Wall clock time and date at job start Tue Mar 31 2020 06:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.46892 * 2 1 4 4 C 1.34775 * 120.00299 * 179.97438 * 3 2 1 5 5 O 1.21280 * 119.99439 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00377 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.46970 * 180.02562 * 6 4 3 8 8 C 1.50701 * 109.46647 * 179.97438 * 7 6 4 9 9 O 1.21285 * 120.00477 * 353.53456 * 8 7 6 10 10 N 1.34780 * 119.99602 * 173.53048 * 8 7 6 11 11 C 1.37101 * 120.00100 * 356.29876 * 10 8 7 12 12 H 1.07998 * 119.99801 * 232.08443 * 11 10 8 13 13 C 1.38947 * 120.00241 * 52.08180 * 11 10 8 14 14 N 1.31420 * 119.99839 * 26.90302 * 13 11 10 15 15 Si 1.86793 * 120.00235 * 206.89998 * 13 11 10 16 16 H 1.48497 * 109.46929 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47140 * 119.99915 * 15 13 11 18 18 H 1.48503 * 109.47465 * 240.00081 * 15 13 11 19 19 C 1.46502 * 120.00129 * 176.01533 * 10 8 7 20 20 C 1.54263 * 110.03471 * 237.91435 * 19 10 8 21 21 C 1.54966 * 104.15914 * 217.13397 * 20 19 10 22 22 C 1.54888 * 102.77591 * 37.88620 * 21 20 19 23 23 C 1.53869 * 110.03377 * 120.69142 * 19 10 8 24 24 H 1.09001 * 109.47264 * 60.00300 * 1 2 3 25 25 H 1.09006 * 109.46898 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47740 * 300.00119 * 1 2 3 27 27 H 1.08992 * 109.47308 * 239.99564 * 2 1 3 28 28 H 1.09003 * 109.46431 * 119.99320 * 2 1 3 29 29 H 0.97002 * 120.00221 * 359.97438 * 3 2 1 30 30 H 1.08992 * 109.46925 * 60.00021 * 6 4 3 31 31 H 1.09001 * 109.46943 * 300.00536 * 6 4 3 32 32 H 1.08992 * 109.47308 * 59.99639 * 7 6 4 33 33 H 1.08995 * 109.46591 * 299.99730 * 7 6 4 34 34 H 0.97000 * 119.99590 * 184.88523 * 14 13 11 35 35 H 1.09008 * 110.01179 * 359.30480 * 19 10 8 36 36 H 1.09005 * 110.48668 * 335.78364 * 20 19 10 37 37 H 1.08998 * 110.48778 * 98.42576 * 20 19 10 38 38 H 1.08996 * 110.71788 * 279.57375 * 21 20 19 39 39 H 1.08998 * 110.92184 * 156.29402 * 21 20 19 40 40 H 1.09002 * 110.48764 * 203.40134 * 22 21 20 41 41 H 1.09002 * 110.59648 * 80.81910 * 22 21 20 42 42 H 1.08999 * 110.03990 * 238.57245 * 23 19 10 43 43 H 1.09005 * 110.03369 * 0.02562 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3433 1.6276 0.0005 5 8 4.1314 0.7058 0.0005 6 6 3.8456 3.0484 -0.0001 7 6 5.3756 3.0484 0.0001 8 6 5.8778 4.4693 -0.0012 9 8 5.0960 5.3888 -0.1203 10 7 7.1959 4.7182 0.1303 11 6 8.0712 3.6841 0.3410 12 1 8.7662 3.7248 1.1666 13 6 8.0639 2.5838 -0.5075 14 7 7.6556 2.7147 -1.7497 15 14 8.6347 0.9187 0.1175 16 1 9.0408 1.0369 1.5409 17 1 7.5251 -0.0612 -0.0005 18 1 9.7914 0.4563 -0.6910 19 6 7.6942 6.0930 0.0417 20 6 8.7377 6.2051 -1.0890 21 6 9.7921 7.1963 -0.5347 22 6 9.8715 6.8099 0.9631 23 6 8.4144 6.4777 1.3458 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5139 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 1.3879 2.1185 -0.0004 30 1 3.4818 3.5627 0.8894 31 1 3.4826 3.5617 -0.8905 32 1 5.7390 2.5342 -0.8896 33 1 5.7388 2.5350 0.8903 34 1 7.5831 1.9343 -2.3212 35 1 6.8671 6.7783 -0.1442 36 1 9.1930 5.2344 -1.2855 37 1 8.2783 6.6023 -1.9941 38 1 9.4523 8.2254 -0.6506 39 1 10.7561 7.0520 -1.0225 40 1 10.2396 7.6483 1.5544 41 1 10.5104 5.9375 1.1007 42 1 7.9376 7.3502 1.7925 43 1 8.3937 5.6413 2.0446 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128278042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:30 Heat of formation + Delta-G solvation = -90.450649 kcal Electronic energy + Delta-G solvation = -23161.286549 eV Core-core repulsion = 19819.697105 eV Total energy + Delta-G solvation = -3341.589444 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.45447 -38.75547 -36.66405 -35.10357 -34.06548 -32.12423 -31.26052 -30.20202 -27.90512 -27.17954 -25.09357 -24.22410 -22.43894 -20.29141 -19.95188 -19.25173 -19.14239 -17.04944 -15.89339 -15.85303 -15.62559 -15.54388 -15.03921 -14.64092 -14.39069 -14.15447 -13.52761 -13.35004 -13.05295 -12.65557 -12.57913 -12.20086 -12.11688 -11.90131 -11.55735 -11.43899 -11.38380 -11.06067 -10.82649 -10.61824 -10.51855 -10.43488 -10.31635 -10.26628 -10.15398 -9.93413 -9.60054 -9.38902 -8.88368 -8.66125 -8.21424 -7.26833 -6.33940 -4.12864 3.07136 3.25187 3.37231 3.42485 3.43720 4.12390 4.25570 4.83917 4.92450 4.93383 5.00128 5.22934 5.33244 5.41257 5.42027 5.60173 5.70483 5.82001 5.88463 5.92058 6.00091 6.12310 6.26521 6.31559 6.36650 6.38680 6.44620 6.54776 6.58800 6.62787 6.70462 6.78059 6.93567 6.96878 7.15796 7.30861 7.38920 7.52879 7.73856 8.07634 8.59668 8.70774 9.00009 9.65740 10.08636 10.66868 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020334 B = 0.005025 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.649849 B = 5571.305994 C = 6518.018284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.113 3.887 3 N -0.741 5.741 4 C 0.511 3.489 5 O -0.535 6.535 6 C -0.123 4.123 7 C -0.113 4.113 8 C 0.509 3.491 9 O -0.620 6.620 10 N -0.443 5.443 11 C -0.341 4.341 12 H 0.082 0.918 13 C 0.061 3.939 14 N -0.844 5.844 15 Si 0.889 3.111 16 H -0.267 1.267 17 H -0.267 1.267 18 H -0.284 1.284 19 C 0.131 3.869 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.127 4.127 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.399 0.601 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.083 0.917 34 H 0.269 0.731 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.051 0.949 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.946 -0.238 2.914 7.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.011 4.011 3 N -0.396 5.396 4 C 0.298 3.702 5 O -0.410 6.410 6 C -0.163 4.163 7 C -0.153 4.153 8 C 0.300 3.700 9 O -0.507 6.507 10 N -0.162 5.162 11 C -0.469 4.469 12 H 0.100 0.900 13 C -0.147 4.147 14 N -0.479 5.479 15 Si 0.714 3.286 16 H -0.192 1.192 17 H -0.192 1.192 18 H -0.210 1.210 19 C 0.027 3.973 20 C -0.159 4.159 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.165 4.165 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.233 0.767 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.134 0.866 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.111 0.889 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.070 0.930 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.682 -0.558 2.669 7.217 hybrid contribution -0.013 -0.656 0.081 0.661 sum -6.695 -1.213 2.750 7.339 Atomic orbital electron populations 1.21994 0.94802 1.02865 1.02419 1.21224 0.93833 0.83840 1.02168 1.46136 1.07578 1.08343 1.77502 1.21131 0.81601 0.92516 0.74903 1.90711 1.55161 1.46782 1.48370 1.21450 0.98885 0.91506 1.04454 1.21433 0.91066 0.96282 1.06539 1.20310 0.82307 0.90071 0.77343 1.90469 1.56100 1.47215 1.56952 1.43434 1.04524 1.04555 1.63695 1.19120 1.19810 0.96531 1.11392 0.90004 1.25428 0.95661 1.00320 0.93264 1.70129 1.43377 1.30521 1.03830 0.86495 0.78841 0.83754 0.79483 1.19163 1.19175 1.21020 1.21583 0.95681 0.86716 0.93291 1.22599 0.95887 1.00395 0.97013 1.22451 0.98969 0.98679 0.95978 1.22255 0.97190 1.00063 0.95892 1.22398 0.95008 1.00420 0.98685 0.92040 0.91115 0.92071 0.91819 0.91838 0.76722 0.89372 0.88871 0.86634 0.89880 0.92052 0.90548 0.88930 0.93195 0.92640 0.92468 0.93056 0.91689 0.93032 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 10.03 37.16 0.37 -0.93 16 2 C 0.11 1.34 6.39 -4.04 -0.03 1.31 16 3 N -0.74 -9.98 5.56 -60.30 -0.33 -10.32 16 4 C 0.51 9.31 7.83 -10.99 -0.09 9.23 16 5 O -0.53 -11.98 15.98 5.56 0.09 -11.89 16 6 C -0.12 -2.33 5.02 -27.88 -0.14 -2.47 16 7 C -0.11 -2.65 3.15 -27.88 -0.09 -2.74 16 8 C 0.51 12.93 7.26 -10.98 -0.08 12.85 16 9 O -0.62 -16.44 15.34 5.55 0.09 -16.36 16 10 N -0.44 -10.99 2.37 -106.54 -0.25 -11.24 16 11 C -0.34 -8.56 6.79 -14.93 -0.10 -8.66 16 12 H 0.08 2.03 7.29 -52.49 -0.38 1.65 16 13 C 0.06 1.56 3.35 -17.47 -0.06 1.50 16 14 N -0.84 -22.36 11.58 55.50 0.64 -21.72 16 15 Si 0.89 20.35 29.63 -169.99 -5.04 15.31 16 16 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 C 0.13 2.91 3.29 -66.82 -0.22 2.69 16 20 C -0.12 -2.51 6.42 -25.03 -0.16 -2.67 16 21 C -0.12 -2.06 6.91 -24.70 -0.17 -2.23 16 22 C -0.12 -1.93 6.83 -25.07 -0.17 -2.10 16 23 C -0.13 -2.40 6.26 -25.62 -0.16 -2.56 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.40 4.18 8.47 -40.82 -0.35 3.84 16 30 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 31 H 0.09 1.74 8.03 -51.93 -0.42 1.32 16 32 H 0.12 2.98 5.42 -51.93 -0.28 2.70 16 33 H 0.08 1.99 7.71 -51.93 -0.40 1.59 16 34 H 0.27 6.90 8.32 -40.82 -0.34 6.56 16 35 H 0.08 1.79 6.95 -51.92 -0.36 1.43 16 36 H 0.09 2.20 7.02 -51.93 -0.36 1.83 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.07 1.43 6.95 -51.93 -0.36 1.07 16 LS Contribution 345.14 15.07 5.20 5.20 Total: -1.00 -30.69 345.14 -7.82 -38.50 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -7.12 Total: 9.28 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -1.09 Total: 3.22 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.06 Total: -43.27 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: 0.17 Total: -28.25 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.04 Total: 15.31 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.69 -7.82 -38.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128278042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.947 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds