Wall clock time and date at job start Tue Mar 31 2020 05:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47386 * 2 1 4 4 C 1.50696 * 109.47294 * 239.99967 * 2 1 3 5 5 H 1.08000 * 120.00131 * 245.37954 * 4 2 1 6 6 C 1.37882 * 119.99857 * 65.37662 * 4 2 1 7 7 N 1.31514 * 120.00102 * 184.90288 * 6 4 2 8 8 Si 1.86795 * 119.99950 * 5.17502 * 6 4 2 9 9 H 1.48493 * 109.47270 * 269.72359 * 8 6 4 10 10 H 1.48500 * 109.47231 * 29.72467 * 8 6 4 11 11 H 1.48512 * 109.47100 * 149.72403 * 8 6 4 12 12 N 1.46496 * 109.47161 * 120.00134 * 2 1 3 13 13 C 1.46502 * 120.00515 * 59.99768 * 12 2 1 14 14 C 1.34782 * 119.99770 * 240.00343 * 12 2 1 15 15 O 1.21279 * 120.00159 * 359.97438 * 14 12 2 16 16 C 1.50704 * 119.99848 * 179.97438 * 14 12 2 17 17 C 1.53001 * 109.46946 * 179.97438 * 16 14 12 18 18 C 1.53003 * 109.46876 * 180.02562 * 17 16 14 19 19 N 1.46502 * 109.46644 * 180.02562 * 18 17 16 20 20 C 1.34778 * 119.99520 * 179.97438 * 19 18 17 21 21 O 1.21277 * 120.00297 * 0.02562 * 20 19 18 22 22 C 1.50707 * 120.00010 * 179.97438 * 20 19 18 23 23 C 1.53000 * 117.49777 * 248.62566 * 22 20 19 24 24 C 1.53000 * 117.50099 * 180.02562 * 22 20 19 25 25 H 1.09004 * 109.47390 * 174.90255 * 1 2 3 26 26 H 1.08998 * 109.47541 * 294.89955 * 1 2 3 27 27 H 1.08997 * 109.47518 * 54.90599 * 1 2 3 28 28 H 0.97000 * 119.99814 * 355.27029 * 7 6 4 29 29 H 1.09001 * 109.46676 * 89.99570 * 13 12 2 30 30 H 1.08990 * 109.47417 * 209.99955 * 13 12 2 31 31 H 1.08996 * 109.46736 * 330.00571 * 13 12 2 32 32 H 1.08994 * 109.47322 * 299.99846 * 16 14 12 33 33 H 1.09005 * 109.47149 * 59.99695 * 16 14 12 34 34 H 1.08994 * 109.47531 * 300.00387 * 17 16 14 35 35 H 1.09005 * 109.46899 * 60.00211 * 17 16 14 36 36 H 1.09004 * 109.46704 * 300.00015 * 18 17 16 37 37 H 1.08991 * 109.47160 * 60.00464 * 18 17 16 38 38 H 0.96995 * 120.00517 * 0.02562 * 19 18 17 39 39 H 1.09000 * 115.54635 * 34.32523 * 22 20 19 40 40 H 1.09000 * 117.50012 * 359.97438 * 23 22 20 41 41 H 1.08999 * 117.49826 * 145.02089 * 23 22 20 42 42 H 1.08999 * 117.49586 * 214.97753 * 24 22 20 43 43 H 1.08999 * 117.49348 * 359.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5797 -1.6364 -1.1337 6 6 1.7931 -0.1782 -2.4797 7 7 2.1460 -0.8448 -3.5570 8 14 0.9745 1.4930 -2.6418 9 1 -0.4983 1.3179 -2.7139 10 1 1.3165 2.3282 -1.4625 11 1 1.4547 2.1616 -3.8779 12 7 2.0183 -0.6906 1.1961 13 6 1.6644 -2.0932 1.4281 14 6 2.7931 -0.0355 2.0833 15 8 3.0864 1.1254 1.8912 16 6 3.2950 -0.7458 3.3141 17 6 4.1456 0.2157 4.1466 18 6 4.6556 -0.5056 5.3958 19 7 5.4695 0.4153 6.1931 20 6 6.0270 -0.0040 7.3464 21 8 5.8552 -1.1437 7.7238 22 6 6.8647 0.9430 8.1664 23 6 8.3666 0.6641 8.2525 24 6 7.4705 0.4069 9.4651 25 1 -0.3634 -1.0236 -0.0913 26 1 -0.3634 0.4327 0.9321 27 1 -0.3634 0.5908 -0.8408 28 1 2.6357 -1.6779 -3.4731 29 1 2.4157 -2.7377 0.9716 30 1 1.6238 -2.2852 2.5001 31 1 0.6905 -2.3002 0.9847 32 1 2.4471 -1.0880 3.9073 33 1 3.9004 -1.6025 3.0178 34 1 4.9935 0.5576 3.5532 35 1 3.5404 1.0725 4.4429 36 1 3.8078 -0.8478 5.9893 37 1 5.2608 -1.3621 5.0991 38 1 5.6067 1.3269 5.8915 39 1 6.5461 1.9853 8.1521 40 1 8.7487 -0.2046 7.7164 41 1 9.0364 1.5230 8.2948 42 1 7.5505 1.0966 10.3054 43 1 7.2627 -0.6307 9.7265 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103442158.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:19 Heat of formation + Delta-G solvation = -59.360435 kcal Electronic energy + Delta-G solvation = -21742.643749 eV Core-core repulsion = 18402.402478 eV Total energy + Delta-G solvation = -3340.241271 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.17363 -39.32477 -36.79101 -35.81967 -35.29647 -33.08041 -32.46739 -30.31765 -27.42906 -26.26460 -24.80826 -24.25272 -22.79683 -22.12748 -20.84646 -20.06272 -18.30215 -17.71620 -17.56579 -16.61674 -16.13636 -16.04763 -15.44601 -15.24172 -14.91278 -14.39570 -14.01489 -13.70415 -13.01943 -12.90484 -12.87350 -12.80262 -12.37052 -12.09246 -11.95860 -11.91548 -11.70341 -11.64480 -11.34408 -11.31254 -11.00831 -10.92445 -10.85355 -10.55800 -10.10401 -10.06058 -9.74336 -9.29190 -9.14361 -8.89490 -8.51866 -7.82019 -6.48182 -4.17517 2.24546 2.86225 3.23189 3.33335 3.45322 3.50892 3.57870 3.79421 4.34642 4.42883 4.44087 4.51532 4.70162 4.80005 4.92469 5.00783 5.21311 5.22040 5.31532 5.38584 5.40842 5.52763 5.55985 5.59604 5.72372 5.75338 5.92481 6.05866 6.11471 6.18029 6.25262 6.27630 6.33029 6.50911 6.85919 7.12674 7.26368 7.38502 7.81438 7.98965 8.24674 8.33281 8.73811 8.92064 9.52938 10.89276 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.035850 B = 0.002683 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.839147 B =10434.362831 C =10646.292920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.226 3.774 3 H 0.062 0.938 4 C -0.601 4.601 5 H 0.060 0.940 6 C 0.031 3.969 7 N -0.909 5.909 8 Si 1.050 2.950 9 H -0.282 1.282 10 H -0.275 1.275 11 H -0.288 1.288 12 N -0.588 5.588 13 C 0.087 3.913 14 C 0.504 3.496 15 O -0.556 6.556 16 C -0.135 4.135 17 C -0.115 4.115 18 C 0.118 3.882 19 N -0.724 5.724 20 C 0.541 3.459 21 O -0.544 6.544 22 C -0.197 4.197 23 C -0.153 4.153 24 C -0.149 4.149 25 H 0.053 0.947 26 H 0.030 0.970 27 H 0.053 0.947 28 H 0.267 0.733 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.404 0.596 39 H 0.124 0.876 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.161 2.221 22.040 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.124 3.876 3 H 0.080 0.920 4 C -0.640 4.640 5 H 0.078 0.922 6 C -0.174 4.174 7 N -0.543 5.543 8 Si 0.880 3.120 9 H -0.209 1.209 10 H -0.201 1.201 11 H -0.214 1.214 12 N -0.319 5.319 13 C -0.056 4.056 14 C 0.291 3.709 15 O -0.436 6.436 16 C -0.176 4.176 17 C -0.153 4.153 18 C -0.005 4.005 19 N -0.376 5.376 20 C 0.327 3.673 21 O -0.421 6.421 22 C -0.218 4.218 23 C -0.190 4.190 24 C -0.186 4.186 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.238 0.762 39 H 0.142 0.858 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.575 3.064 21.052 21.992 hybrid contribution 0.524 -0.891 0.746 1.274 sum 6.099 2.174 21.798 22.739 Atomic orbital electron populations 1.22406 0.99057 1.01096 0.99127 1.19395 0.90129 0.95298 0.82738 0.92025 1.22251 1.40096 1.10579 0.91057 0.92155 1.25713 0.96475 1.03413 0.91780 1.70826 1.36494 1.16802 1.30191 0.83929 0.76196 0.75783 0.76131 1.20944 1.20056 1.21420 1.47965 1.49160 1.11754 1.23037 1.21576 1.01662 0.82868 0.99533 1.20396 0.79002 0.87085 0.84414 1.90635 1.58458 1.17301 1.77184 1.21560 1.00806 0.99647 0.95596 1.21510 1.00636 0.98554 0.94606 1.21433 0.94733 0.92616 0.91747 1.45947 1.52345 1.16237 1.23021 1.19675 0.79224 0.87662 0.80741 1.90696 1.61040 1.19822 1.70555 1.22213 0.96758 1.00333 1.02463 1.22941 0.90234 1.03907 1.01938 1.22946 1.01481 1.03408 0.90750 0.92839 0.95061 0.92862 0.92284 0.93136 0.92561 0.90935 0.89140 0.89048 0.90379 0.90497 0.91363 0.91328 0.76189 0.85780 0.88208 0.87704 0.87908 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 8.65 37.16 0.32 -3.05 16 2 C 0.23 5.45 2.21 -69.09 -0.15 5.30 16 3 H 0.06 1.65 5.40 -51.93 -0.28 1.37 16 4 C -0.60 -16.58 8.77 -34.44 -0.30 -16.88 16 5 H 0.06 1.77 7.74 -52.49 -0.41 1.37 16 6 C 0.03 0.89 5.43 -17.82 -0.10 0.80 16 7 N -0.91 -27.67 13.70 55.43 0.76 -26.91 16 8 Si 1.05 25.59 25.28 -169.99 -4.30 21.29 16 9 H -0.28 -6.42 6.82 56.52 0.39 -6.03 16 10 H -0.27 -6.48 6.35 56.52 0.36 -6.12 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 N -0.59 -11.95 2.75 -175.27 -0.48 -12.43 16 13 C 0.09 1.40 9.43 59.85 0.56 1.97 16 14 C 0.50 9.63 7.67 -10.98 -0.08 9.55 16 15 O -0.56 -12.67 15.31 5.56 0.09 -12.59 16 16 C -0.14 -1.77 4.25 -27.88 -0.12 -1.88 16 17 C -0.11 -1.34 4.62 -26.73 -0.12 -1.46 16 18 C 0.12 1.24 5.67 -4.04 -0.02 1.21 16 19 N -0.72 -6.97 5.56 -60.29 -0.33 -7.31 16 20 C 0.54 5.98 7.61 -10.98 -0.08 5.89 16 21 O -0.54 -8.08 16.26 5.56 0.09 -7.99 16 22 C -0.20 -1.53 6.19 -91.77 -0.57 -2.09 16 23 C -0.15 -1.02 10.23 -26.75 -0.27 -1.29 16 24 C -0.15 -1.07 10.04 -26.75 -0.27 -1.34 16 25 H 0.05 1.08 6.88 -51.93 -0.36 0.72 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 1.15 4.41 -51.93 -0.23 0.92 16 28 H 0.27 8.08 8.72 -40.82 -0.36 7.73 16 29 H 0.05 0.83 8.09 -51.93 -0.42 0.41 16 30 H 0.06 0.68 6.44 -51.93 -0.33 0.34 16 31 H 0.07 1.17 6.53 -51.93 -0.34 0.83 16 32 H 0.09 0.98 7.40 -51.93 -0.38 0.60 16 33 H 0.09 1.09 8.11 -51.93 -0.42 0.67 16 34 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 35 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.40 2.98 8.47 -40.82 -0.35 2.64 16 39 H 0.12 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.11 0.95 7.67 -51.93 -0.40 0.55 16 LS Contribution 348.98 15.07 5.26 5.26 Total: -1.00 -34.89 348.98 -7.06 -41.95 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -6.93 Total: 2.02 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -1.21 Total: -3.29 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.06 Total: -46.65 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.18 Total: -20.58 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -4.30 Total: 21.29 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.89 -7.06 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103442158.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.408 kcal (2) G-P(sol) polarization free energy of solvation -34.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds