Wall clock time and date at job start Tue Mar 31 2020 05:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47293 * 2 1 4 4 C 1.46499 * 120.00464 * 94.47302 * 3 2 1 5 5 C 1.50697 * 109.47272 * 87.71381 * 4 3 2 6 6 H 1.07998 * 120.00163 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99917 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99722 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99931 * 0.02562 * 7 5 4 10 10 H 1.48496 * 109.47287 * 90.00132 * 9 7 5 11 11 H 1.48494 * 109.47166 * 329.99759 * 9 7 5 12 12 H 1.48504 * 109.46750 * 209.99770 * 9 7 5 13 13 C 1.34783 * 119.99830 * 274.47400 * 3 2 1 14 14 O 1.21275 * 120.00015 * 5.00096 * 13 3 2 15 15 C 1.50705 * 119.99870 * 185.00617 * 13 3 2 16 16 H 1.08998 * 109.49575 * 328.17199 * 15 13 3 17 17 C 1.53037 * 109.49710 * 208.11000 * 15 13 3 18 18 C 1.53035 * 109.54187 * 178.71546 * 17 15 13 19 19 C 1.53194 * 109.34165 * 61.31394 * 18 17 15 20 20 N 1.46931 * 108.77301 * 305.38756 * 19 18 17 21 21 C 1.34780 * 120.62579 * 233.62909 * 20 19 18 22 22 C 1.50697 * 119.99848 * 5.56617 * 21 20 19 23 23 O 1.21279 * 119.99783 * 185.56773 * 21 20 19 24 24 C 1.46917 * 118.74297 * 53.60456 * 20 19 18 25 25 H 1.09007 * 109.46747 * 295.05943 * 1 2 3 26 26 H 1.09000 * 109.47171 * 55.05709 * 1 2 3 27 27 H 1.09002 * 109.47320 * 175.05830 * 1 2 3 28 28 H 1.09007 * 109.47056 * 240.00111 * 2 1 3 29 29 H 1.08999 * 109.47130 * 120.00212 * 2 1 3 30 30 H 1.09003 * 109.46431 * 327.71574 * 4 3 2 31 31 H 1.08996 * 109.47285 * 207.71974 * 4 3 2 32 32 H 0.97002 * 119.99746 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.45794 * 298.70611 * 17 15 13 34 34 H 1.09003 * 109.45977 * 58.65685 * 17 15 13 35 35 H 1.09004 * 109.46648 * 301.36252 * 18 17 15 36 36 H 1.09001 * 109.52658 * 181.30173 * 18 17 15 37 37 H 1.08996 * 109.58510 * 185.59767 * 19 18 17 38 38 H 1.08998 * 109.58227 * 65.16678 * 19 18 17 39 39 H 1.08998 * 109.47765 * 4.57940 * 22 21 20 40 40 H 1.09005 * 109.46784 * 124.58753 * 22 21 20 41 41 H 1.09006 * 109.46832 * 244.58151 * 22 21 20 42 42 H 1.08998 * 109.59144 * 186.60738 * 24 20 19 43 43 H 1.08999 * 109.59086 * 66.17727 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3558 2.0389 1.2648 5 6 3.7917 1.7456 1.6160 6 1 4.3928 1.1311 0.9623 7 6 4.3378 2.2618 2.7720 8 7 5.5908 2.0054 3.0788 9 14 3.2978 3.3240 3.9031 10 1 2.6179 2.4631 4.9040 11 1 2.2801 4.0507 3.1023 12 1 4.1688 4.3027 4.6022 13 6 2.1571 2.0469 -1.1637 14 8 1.7930 1.5361 -2.2016 15 6 2.7650 3.4258 -1.1751 16 1 2.5192 3.9394 -0.2456 17 6 2.2089 4.2194 -2.3596 18 6 2.8011 5.6305 -2.3537 19 6 4.3233 5.5425 -2.5017 20 7 4.8506 4.6622 -1.4501 21 6 5.8326 5.0849 -0.6293 22 6 6.3134 6.5113 -0.7019 23 8 6.3292 4.3173 0.1675 24 6 4.2868 3.3128 -1.3098 25 1 -0.3633 0.4353 0.9310 26 1 -0.3633 0.5886 -0.8424 27 1 -0.3634 -1.0239 -0.0885 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.7047 1.6637 2.0544 31 1 2.2194 3.1154 1.1623 32 1 5.9751 2.3688 3.8919 33 1 2.4757 3.7180 -3.2899 34 1 1.1235 4.2802 -2.2785 35 1 2.5549 6.1238 -1.4133 36 1 2.3872 6.2028 -3.1839 37 1 4.7585 6.5365 -2.3985 38 1 4.5720 5.1321 -3.4804 39 1 5.7003 7.0658 -1.4123 40 1 6.2348 6.9717 0.2830 41 1 7.3531 6.5280 -1.0289 42 1 4.6978 2.8356 -0.4202 43 1 4.5325 2.7206 -2.1913 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111661807.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:39 Heat of formation + Delta-G solvation = -67.246475 kcal Electronic energy + Delta-G solvation = -24154.431301 eV Core-core repulsion = 20813.848066 eV Total energy + Delta-G solvation = -3340.583236 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13079 -38.93363 -36.70570 -35.27319 -32.94908 -32.47486 -31.48008 -30.38128 -29.09018 -27.53008 -24.99675 -24.05211 -22.57986 -22.34182 -20.72737 -18.65344 -18.08972 -16.98039 -16.75264 -16.36322 -15.58307 -15.55784 -14.97947 -14.55869 -14.14222 -13.94747 -13.57992 -13.45204 -13.10055 -13.00962 -12.91747 -12.51230 -12.30159 -12.13720 -11.93123 -11.87321 -11.67337 -11.65203 -11.17122 -10.94979 -10.77749 -10.68561 -10.57002 -10.44022 -10.23085 -10.04370 -9.49141 -9.33082 -8.98895 -8.56169 -8.24071 -7.74239 -6.06977 -4.08172 3.04317 3.22465 3.23199 3.29371 3.32330 3.50318 3.86129 4.36366 4.78069 4.86401 4.99946 5.10651 5.21809 5.24040 5.34494 5.42877 5.54619 5.58686 5.59423 5.71345 5.76029 5.78984 5.83666 5.94288 5.99055 6.05324 6.17781 6.22163 6.23182 6.36669 6.46035 6.56240 6.61414 6.75591 6.81705 6.88564 7.36446 7.54238 7.83827 8.15584 8.49589 8.69700 8.88440 8.98289 9.51391 11.05317 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.009496 C = 0.006029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.950460 B = 2947.974954 C = 4643.443022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 N -0.587 5.587 4 C 0.208 3.792 5 C -0.544 4.544 6 H 0.079 0.921 7 C 0.087 3.913 8 N -0.873 5.873 9 Si 0.865 3.135 10 H -0.276 1.276 11 H -0.267 1.267 12 H -0.284 1.284 13 C 0.525 3.475 14 O -0.569 6.569 15 C -0.116 4.116 16 H 0.097 0.903 17 C -0.102 4.102 18 C -0.134 4.134 19 C 0.101 3.899 20 N -0.614 5.614 21 C 0.498 3.502 22 C -0.177 4.177 23 O -0.506 6.506 24 C 0.121 3.879 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.027 0.973 31 H 0.032 0.968 32 H 0.264 0.736 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.132 0.868 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.394 8.711 -9.092 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.007 4.007 3 N -0.317 5.317 4 C 0.087 3.913 5 C -0.582 4.582 6 H 0.097 0.903 7 C -0.118 4.118 8 N -0.509 5.509 9 Si 0.692 3.308 10 H -0.201 1.201 11 H -0.192 1.192 12 H -0.210 1.210 13 C 0.312 3.688 14 O -0.450 6.450 15 C -0.138 4.138 16 H 0.115 0.885 17 C -0.140 4.140 18 C -0.173 4.173 19 C -0.022 4.022 20 N -0.350 5.350 21 C 0.286 3.714 22 C -0.236 4.236 23 O -0.379 6.379 24 C -0.002 4.002 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.044 0.956 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.150 0.850 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.122 8.042 -8.994 13.107 hybrid contribution -0.541 0.679 0.832 1.203 sum -5.663 8.721 -8.162 13.219 Atomic orbital electron populations 1.22114 0.96928 1.01372 1.01749 1.21263 0.93261 0.83419 1.02752 1.47995 1.62740 1.13358 1.07598 1.19876 0.97426 0.92987 0.81031 1.21198 0.94351 1.34342 1.08327 0.90283 1.24780 0.94543 0.95331 0.97154 1.69869 1.12503 1.43724 1.24783 0.87037 0.80700 0.81262 0.81762 1.20140 1.19232 1.20982 1.20232 0.78136 0.87270 0.83156 1.90583 1.52039 1.69988 1.32373 1.21614 0.97031 0.94323 1.00856 0.88461 1.21377 0.99893 0.94350 0.98380 1.21939 0.95283 0.97583 1.02469 1.21854 0.94188 0.94957 0.91161 1.48101 1.37694 1.15475 1.33682 1.20759 0.79845 0.90317 0.80524 1.22022 1.02979 0.94057 1.04581 1.90930 1.54869 1.56076 1.36070 1.21615 0.90373 0.83062 1.05110 0.92938 0.92592 0.92349 0.91217 0.90045 0.95553 0.95051 0.92534 0.90875 0.91863 0.91466 0.90763 0.89356 0.91540 0.90345 0.89099 0.89270 0.84999 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 10.21 37.16 0.38 -2.16 16 2 C 0.12 2.14 6.05 -4.04 -0.02 2.11 16 3 N -0.59 -12.20 2.46 -175.06 -0.43 -12.63 16 4 C 0.21 4.69 4.02 -5.20 -0.02 4.67 16 5 C -0.54 -14.55 8.28 -34.44 -0.29 -14.83 16 6 H 0.08 2.37 7.82 -52.49 -0.41 1.96 16 7 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 8 N -0.87 -26.38 13.96 55.43 0.77 -25.61 16 9 Si 0.87 20.69 27.47 -169.99 -4.67 16.02 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 13 C 0.52 10.72 6.71 -10.98 -0.07 10.65 16 14 O -0.57 -12.40 15.88 5.56 0.09 -12.31 16 15 C -0.12 -2.11 2.12 -91.65 -0.19 -2.31 16 16 H 0.10 1.87 5.84 -51.93 -0.30 1.57 16 17 C -0.10 -1.48 4.72 -26.69 -0.13 -1.61 16 18 C -0.13 -1.51 6.08 -26.61 -0.16 -1.67 16 19 C 0.10 1.16 6.36 -3.71 -0.02 1.13 16 20 N -0.61 -10.05 2.97 -172.77 -0.51 -10.56 16 21 C 0.50 8.98 7.80 -10.99 -0.09 8.89 16 22 C -0.18 -2.13 10.09 36.00 0.36 -1.77 16 23 O -0.51 -12.30 16.54 5.56 0.09 -12.21 16 24 C 0.12 2.34 5.68 -3.71 -0.02 2.32 16 25 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.30 7.64 -51.93 -0.40 0.90 16 29 H 0.08 1.48 8.04 -51.93 -0.42 1.07 16 30 H 0.03 0.58 7.52 -51.93 -0.39 0.19 16 31 H 0.03 0.71 4.86 -51.93 -0.25 0.46 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.07 1.10 7.90 -51.93 -0.41 0.69 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 0.76 5.05 -51.93 -0.26 0.50 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.08 0.69 5.15 -51.93 -0.27 0.42 16 40 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.13 3.20 4.99 -51.93 -0.26 2.94 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 338.15 15.07 5.10 5.10 Total: -1.00 -33.57 338.15 -6.70 -40.27 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -6.76 Total: 4.16 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -0.37 Total: 7.77 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -0.17 Total: -48.80 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: 0.18 Total: -24.52 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.67 Total: 16.02 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.57 -6.70 -40.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111661807.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.979 kcal (2) G-P(sol) polarization free energy of solvation -33.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds