Wall clock time and date at job start Tue Mar 31 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46913 * 2 1 4 4 C 1.46496 * 120.00275 * 269.99798 * 3 2 1 5 5 C 1.50703 * 109.47458 * 270.00554 * 4 3 2 6 6 H 1.07997 * 119.99364 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99878 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00456 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99863 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47024 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47385 * 119.99723 * 9 7 5 12 12 H 1.48499 * 109.47239 * 240.00152 * 9 7 5 13 13 C 1.34777 * 119.99858 * 90.00448 * 3 2 1 14 14 O 1.21279 * 120.00166 * 180.02562 * 13 3 2 15 15 C 1.50706 * 120.00142 * 359.97438 * 13 3 2 16 16 C 1.52999 * 109.46957 * 180.02562 * 15 13 3 17 17 C 1.53006 * 109.46626 * 180.02562 * 16 15 13 18 18 N 1.46500 * 109.46998 * 179.97438 * 17 16 15 19 19 C 1.34769 * 120.00241 * 180.02562 * 18 17 16 20 20 O 1.21282 * 119.99850 * 359.97438 * 19 18 17 21 21 C 1.50702 * 120.00466 * 179.97438 * 19 18 17 22 22 C 1.52993 * 117.50134 * 248.62077 * 21 19 18 23 23 C 1.52992 * 60.00113 * 252.50748 * 22 21 19 24 24 H 1.08998 * 109.47418 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47224 * 300.00004 * 1 2 3 26 26 H 1.09005 * 109.47055 * 59.99862 * 1 2 3 27 27 H 1.08994 * 109.47070 * 240.00414 * 2 1 3 28 28 H 1.08996 * 109.47306 * 120.00158 * 2 1 3 29 29 H 1.09002 * 109.47055 * 30.00737 * 4 3 2 30 30 H 1.09004 * 109.47419 * 150.00116 * 4 3 2 31 31 H 0.96999 * 120.00041 * 180.02562 * 8 7 5 32 32 H 1.08993 * 109.46700 * 59.99973 * 15 13 3 33 33 H 1.09000 * 109.46974 * 300.00347 * 15 13 3 34 34 H 1.08993 * 109.47839 * 60.00178 * 16 15 13 35 35 H 1.09000 * 109.47160 * 299.99740 * 16 15 13 36 36 H 1.09000 * 109.47050 * 299.99699 * 17 16 15 37 37 H 1.09001 * 109.46801 * 59.99811 * 17 16 15 38 38 H 0.97010 * 119.99910 * 359.97438 * 18 17 16 39 39 H 1.09006 * 115.54572 * 34.32703 * 21 19 18 40 40 H 1.09004 * 117.50164 * 359.97438 * 22 21 19 41 41 H 1.09006 * 117.50291 * 145.01542 * 22 21 19 42 42 H 1.08997 * 117.49927 * 252.51226 * 23 22 21 43 43 H 1.09002 * 117.51900 * 107.47687 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3906 -2.8774 8 7 3.3496 3.1276 -3.6169 9 14 5.9137 2.0977 -3.4164 10 1 6.6014 1.2424 -2.4159 11 1 5.9217 1.4192 -4.7372 12 1 6.6210 3.3990 -3.5240 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1673 15 6 1.9914 1.3063 2.4724 16 6 2.3224 2.2438 3.6353 17 6 2.0675 1.5224 4.9603 18 7 2.3850 2.4199 6.0738 19 6 2.2359 1.9961 7.3445 20 8 1.8384 0.8719 7.5660 21 6 2.5630 2.9191 8.4900 22 6 3.7825 2.5758 9.3477 23 6 2.3729 2.3791 9.9088 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.5816 1.6879 -2.0283 30 1 2.0955 3.1412 -1.1383 31 1 3.6757 3.5181 -4.4428 32 1 2.6212 0.4187 2.5302 33 1 0.9433 1.0124 2.5299 34 1 1.6922 3.1313 3.5773 35 1 3.3703 2.5380 3.5779 36 1 1.0196 1.2279 5.0179 37 1 2.6980 0.6352 5.0180 38 1 2.7032 3.3190 5.8966 39 1 2.3477 3.9740 8.3199 40 1 4.3481 1.6822 9.0838 41 1 4.3701 3.4050 9.7420 42 1 2.0329 3.0789 10.6722 43 1 2.0108 1.3564 10.0137 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103209646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:14 Heat of formation + Delta-G solvation = -65.539710 kcal Electronic energy + Delta-G solvation = -21654.908256 eV Core-core repulsion = 18314.399031 eV Total energy + Delta-G solvation = -3340.509225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.12498 -39.14241 -36.72544 -35.61563 -35.17865 -32.99871 -32.39286 -30.08465 -28.15070 -26.53116 -24.30911 -23.02580 -22.78352 -22.59236 -21.46866 -20.16410 -18.27268 -17.66560 -16.65675 -16.39398 -16.01116 -15.88686 -15.36369 -15.29949 -14.73766 -14.40963 -14.07987 -13.79472 -13.36524 -13.02856 -12.82060 -12.62235 -12.22636 -11.96600 -11.93890 -11.86352 -11.68541 -11.34989 -11.18570 -10.97691 -10.94848 -10.86272 -10.83462 -10.64379 -10.51155 -10.13522 -10.05150 -9.62206 -9.23776 -8.90230 -8.44708 -7.66192 -6.05206 -4.09843 2.28803 2.91833 3.28691 3.35803 3.38917 3.44965 3.54457 3.94628 4.38630 4.43734 4.48051 4.54828 4.76690 4.85186 5.00660 5.11104 5.24950 5.27483 5.31061 5.37611 5.43758 5.48864 5.59503 5.63053 5.65515 5.71526 5.78352 5.82587 6.05096 6.15431 6.20127 6.24016 6.32701 6.49547 7.07175 7.31599 7.44390 7.55358 7.91565 8.03602 8.23229 8.43430 8.89939 9.09885 9.55443 11.02896 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023158 B = 0.002872 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.813612 B = 9746.342338 C =10490.159573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.598 5.598 4 C 0.245 3.755 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.505 3.495 14 O -0.545 6.545 15 C -0.137 4.137 16 C -0.115 4.115 17 C 0.118 3.882 18 N -0.724 5.724 19 C 0.541 3.459 20 O -0.544 6.544 21 C -0.196 4.196 22 C -0.153 4.153 23 C -0.149 4.149 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.031 0.969 30 H 0.042 0.958 31 H 0.262 0.738 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.404 0.596 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.102 0.898 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.742 -3.204 20.708 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.330 5.330 4 C 0.126 3.874 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.291 3.709 14 O -0.423 6.423 15 C -0.178 4.178 16 C -0.153 4.153 17 C -0.005 4.005 18 N -0.375 5.375 19 C 0.327 3.673 20 O -0.422 6.422 21 C -0.217 4.217 22 C -0.190 4.190 23 C -0.186 4.186 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.238 0.762 39 H 0.142 0.858 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.828 -3.315 20.639 21.251 hybrid contribution 1.065 0.301 -0.707 1.314 sum -2.763 -3.014 19.932 20.347 Atomic orbital electron populations 1.22221 0.96825 1.01416 1.02289 1.21416 0.93483 0.84219 1.02698 1.48267 1.63610 1.13261 1.07824 1.19266 0.96246 0.93631 0.78266 1.21472 0.96926 1.31726 1.06200 0.92465 1.24942 0.97862 0.94955 0.96435 1.69942 1.35609 1.33509 1.14364 0.86448 0.84653 0.78039 0.78314 1.19816 1.20968 1.20892 1.20275 0.78466 0.86935 0.85190 1.90660 1.46074 1.18214 1.87339 1.21607 1.03333 0.99680 0.93202 1.21510 1.03783 0.98755 0.91281 1.21443 1.01180 0.93029 0.84855 1.45958 1.67943 1.18076 1.05518 1.19666 0.77055 0.87242 0.83350 1.90694 1.46172 1.20520 1.84819 1.22214 1.07151 1.00301 0.92073 1.22943 0.90767 1.03792 1.01536 1.22947 0.98935 1.03477 0.93245 0.92177 0.93037 0.92107 0.90040 0.91625 0.95077 0.93949 0.92789 0.89245 0.89350 0.90518 0.90394 0.91388 0.91394 0.76170 0.85778 0.88219 0.87722 0.87930 0.87413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.11 1.66 5.93 -4.04 -0.02 1.64 16 3 N -0.60 -12.39 2.46 -175.06 -0.43 -12.82 16 4 C 0.25 6.37 5.16 -5.19 -0.03 6.35 16 5 C -0.52 -14.82 9.39 -34.44 -0.32 -15.15 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 9 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.50 10.09 7.67 -10.98 -0.08 10.01 16 14 O -0.54 -13.27 15.56 5.56 0.09 -13.18 16 15 C -0.14 -1.88 4.25 -27.88 -0.12 -2.00 16 16 C -0.12 -1.42 4.62 -26.73 -0.12 -1.55 16 17 C 0.12 1.30 5.67 -4.04 -0.02 1.27 16 18 N -0.72 -7.30 5.56 -60.29 -0.33 -7.64 16 19 C 0.54 6.16 7.61 -10.99 -0.08 6.08 16 20 O -0.54 -8.24 16.26 5.56 0.09 -8.15 16 21 C -0.20 -1.59 6.19 -91.78 -0.57 -2.16 16 22 C -0.15 -1.06 10.23 -26.74 -0.27 -1.34 16 23 C -0.15 -1.11 10.04 -26.74 -0.27 -1.38 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.64 7.22 -51.93 -0.37 0.26 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 28 H 0.07 0.85 6.44 -51.93 -0.33 0.51 16 29 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.09 1.09 7.40 -51.93 -0.38 0.71 16 33 H 0.09 1.03 7.18 -51.93 -0.37 0.66 16 34 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.40 3.20 8.47 -40.82 -0.35 2.86 16 39 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.11 0.97 7.67 -51.93 -0.40 0.57 16 LS Contribution 361.85 15.07 5.45 5.45 Total: -1.00 -35.11 361.85 -8.26 -43.37 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -7.20 Total: 0.48 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -1.63 Total: 1.54 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.03 Total: -46.32 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: 0.18 Total: -21.33 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.11 -8.26 -43.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.174 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds