Wall clock time and date at job start Tue Mar 31 2020 06:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47143 * 2 1 4 4 C 1.37102 * 119.99501 * 83.24144 * 3 2 1 5 5 H 1.08005 * 119.99800 * 169.43284 * 4 3 2 6 6 C 1.38945 * 120.00217 * 349.43123 * 4 3 2 7 7 N 1.31415 * 120.00020 * 2.04987 * 6 4 3 8 8 Si 1.86801 * 120.00000 * 182.05803 * 6 4 3 9 9 H 1.48500 * 109.47199 * 89.99768 * 8 6 4 10 10 H 1.48501 * 109.46959 * 209.99279 * 8 6 4 11 11 H 1.48496 * 109.47108 * 329.99749 * 8 6 4 12 12 C 1.34776 * 120.00459 * 263.23783 * 3 2 1 13 13 O 1.21290 * 119.99494 * 5.24404 * 12 3 2 14 14 C 1.50693 * 120.00174 * 185.24893 * 12 3 2 15 15 H 1.09000 * 109.47114 * 308.58856 * 14 12 3 16 16 C 1.53005 * 109.47536 * 68.58706 * 14 12 3 17 17 C 1.53002 * 109.47122 * 59.77573 * 16 14 12 18 18 C 1.53000 * 109.47502 * 179.78225 * 16 14 12 19 19 N 1.46502 * 109.47527 * 188.58374 * 14 12 3 20 20 C 1.46766 * 124.34950 * 130.89931 * 19 14 12 21 21 C 1.54481 * 105.46854 * 162.96926 * 20 19 14 22 22 C 1.54625 * 101.76725 * 25.41692 * 21 20 19 23 23 C 1.34421 * 124.34808 * 310.88320 * 19 14 12 24 24 O 1.21282 * 124.93892 * 0.39315 * 23 19 14 25 25 H 1.09008 * 109.46504 * 299.99539 * 1 2 3 26 26 H 1.08994 * 109.47188 * 59.99087 * 1 2 3 27 27 H 1.09001 * 109.47319 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46504 * 240.00461 * 2 1 3 29 29 H 1.08994 * 109.47188 * 120.00913 * 2 1 3 30 30 H 0.96998 * 119.99666 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.46765 * 299.77852 * 16 14 12 32 32 H 1.08997 * 109.46631 * 72.30719 * 17 16 14 33 33 H 1.09003 * 109.47040 * 192.31021 * 17 16 14 34 34 H 1.08998 * 109.47161 * 312.31039 * 17 16 14 35 35 H 1.09005 * 109.46806 * 299.99603 * 18 16 14 36 36 H 1.08999 * 109.47321 * 59.99712 * 18 16 14 37 37 H 1.08995 * 109.47188 * 179.97438 * 18 16 14 38 38 H 1.08996 * 110.24553 * 43.97223 * 20 19 14 39 39 H 1.09003 * 110.24555 * 281.96554 * 20 19 14 40 40 H 1.09006 * 110.96503 * 143.53824 * 21 20 19 41 41 H 1.08998 * 110.97131 * 267.29616 * 21 20 19 42 42 H 1.09004 * 110.48707 * 93.88118 * 22 21 20 43 43 H 1.08999 * 110.48555 * 216.52049 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1151 2.0740 1.1791 5 1 2.6302 3.0228 1.2073 6 6 1.5503 1.5554 2.3379 7 7 0.9586 0.3823 2.3125 8 14 1.6320 2.5260 3.9320 9 1 0.4384 3.4028 4.0393 10 1 1.6615 1.5871 5.0821 11 1 2.8610 3.3595 3.9416 12 6 2.3726 1.9708 -1.1590 13 8 2.1982 1.3932 -2.2112 14 6 2.9854 3.3474 -1.1476 15 1 2.3573 4.0199 -0.5632 16 6 4.3800 3.2798 -0.5220 17 6 5.2600 2.3316 -1.3390 18 6 5.0044 4.6766 -0.5154 19 7 3.0900 3.8469 -2.5209 20 6 2.6369 5.1732 -2.9565 21 6 3.3272 5.4182 -4.3166 22 6 3.5705 3.9737 -4.8115 23 6 3.6136 3.1494 -3.5437 24 8 4.0567 2.0234 -3.4619 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8898 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8898 30 1 0.5648 0.0202 3.1216 31 1 4.3018 2.9120 0.5011 32 1 5.5181 2.8024 -2.2876 33 1 6.1712 2.1116 -0.7827 34 1 4.7176 1.4054 -1.5288 35 1 5.0826 5.0445 -1.5385 36 1 4.3775 5.3521 0.0667 37 1 5.9977 4.6285 -0.0693 38 1 2.9430 5.9317 -2.2361 39 1 1.5535 5.1810 -3.0765 40 1 2.6682 5.9579 -4.9968 41 1 4.2698 5.9496 -4.1856 42 1 2.7510 3.6466 -5.4516 43 1 4.5202 3.9072 -5.3423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154968439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:58 Heat of formation + Delta-G solvation = -38.826056 kcal Electronic energy + Delta-G solvation = -24798.958463 eV Core-core repulsion = 21459.607629 eV Total energy + Delta-G solvation = -3339.350834 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.40691 -38.22201 -35.75538 -35.27485 -34.79712 -31.39826 -31.01608 -29.77699 -27.25228 -26.59269 -26.32154 -24.73761 -21.93449 -21.58024 -20.39668 -19.43971 -18.28769 -17.14405 -16.46878 -15.64722 -15.50022 -15.26222 -14.30362 -14.15665 -13.91220 -13.74582 -13.34104 -13.06089 -12.80044 -12.56948 -12.44306 -12.40405 -12.16684 -11.80079 -11.60010 -11.41393 -11.29072 -11.26498 -10.95805 -10.89243 -10.64524 -10.57708 -10.47428 -10.22340 -10.18923 -9.84285 -9.78380 -8.86997 -8.73317 -8.44859 -7.72249 -7.63361 -6.18156 -3.85935 3.09330 3.18329 3.20164 3.35931 3.51495 3.99387 4.07477 4.65969 4.69840 4.91579 4.96180 5.08914 5.33661 5.43819 5.50823 5.60611 5.66495 5.76176 5.78418 5.87252 5.97401 6.09234 6.13968 6.23303 6.32941 6.37098 6.42832 6.62642 6.73120 6.85896 6.91634 7.04597 7.11442 7.20861 7.23167 7.36085 7.61344 7.84592 7.89079 7.97523 8.52965 8.97186 9.13042 9.63988 10.04711 10.67006 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.006776 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.844188 B = 4131.022287 C = 4704.909158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.139 3.861 3 N -0.447 5.447 4 C -0.324 4.324 5 H 0.099 0.901 6 C 0.028 3.972 7 N -0.866 5.866 8 Si 0.922 3.078 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.271 1.271 12 C 0.452 3.548 13 O -0.576 6.576 14 C 0.162 3.838 15 H 0.097 0.903 16 C -0.106 4.106 17 C -0.135 4.135 18 C -0.139 4.139 19 N -0.605 5.605 20 C 0.105 3.895 21 C -0.129 4.129 22 C -0.156 4.156 23 C 0.517 3.483 24 O -0.490 6.490 25 H 0.090 0.910 26 H 0.012 0.988 27 H 0.028 0.972 28 H 0.031 0.969 29 H 0.105 0.895 30 H 0.264 0.736 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.032 0.968 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.064 0.936 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.854 10.849 -5.469 12.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.016 3.984 3 N -0.167 5.167 4 C -0.452 4.452 5 H 0.117 0.883 6 C -0.175 4.175 7 N -0.507 5.507 8 Si 0.749 3.251 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.195 1.195 12 C 0.238 3.762 13 O -0.460 6.460 14 C 0.056 3.944 15 H 0.114 0.886 16 C -0.126 4.126 17 C -0.192 4.192 18 C -0.196 4.196 19 N -0.341 5.341 20 C -0.019 4.019 21 C -0.167 4.167 22 C -0.197 4.197 23 C 0.303 3.697 24 O -0.362 6.362 25 H 0.109 0.891 26 H 0.031 0.969 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.901 9.753 -5.713 11.957 hybrid contribution -0.234 0.586 1.009 1.190 sum 3.667 10.339 -4.704 11.936 Atomic orbital electron populations 1.22190 0.97207 0.99053 1.00842 1.21334 0.94188 0.82653 1.00195 1.43753 1.55920 1.12051 1.04957 1.19772 1.34838 1.04554 0.86040 0.88309 1.25239 0.96179 0.96514 0.99540 1.70249 1.36130 1.16424 1.27876 0.85993 0.78666 0.79145 0.81280 1.20468 1.20847 1.19548 1.19963 0.84008 0.87894 0.84313 1.90608 1.59319 1.65496 1.30568 1.20716 0.96889 0.95924 0.80877 0.88558 1.21573 0.93571 0.96013 1.01451 1.22050 0.98183 1.00688 0.98271 1.21802 1.00139 0.96620 1.01075 1.47910 1.61728 1.15891 1.08547 1.21981 0.98896 0.85087 0.95900 1.22540 1.01411 0.96464 0.96315 1.22326 1.04235 0.95358 0.97763 1.20383 0.77788 0.86215 0.85282 1.90741 1.44689 1.16928 1.83874 0.89131 0.96882 0.95306 0.95015 0.87764 0.92457 0.88351 0.93029 0.94854 0.90682 0.93102 0.93113 0.93067 0.90873 0.91763 0.89819 0.90441 0.88559 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 9.45 37.16 0.35 -2.96 16 2 C 0.14 3.59 5.45 -4.04 -0.02 3.57 16 3 N -0.45 -11.42 2.64 -114.82 -0.30 -11.72 16 4 C -0.32 -7.94 8.38 -14.93 -0.13 -8.06 16 5 H 0.10 2.24 4.95 -52.48 -0.26 1.98 16 6 C 0.03 0.67 5.27 -17.47 -0.09 0.58 16 7 N -0.87 -21.71 7.11 55.50 0.39 -21.31 16 8 Si 0.92 18.92 29.55 -169.99 -5.02 13.89 16 9 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 10 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 11 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 12 C 0.45 11.23 5.41 -10.99 -0.06 11.17 16 13 O -0.58 -16.10 12.79 -18.32 -0.23 -16.34 16 14 C 0.16 3.23 1.83 -69.08 -0.13 3.11 16 15 H 0.10 1.84 7.32 -51.93 -0.38 1.46 16 16 C -0.11 -1.96 2.46 -90.62 -0.22 -2.19 16 17 C -0.13 -2.69 7.37 37.16 0.27 -2.42 16 18 C -0.14 -2.01 9.00 37.16 0.33 -1.68 16 19 N -0.61 -10.62 2.01 -166.16 -0.33 -10.96 16 20 C 0.11 1.31 7.07 -3.12 -0.02 1.29 16 21 C -0.13 -1.28 7.18 -25.10 -0.18 -1.46 16 22 C -0.16 -2.06 6.86 -26.75 -0.18 -2.24 16 23 C 0.52 9.81 5.66 -10.86 -0.06 9.75 16 24 O -0.49 -11.50 11.33 -18.31 -0.21 -11.71 16 25 H 0.09 2.33 5.73 -51.92 -0.30 2.03 16 26 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.03 0.85 7.30 -51.92 -0.38 0.47 16 29 H 0.10 2.78 6.01 -51.93 -0.31 2.47 16 30 H 0.26 6.33 8.31 -40.82 -0.34 5.99 16 31 H 0.10 1.96 5.92 -51.93 -0.31 1.66 16 32 H 0.05 1.01 5.73 -51.93 -0.30 0.71 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.81 5.65 -51.93 -0.29 1.52 16 35 H 0.05 0.70 7.37 -51.93 -0.38 0.32 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 322.00 15.07 4.85 4.85 Total: -1.00 -30.94 322.00 -7.69 -38.63 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -6.70 Total: 6.20 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -0.14 Total: 8.46 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: -0.24 Total: -43.99 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.44 Total: -28.04 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.94 -7.69 -38.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154968439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.199 kcal (2) G-P(sol) polarization free energy of solvation -30.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds