Wall clock time and date at job start Tue Mar 31 2020 05:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46507 * 109.46732 * 2 1 4 4 C 1.46496 * 120.00214 * 274.31368 * 3 2 1 5 5 C 1.50697 * 109.47440 * 269.73291 * 4 3 2 6 6 H 1.07994 * 120.00074 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00201 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00070 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99769 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.46933 * 89.99865 * 9 7 5 11 11 H 1.48492 * 109.46889 * 209.99764 * 9 7 5 12 12 H 1.48497 * 109.47245 * 330.00310 * 9 7 5 13 13 C 1.34780 * 119.99835 * 94.32185 * 3 2 1 14 14 O 1.21279 * 119.99732 * 3.75688 * 13 3 2 15 15 C 1.50701 * 119.99740 * 183.75874 * 13 3 2 16 16 H 1.08997 * 109.49537 * 35.00425 * 15 13 3 17 17 C 1.53036 * 109.49635 * 155.10521 * 15 13 3 18 18 C 1.53041 * 109.53755 * 181.31171 * 17 15 13 19 19 C 1.53188 * 109.31739 * 298.63544 * 18 17 15 20 20 N 1.47211 * 108.85143 * 54.64686 * 19 18 17 21 21 C 1.34770 * 120.80984 * 126.34058 * 20 19 18 22 22 C 1.50701 * 120.00422 * 5.11825 * 21 20 19 23 23 O 1.21281 * 120.00077 * 185.11939 * 21 20 19 24 24 C 1.46923 * 118.55862 * 306.47910 * 20 19 18 25 25 H 1.09003 * 109.47381 * 64.99203 * 1 2 3 26 26 H 1.08999 * 109.47313 * 184.99400 * 1 2 3 27 27 H 1.09004 * 109.47449 * 304.99056 * 1 2 3 28 28 H 1.09001 * 109.46971 * 240.00551 * 2 1 3 29 29 H 1.09001 * 109.47125 * 119.99828 * 2 1 3 30 30 H 1.09007 * 109.47148 * 29.73049 * 4 3 2 31 31 H 1.09000 * 109.47022 * 149.72519 * 4 3 2 32 32 H 0.97003 * 119.99599 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.46183 * 301.33572 * 17 15 13 34 34 H 1.09005 * 109.45866 * 61.30713 * 17 15 13 35 35 H 1.09001 * 109.49480 * 58.58991 * 18 17 15 36 36 H 1.09001 * 109.49565 * 178.68224 * 18 17 15 37 37 H 1.08998 * 109.58841 * 174.41967 * 19 18 17 38 38 H 1.08998 * 109.58185 * 294.70905 * 19 18 17 39 39 H 1.08999 * 109.47180 * 84.13093 * 22 21 20 40 40 H 1.08997 * 109.47864 * 204.13126 * 22 21 20 41 41 H 1.09008 * 109.46907 * 324.13571 * 22 21 20 42 42 H 1.09004 * 109.59032 * 293.68583 * 24 20 19 43 43 H 1.08998 * 109.58738 * 173.39844 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1724 2.1038 -1.2651 5 6 3.5631 1.8847 -1.8025 6 1 4.2624 1.2693 -1.2561 7 6 3.9428 2.4700 -2.9917 8 7 5.1567 2.2792 -3.4605 9 14 2.7330 3.5340 -3.9372 10 1 2.8593 4.9444 -3.4896 11 1 3.0279 3.4474 -5.3899 12 1 1.3501 3.0562 -3.6834 13 6 2.3257 1.9873 1.1639 14 8 2.2635 1.3682 2.2049 15 6 2.7468 3.4343 1.1718 16 1 2.1998 3.9765 0.4005 17 6 2.4434 4.0471 2.5408 18 6 2.8405 5.5251 2.5393 19 6 4.3453 5.6453 2.2786 20 7 4.6706 4.9318 1.0327 21 6 5.3367 5.5496 0.0373 22 6 5.8590 6.9493 0.2352 23 8 5.5159 4.9792 -1.0179 24 6 4.2506 3.5306 0.8955 25 1 -0.3634 0.4344 -0.9313 26 1 -0.3634 -1.0237 0.0895 27 1 -0.3634 0.5893 0.8419 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.4422 1.7348 -1.9855 31 1 2.0111 3.1686 -1.0973 32 1 5.4238 2.6914 -4.2970 33 1 1.3775 3.9577 2.7506 34 1 3.0101 3.5198 3.3083 35 1 2.2926 6.0482 1.7556 36 1 2.6026 5.9667 3.5071 37 1 4.6160 6.6963 2.1782 38 1 4.8963 5.2037 3.1090 39 1 6.8268 6.9088 0.7349 40 1 5.9705 7.4360 -0.7337 41 1 5.1573 7.5157 0.8477 42 1 4.7939 2.9144 1.6120 43 1 4.4591 3.1841 -0.1166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111661808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:41 Heat of formation + Delta-G solvation = -70.864586 kcal Electronic energy + Delta-G solvation = -24218.566243 eV Core-core repulsion = 20877.826114 eV Total energy + Delta-G solvation = -3340.740129 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.10238 -38.89451 -36.67507 -35.28657 -32.91336 -32.45984 -31.45932 -30.30564 -29.10434 -27.55205 -24.96757 -24.00410 -22.59359 -22.28683 -20.69666 -18.63729 -18.08518 -16.93113 -16.67425 -16.36636 -15.56384 -15.52802 -14.99065 -14.54489 -14.12903 -13.94795 -13.61580 -13.34043 -13.05478 -12.94570 -12.85897 -12.46056 -12.32928 -12.14448 -11.98837 -11.85353 -11.70038 -11.59922 -11.16817 -10.93168 -10.73293 -10.69501 -10.52840 -10.40402 -10.19800 -10.09350 -9.47297 -9.30902 -8.98630 -8.50892 -8.21456 -7.72348 -6.05184 -4.05623 3.08713 3.22124 3.30255 3.33690 3.38276 3.51434 3.86859 4.42120 4.82943 4.87179 5.01491 5.12935 5.26528 5.28381 5.34290 5.44145 5.50379 5.55762 5.60218 5.71450 5.75110 5.78933 5.81861 5.93732 5.98529 6.04785 6.20317 6.22534 6.24722 6.36946 6.47566 6.57211 6.61777 6.76913 6.89884 6.96649 7.38459 7.57060 7.87098 8.17306 8.51547 8.72404 8.89368 8.99103 9.54867 11.07491 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.011815 B = 0.009765 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.391853 B = 2866.788604 C = 4631.855479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.111 3.889 3 N -0.587 5.587 4 C 0.209 3.791 5 C -0.547 4.547 6 H 0.078 0.922 7 C 0.095 3.905 8 N -0.874 5.874 9 Si 0.866 3.134 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.525 3.475 14 O -0.571 6.571 15 C -0.114 4.114 16 H 0.093 0.907 17 C -0.101 4.101 18 C -0.134 4.134 19 C 0.104 3.896 20 N -0.615 5.615 21 C 0.495 3.505 22 C -0.173 4.173 23 O -0.502 6.502 24 C 0.110 3.890 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.027 0.973 32 H 0.265 0.735 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.641 8.043 10.195 13.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.012 4.012 3 N -0.317 5.317 4 C 0.088 3.912 5 C -0.585 4.585 6 H 0.096 0.904 7 C -0.111 4.111 8 N -0.510 5.510 9 Si 0.693 3.307 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.193 1.193 13 C 0.313 3.687 14 O -0.451 6.451 15 C -0.136 4.136 16 H 0.111 0.889 17 C -0.139 4.139 18 C -0.172 4.172 19 C -0.019 4.019 20 N -0.350 5.350 21 C 0.283 3.717 22 C -0.232 4.232 23 O -0.375 6.375 24 C -0.013 4.013 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.418 7.447 9.930 13.175 hybrid contribution -0.613 0.712 -0.622 1.127 sum -5.031 8.159 9.308 13.362 Atomic orbital electron populations 1.22119 0.96907 1.01352 1.01722 1.21282 0.93190 0.83681 1.03018 1.47984 1.62743 1.13545 1.07439 1.19852 0.98543 0.91804 0.81051 1.21143 0.96278 1.33612 1.07461 0.90420 1.24701 0.94647 0.95030 0.96680 1.69836 1.17620 1.42925 1.20597 0.87022 0.81798 0.82107 0.79766 1.19830 1.21108 1.19339 1.20239 0.76556 0.88674 0.83246 1.90579 1.55532 1.66774 1.32259 1.21576 0.99013 0.93937 0.99076 0.88877 1.21370 1.01633 0.94501 0.96430 1.21929 0.95992 0.97314 1.01974 1.21806 0.95709 0.97328 0.87041 1.48170 1.57313 1.13126 1.16440 1.20768 0.78800 0.88494 0.83687 1.21967 1.02301 0.94370 1.04594 1.90954 1.55341 1.66458 1.24769 1.21867 0.90889 0.80958 1.07540 0.92729 0.92237 0.92977 0.90279 0.90572 0.95130 0.95542 0.92516 0.91862 0.90855 0.91559 0.90742 0.89811 0.91578 0.89423 0.89376 0.90370 0.92359 0.83762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 10.24 37.15 0.38 -2.12 16 2 C 0.11 2.05 6.20 -4.04 -0.03 2.03 16 3 N -0.59 -12.29 2.46 -175.06 -0.43 -12.72 16 4 C 0.21 4.76 4.02 -5.20 -0.02 4.74 16 5 C -0.55 -14.73 7.54 -34.44 -0.26 -14.99 16 6 H 0.08 2.34 8.02 -52.49 -0.42 1.92 16 7 C 0.10 2.69 5.47 -17.82 -0.10 2.59 16 8 N -0.87 -26.48 13.96 55.43 0.77 -25.71 16 9 Si 0.87 21.22 27.47 -169.99 -4.67 16.55 16 10 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 13 C 0.53 10.84 6.78 -10.98 -0.07 10.77 16 14 O -0.57 -12.61 15.62 5.56 0.09 -12.52 16 15 C -0.11 -2.08 1.95 -91.65 -0.18 -2.26 16 16 H 0.09 1.76 6.16 -51.93 -0.32 1.44 16 17 C -0.10 -1.48 4.67 -26.69 -0.12 -1.61 16 18 C -0.13 -1.51 6.08 -26.61 -0.16 -1.68 16 19 C 0.10 1.20 6.32 -3.56 -0.02 1.18 16 20 N -0.61 -10.17 2.98 -172.54 -0.51 -10.69 16 21 C 0.50 8.97 7.80 -10.99 -0.09 8.88 16 22 C -0.17 -2.08 9.56 36.01 0.34 -1.73 16 23 O -0.50 -12.24 16.52 5.56 0.09 -12.15 16 24 C 0.11 2.16 5.65 -3.71 -0.02 2.14 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 29 H 0.08 1.42 7.25 -51.93 -0.38 1.04 16 30 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 31 H 0.03 0.61 5.26 -51.93 -0.27 0.33 16 32 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.12 7.92 -51.93 -0.41 0.70 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.73 5.41 -51.93 -0.28 0.45 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.08 0.71 6.09 -51.92 -0.32 0.39 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.14 3.54 4.22 -51.93 -0.22 3.32 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -33.62 337.34 -6.73 -40.35 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.80 Total: 3.86 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -0.35 Total: 7.95 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.17 Total: -49.12 kcal Atomic # 8 Polarization: -24.85 SS G_CDS: 0.18 Total: -24.67 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.67 Total: 16.55 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.62 -6.73 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111661808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.517 kcal (2) G-P(sol) polarization free energy of solvation -33.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds