -26.73 -0.16 -1.17 16 10 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 11 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 12 C -0.10 -1.05 4.49 -26.73 -0.12 -1.17 16 13 C 0.46 10.40 7.10 -10.98 -0.08 10.33 16 14 O -0.56 -14.49 15.72 5.54 0.09 -14.40 16 15 N -0.46 -10.96 2.56 -122.19 -0.31 -11.27 16 16 C 0.06 1.13 7.58 59.85 0.45 1.58 16 17 C -0.32 -8.95 9.33 -14.93 -0.14 -9.09 16 18 H 0.11 3.30 7.93 -52.49 -0.42 2.89 16 19 C 0.06 1.72 5.29 -17.47 -0.09 1.63 16 20 N -0.86 -24.51 13.96 55.50 0.77 -23.73 16 21 Si 0.88 20.47 25.10 -169.99 -4.27 16.20 16 22 H -0.27 -5.90 6.69 56.52 0.38 -5.52 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.26 -6.22 7.11 56.52 0.40 -5.82 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.08 1.19 4.51 -51.93 -0.23 0.95 16 28 H 0.41 6.38 7.21 -40.82 -0.29 6.08 16 29 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.83 7.56 -51.93 -0.39 0.44 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 39 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 40 H 0.06 1.01 6.87 -51.93 -0.36 0.65 16 41 H 0.06 1.34 3.47 -51.93 -0.18 1.16 16 42 H 0.06 0.99 6.10 -51.93 -0.32 0.68 16 43 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 332.75 15.07 5.01 5.01 Total: -1.00 -31.98 332.75 -6.36 -38.34 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.77 Total: 6.72 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -0.71 Total: 4.71 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: 0.20 Total: -46.67 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: 0.17 Total: -24.31 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.27 Total: 16.20 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.98 -6.36 -38.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101515165.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.958 kcal (2) G-P(sol) polarization free energy of solvation -31.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds