Wall clock time and date at job start Tue Mar 31 2020 06:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46495 * 109.47143 * 2 1 4 4 C 1.37102 * 119.99501 * 83.24144 * 3 2 1 5 5 H 1.08005 * 119.99800 * 169.43284 * 4 3 2 6 6 C 1.38945 * 120.00217 * 349.43123 * 4 3 2 7 7 N 1.31415 * 120.00020 * 2.04987 * 6 4 3 8 8 Si 1.86801 * 120.00000 * 182.05803 * 6 4 3 9 9 H 1.48500 * 109.47199 * 89.99768 * 8 6 4 10 10 H 1.48501 * 109.46959 * 209.99279 * 8 6 4 11 11 H 1.48496 * 109.47108 * 329.99749 * 8 6 4 12 12 C 1.34776 * 120.00459 * 263.23783 * 3 2 1 13 13 O 1.21290 * 119.99494 * 5.24404 * 12 3 2 14 14 C 1.50693 * 120.00174 * 185.24893 * 12 3 2 15 15 H 1.09000 * 109.47114 * 308.58856 * 14 12 3 16 16 C 1.53005 * 109.47536 * 68.58706 * 14 12 3 17 17 C 1.53002 * 109.47122 * 59.77573 * 16 14 12 18 18 C 1.53000 * 109.47502 * 179.78225 * 16 14 12 19 19 N 1.46502 * 109.47527 * 188.58374 * 14 12 3 20 20 C 1.46766 * 124.34950 * 130.89931 * 19 14 12 21 21 C 1.54481 * 105.46854 * 162.96926 * 20 19 14 22 22 C 1.54625 * 101.76725 * 25.41692 * 21 20 19 23 23 C 1.34421 * 124.34808 * 310.88320 * 19 14 12 24 24 O 1.21282 * 124.93892 * 0.39315 * 23 19 14 25 25 H 1.09008 * 109.46504 * 299.99539 * 1 2 3 26 26 H 1.08994 * 109.47188 * 59.99087 * 1 2 3 27 27 H 1.09001 * 109.47319 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46504 * 240.00461 * 2 1 3 29 29 H 1.08994 * 109.47188 * 120.00913 * 2 1 3 30 30 H 0.96998 * 119.99666 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.46765 * 299.77852 * 16 14 12 32 32 H 1.08997 * 109.46631 * 72.30719 * 17 16 14 33 33 H 1.09003 * 109.47040 * 192.31021 * 17 16 14 34 34 H 1.08998 * 109.47161 * 312.31039 * 17 16 14 35 35 H 1.09005 * 109.46806 * 299.99603 * 18 16 14 36 36 H 1.08999 * 109.47321 * 59.99712 * 18 16 14 37 37 H 1.08995 * 109.47188 * 179.97438 * 18 16 14 38 38 H 1.08996 * 110.24553 * 43.97223 * 20 19 14 39 39 H 1.09003 * 110.24555 * 281.96554 * 20 19 14 40 40 H 1.09006 * 110.96503 * 143.53824 * 21 20 19 41 41 H 1.08998 * 110.97131 * 267.29616 * 21 20 19 42 42 H 1.09004 * 110.48707 * 93.88118 * 22 21 20 43 43 H 1.08999 * 110.48555 * 216.52049 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1151 2.0740 1.1791 5 1 2.6302 3.0228 1.2073 6 6 1.5503 1.5554 2.3379 7 7 0.9586 0.3823 2.3125 8 14 1.6320 2.5260 3.9320 9 1 0.4384 3.4028 4.0393 10 1 1.6615 1.5871 5.0821 11 1 2.8610 3.3595 3.9416 12 6 2.3726 1.9708 -1.1590 13 8 2.1982 1.3932 -2.2112 14 6 2.9854 3.3474 -1.1476 15 1 2.3573 4.0199 -0.5632 16 6 4.3800 3.2798 -0.5220 17 6 5.2600 2.3316 -1.3390 18 6 5.0044 4.6766 -0.5154 19 7 3.0900 3.8469 -2.5209 20 6 2.6369 5.1732 -2.9565 21 6 3.3272 5.4182 -4.3166 22 6 3.5705 3.9737 -4.8115 23 6 3.6136 3.1494 -3.5437 24 8 4.0567 2.0234 -3.4619 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8898 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8898 30 1 0.5648 0.0202 3.1216 31 1 4.3018 2.9120 0.5011 32 1 5.5181 2.8024 -2.2876 33 1 6.1712 2.1116 -0.7827 34 1 4.7176 1.4054 -1.5288 35 1 5.0826 5.0445 -1.5385 36 1 4.3775 5.3521 0.0667 37 1 5.9977 4.6285 -0.0693 38 1 2.9430 5.9317 -2.2361 39 1 1.5535 5.1810 -3.0765 40 1 2.6682 5.9579 -4.9968 41 1 4.2698 5.9496 -4.1856 42 1 2.7510 3.6466 -5.4516 43 1 4.5202 3.9072 -5.3423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154968439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:57 Heat of formation + Delta-G solvation = -56.383997 kcal Electronic energy + Delta-G solvation = -24799.719832 eV Core-core repulsion = 21459.607629 eV Total energy + Delta-G solvation = -3340.112203 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.86764 -39.97053 -37.21602 -36.97268 -36.47468 -33.30818 -32.28705 -31.72757 -28.39454 -27.92949 -27.88261 -26.64896 -23.83224 -22.60660 -21.80627 -21.26918 -19.93364 -18.77173 -17.99533 -17.14424 -17.01646 -16.74873 -16.00484 -15.86214 -15.47297 -15.31810 -14.87596 -14.46650 -14.28962 -14.18796 -14.02110 -13.64644 -13.47512 -13.29346 -13.17424 -12.98146 -12.87797 -12.75189 -12.58170 -12.28255 -12.24501 -12.07781 -11.97392 -11.78409 -11.75148 -11.70308 -11.35373 -10.73640 -10.39203 -10.12654 -9.62515 -9.27763 -8.06049 -5.80349 1.47400 1.51739 1.62411 1.93430 2.14684 2.19918 2.36923 3.08097 3.22235 3.65862 3.77909 3.95871 4.06276 4.11668 4.14428 4.39375 4.44757 4.53622 4.65183 4.75786 4.77119 4.80218 4.84064 4.86786 4.92420 4.98938 5.03258 5.07831 5.13792 5.15800 5.20856 5.30664 5.39798 5.48590 5.53626 5.56251 5.85960 5.88156 5.94341 6.52834 6.57830 7.20577 7.57315 7.72760 8.13086 8.81198 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.006776 C = 0.005950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.844188 B = 4131.022287 C = 4704.909158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.143 3.857 3 N -0.459 5.459 4 C -0.341 4.341 5 H 0.117 0.883 6 C -0.015 4.015 7 N -0.891 5.891 8 Si 0.992 3.008 9 H -0.275 1.275 10 H -0.288 1.288 11 H -0.256 1.256 12 C 0.437 3.563 13 O -0.617 6.617 14 C 0.168 3.832 15 H 0.109 0.891 16 C -0.102 4.102 17 C -0.122 4.122 18 C -0.128 4.128 19 N -0.608 5.608 20 C 0.094 3.906 21 C -0.110 4.110 22 C -0.150 4.150 23 C 0.495 3.505 24 O -0.550 6.550 25 H 0.083 0.917 26 H -0.001 1.001 27 H 0.044 0.956 28 H 0.007 0.993 29 H 0.095 0.905 30 H 0.266 0.734 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.045 0.955 34 H 0.023 0.977 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.101 0.899 39 H 0.065 0.935 40 H 0.116 0.884 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.388 14.686 -5.013 16.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.019 3.981 3 N -0.178 5.178 4 C -0.468 4.468 5 H 0.135 0.865 6 C -0.215 4.215 7 N -0.532 5.532 8 Si 0.816 3.184 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.180 1.180 12 C 0.225 3.775 13 O -0.503 6.503 14 C 0.061 3.939 15 H 0.126 0.874 16 C -0.121 4.121 17 C -0.179 4.179 18 C -0.185 4.185 19 N -0.343 5.343 20 C -0.028 4.028 21 C -0.147 4.147 22 C -0.190 4.190 23 C 0.283 3.717 24 O -0.427 6.427 25 H 0.101 0.899 26 H 0.018 0.982 27 H 0.063 0.937 28 H 0.025 0.975 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.119 0.881 39 H 0.083 0.917 40 H 0.134 0.866 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.427 13.650 -5.263 15.284 hybrid contribution -0.428 -0.714 0.841 1.183 sum 3.999 12.935 -4.422 14.243 Atomic orbital electron populations 1.22011 0.96110 0.99795 0.99591 1.21198 0.95010 0.83582 0.98290 1.44001 1.55999 1.11798 1.06030 1.20204 1.35555 1.05276 0.85798 0.86512 1.26126 0.95489 0.97354 1.02529 1.70343 1.36467 1.17680 1.28728 0.84919 0.79171 0.77674 0.76614 1.20045 1.21377 1.17958 1.20940 0.83367 0.89802 0.83371 1.90568 1.60704 1.67118 1.31933 1.20557 0.97404 0.92844 0.83075 0.87352 1.21519 0.92657 0.98331 0.99632 1.21872 0.98263 0.98849 0.98907 1.21721 1.00770 0.93674 1.02370 1.48130 1.61078 1.17751 1.07335 1.22387 0.99381 0.82917 0.98126 1.22591 1.02962 0.94304 0.94837 1.22338 1.05215 0.96606 0.94853 1.21510 0.76732 0.86027 0.87384 1.90713 1.47171 1.19689 1.85159 0.89857 0.98197 0.93677 0.97500 0.88746 0.92382 0.90115 0.92847 0.93628 0.95811 0.92003 0.91088 0.91751 0.88104 0.91662 0.86551 0.88188 0.88336 0.87526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 9.45 71.98 0.68 -5.26 16 2 C 0.14 7.76 5.45 86.38 0.47 8.23 16 3 N -0.46 -24.29 2.64 -635.55 -1.68 -25.97 16 4 C -0.34 -16.77 8.38 84.04 0.70 -16.07 16 5 H 0.12 5.17 4.95 -2.91 -0.01 5.16 16 6 C -0.02 -0.74 5.27 84.92 0.45 -0.29 16 7 N -0.89 -45.23 7.11 21.66 0.15 -45.07 16 8 Si 0.99 37.85 29.55 68.60 2.03 39.88 16 9 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 10 H -0.29 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.26 -9.09 7.11 99.48 0.71 -8.38 16 12 C 0.44 22.54 5.41 87.65 0.47 23.02 16 13 O -0.62 -36.45 12.79 19.76 0.25 -36.20 16 14 C 0.17 6.64 1.83 44.24 0.08 6.72 16 15 H 0.11 3.96 7.32 -2.39 -0.02 3.94 16 16 C -0.10 -3.66 2.46 -10.79 -0.03 -3.69 16 17 C -0.12 -4.96 7.37 71.98 0.53 -4.43 16 18 C -0.13 -3.25 9.00 71.98 0.65 -2.60 16 19 N -0.61 -20.62 2.01 -798.20 -1.61 -22.23 16 20 C 0.09 2.00 7.07 86.83 0.61 2.61 16 21 C -0.11 -1.66 7.18 31.65 0.23 -1.43 16 22 C -0.15 -3.63 6.86 30.58 0.21 -3.42 16 23 C 0.49 18.76 5.66 87.90 0.50 19.26 16 24 O -0.55 -27.09 11.33 19.78 0.22 -26.87 16 25 H 0.08 4.38 5.73 -2.38 -0.01 4.36 16 26 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 27 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.01 0.38 7.30 -2.38 -0.02 0.37 16 29 H 0.09 5.30 6.01 -2.39 -0.01 5.29 16 30 H 0.27 12.81 8.31 -92.71 -0.77 12.04 16 31 H 0.08 3.18 5.92 -2.38 -0.01 3.17 16 32 H 0.05 2.12 5.73 -2.39 -0.01 2.11 16 33 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.02 1.19 5.65 -2.39 -0.01 1.18 16 35 H 0.06 1.44 7.37 -2.38 -0.02 1.43 16 36 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.12 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 43 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -72.78 322.00 5.93 -66.85 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 1.00 Total: 26.97 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: 5.56 Total: 22.64 kcal Atomic # 7 Polarization: -90.14 SS G_CDS: -3.13 Total: -93.27 kcal Atomic # 8 Polarization: -63.54 SS G_CDS: 0.48 Total: -63.07 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Total: -72.78 5.93 -66.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154968439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.467 kcal (2) G-P(sol) polarization free energy of solvation -72.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds