Wall clock time and date at job start Tue Mar 31 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46913 * 2 1 4 4 C 1.46496 * 120.00275 * 269.99798 * 3 2 1 5 5 C 1.50703 * 109.47458 * 270.00554 * 4 3 2 6 6 H 1.07997 * 119.99364 * 359.97438 * 5 4 3 7 7 C 1.37870 * 119.99878 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00456 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99863 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47024 * 359.97438 * 9 7 5 11 11 H 1.48491 * 109.47385 * 119.99723 * 9 7 5 12 12 H 1.48499 * 109.47239 * 240.00152 * 9 7 5 13 13 C 1.34777 * 119.99858 * 90.00448 * 3 2 1 14 14 O 1.21279 * 120.00166 * 180.02562 * 13 3 2 15 15 C 1.50706 * 120.00142 * 359.97438 * 13 3 2 16 16 C 1.52999 * 109.46957 * 180.02562 * 15 13 3 17 17 C 1.53006 * 109.46626 * 180.02562 * 16 15 13 18 18 N 1.46500 * 109.46998 * 179.97438 * 17 16 15 19 19 C 1.34769 * 120.00241 * 180.02562 * 18 17 16 20 20 O 1.21282 * 119.99850 * 359.97438 * 19 18 17 21 21 C 1.50702 * 120.00466 * 179.97438 * 19 18 17 22 22 C 1.52993 * 117.50134 * 248.62077 * 21 19 18 23 23 C 1.52992 * 60.00113 * 252.50748 * 22 21 19 24 24 H 1.08998 * 109.47418 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47224 * 300.00004 * 1 2 3 26 26 H 1.09005 * 109.47055 * 59.99862 * 1 2 3 27 27 H 1.08994 * 109.47070 * 240.00414 * 2 1 3 28 28 H 1.08996 * 109.47306 * 120.00158 * 2 1 3 29 29 H 1.09002 * 109.47055 * 30.00737 * 4 3 2 30 30 H 1.09004 * 109.47419 * 150.00116 * 4 3 2 31 31 H 0.96999 * 120.00041 * 180.02562 * 8 7 5 32 32 H 1.08993 * 109.46700 * 59.99973 * 15 13 3 33 33 H 1.09000 * 109.46974 * 300.00347 * 15 13 3 34 34 H 1.08993 * 109.47839 * 60.00178 * 16 15 13 35 35 H 1.09000 * 109.47160 * 299.99740 * 16 15 13 36 36 H 1.09000 * 109.47050 * 299.99699 * 17 16 15 37 37 H 1.09001 * 109.46801 * 59.99811 * 17 16 15 38 38 H 0.97010 * 119.99910 * 359.97438 * 18 17 16 39 39 H 1.09006 * 115.54572 * 34.32703 * 21 19 18 40 40 H 1.09004 * 117.50164 * 359.97438 * 22 21 19 41 41 H 1.09006 * 117.50291 * 145.01542 * 22 21 19 42 42 H 1.08997 * 117.49927 * 252.51226 * 23 22 21 43 43 H 1.09002 * 117.51900 * 107.47687 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6858 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0958 7 6 4.1493 2.3906 -2.8774 8 7 3.3496 3.1276 -3.6169 9 14 5.9137 2.0977 -3.4164 10 1 6.6014 1.2424 -2.4159 11 1 5.9217 1.4192 -4.7372 12 1 6.6210 3.3990 -3.5240 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1673 15 6 1.9914 1.3063 2.4724 16 6 2.3224 2.2438 3.6353 17 6 2.0675 1.5224 4.9603 18 7 2.3850 2.4199 6.0738 19 6 2.2359 1.9961 7.3445 20 8 1.8384 0.8719 7.5660 21 6 2.5630 2.9191 8.4900 22 6 3.7825 2.5758 9.3477 23 6 2.3729 2.3791 9.9088 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.5816 1.6879 -2.0283 30 1 2.0955 3.1412 -1.1383 31 1 3.6757 3.5181 -4.4428 32 1 2.6212 0.4187 2.5302 33 1 0.9433 1.0124 2.5299 34 1 1.6922 3.1313 3.5773 35 1 3.3703 2.5380 3.5779 36 1 1.0196 1.2279 5.0179 37 1 2.6980 0.6352 5.0180 38 1 2.7032 3.3190 5.8966 39 1 2.3477 3.9740 8.3199 40 1 4.3481 1.6822 9.0838 41 1 4.3701 3.4050 9.7420 42 1 2.0329 3.0789 10.6722 43 1 2.0108 1.3564 10.0137 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103209646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:14 Heat of formation + Delta-G solvation = -89.399911 kcal Electronic energy + Delta-G solvation = -21655.942912 eV Core-core repulsion = 18314.399031 eV Total energy + Delta-G solvation = -3341.543881 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.01976 -40.67500 -37.47351 -36.97101 -36.38186 -34.94619 -33.63863 -31.57692 -29.64384 -28.02346 -25.49657 -24.55918 -23.90379 -23.29299 -22.57730 -21.02080 -19.77908 -18.64007 -18.43021 -17.87347 -17.27414 -17.03583 -16.77905 -16.27785 -16.06280 -15.75235 -15.12441 -14.99109 -14.66368 -14.39782 -14.28730 -13.69325 -13.52501 -13.34235 -13.25826 -13.13039 -12.90032 -12.73293 -12.55134 -12.42989 -12.35562 -12.18304 -11.98254 -11.72754 -11.67401 -11.53884 -11.44109 -10.95546 -10.65699 -10.55627 -10.11994 -9.41916 -8.22955 -6.37899 1.35753 1.37856 1.46957 1.49811 1.87637 2.08317 2.34249 2.51110 2.93726 3.06377 3.61477 3.73021 3.87564 3.98844 4.00903 4.03970 4.13606 4.23176 4.31881 4.42748 4.53503 4.63411 4.68911 4.71379 4.75047 4.92758 4.98403 5.00761 5.04126 5.06626 5.12862 5.22256 5.23546 5.24904 5.40591 5.43909 5.58590 5.87245 6.06578 6.52132 6.70386 6.83637 7.20693 7.28430 7.51627 8.84232 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.023158 B = 0.002872 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.813612 B = 9746.342338 C =10490.159573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.606 5.606 4 C 0.261 3.739 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.266 1.266 11 H -0.270 1.270 12 H -0.282 1.282 13 C 0.494 3.506 14 O -0.599 6.599 15 C -0.124 4.124 16 C -0.104 4.104 17 C 0.127 3.873 18 N -0.718 5.718 19 C 0.535 3.465 20 O -0.588 6.588 21 C -0.203 4.203 22 C -0.144 4.144 23 C -0.151 4.151 24 H 0.094 0.906 25 H 0.062 0.938 26 H 0.036 0.964 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.019 0.981 30 H -0.004 1.004 31 H 0.267 0.733 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.415 0.585 39 H 0.150 0.850 40 H 0.086 0.914 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.199 -4.229 22.337 22.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.139 3.861 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.195 1.195 12 H -0.207 1.207 13 C 0.283 3.717 14 O -0.481 6.481 15 C -0.164 4.164 16 C -0.142 4.142 17 C 0.003 3.997 18 N -0.369 5.369 19 C 0.323 3.677 20 O -0.469 6.469 21 C -0.224 4.224 22 C -0.182 4.182 23 C -0.189 4.189 24 H 0.113 0.887 25 H 0.081 0.919 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.122 0.878 29 H 0.037 0.963 30 H 0.014 0.986 31 H 0.076 0.924 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.251 0.749 39 H 0.168 0.832 40 H 0.105 0.895 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.299 -4.363 22.275 22.937 hybrid contribution 0.856 0.624 -1.220 1.616 sum -2.443 -3.738 21.055 21.523 Atomic orbital electron populations 1.22158 0.94667 1.03452 1.01688 1.21750 0.95244 0.81363 1.03964 1.48318 1.63837 1.15131 1.06364 1.18691 0.95233 0.91512 0.80673 1.21739 0.97865 1.31798 1.06474 0.92865 1.25880 1.02453 0.94515 0.96487 1.70060 1.37746 1.34285 1.14859 0.85355 0.78971 0.78012 0.78390 1.19047 1.19486 1.20739 1.21408 0.76943 0.86544 0.86765 1.90628 1.48397 1.20833 1.88259 1.21604 1.05702 0.99747 0.89329 1.21367 1.02791 0.98420 0.91643 1.21281 1.01350 0.92840 0.84192 1.45936 1.67323 1.18499 1.05161 1.20256 0.76142 0.87121 0.84210 1.90670 1.48280 1.22493 1.85459 1.22302 1.08264 1.00788 0.91009 1.23036 0.90507 1.04106 1.00501 1.23011 0.99448 1.02935 0.93485 0.88743 0.91865 0.94519 0.91275 0.87839 0.96266 0.98613 0.92429 0.86786 0.86326 0.91241 0.91702 0.91062 0.91439 0.74882 0.83229 0.89494 0.85152 0.85526 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 10.24 71.98 0.74 -3.17 16 2 C 0.10 2.94 5.93 86.38 0.51 3.46 16 3 N -0.61 -25.29 2.46 -826.15 -2.03 -27.32 16 4 C 0.26 14.14 5.16 85.63 0.44 14.59 16 5 C -0.54 -31.28 9.39 25.60 0.24 -31.04 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.31 5.46 84.65 0.46 0.77 16 8 N -0.93 -56.62 13.29 21.44 0.28 -56.33 16 9 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 10 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 13 C 0.49 19.74 7.67 87.66 0.67 20.42 16 14 O -0.60 -30.19 15.56 -3.03 -0.05 -30.23 16 15 C -0.12 -3.11 4.25 29.85 0.13 -2.98 16 16 C -0.10 -2.43 4.62 30.60 0.14 -2.29 16 17 C 0.13 2.55 5.67 86.38 0.49 3.04 16 18 N -0.72 -13.43 5.56 -463.05 -2.57 -16.00 16 19 C 0.53 11.59 7.61 87.66 0.67 12.25 16 20 O -0.59 -17.58 16.26 -3.04 -0.05 -17.63 16 21 C -0.20 -2.89 6.19 -11.54 -0.07 -2.96 16 22 C -0.14 -1.71 10.23 30.59 0.31 -1.40 16 23 C -0.15 -2.02 10.04 30.59 0.31 -1.71 16 24 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.06 1.38 7.22 -2.38 -0.02 1.37 16 26 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.07 2.22 8.07 -2.39 -0.02 2.21 16 28 H 0.10 2.30 6.44 -2.39 -0.02 2.28 16 29 H 0.02 1.07 8.07 -2.39 -0.02 1.05 16 30 H 0.00 -0.27 7.42 -2.38 -0.02 -0.29 16 31 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 32 H 0.11 2.37 7.40 -2.39 -0.02 2.35 16 33 H 0.12 2.32 7.18 -2.39 -0.02 2.30 16 34 H 0.07 1.74 8.10 -2.39 -0.02 1.72 16 35 H 0.06 1.70 8.10 -2.39 -0.02 1.68 16 36 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.41 5.92 8.47 -92.70 -0.79 5.14 16 39 H 0.15 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.13 0.88 8.14 -2.38 -0.02 0.87 16 42 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.09 1.54 7.67 -2.39 -0.02 1.52 16 Total: -1.00 -80.35 361.85 2.86 -77.49 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.21 Total: 13.99 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 5.04 Total: 8.97 kcal Atomic # 7 Polarization: -95.34 SS G_CDS: -4.32 Total: -99.65 kcal Atomic # 8 Polarization: -47.76 SS G_CDS: -0.10 Total: -47.86 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -80.35 2.86 -77.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103209646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.907 kcal (2) G-P(sol) polarization free energy of solvation -80.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds