Wall clock time and date at job start Tue Mar 31 2020 06:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47475 * 2 1 4 4 C 1.37103 * 119.99815 * 274.49948 * 3 2 1 5 5 H 1.08000 * 119.99880 * 146.22450 * 4 3 2 6 6 C 1.38948 * 120.00285 * 326.23134 * 4 3 2 7 7 N 1.31404 * 120.00411 * 155.20990 * 6 4 3 8 8 Si 1.86807 * 119.99774 * 335.20433 * 6 4 3 9 9 H 1.48495 * 109.46774 * 95.33355 * 8 6 4 10 10 H 1.48490 * 109.47067 * 215.33351 * 8 6 4 11 11 H 1.48498 * 109.46773 * 335.33680 * 8 6 4 12 12 C 1.34774 * 120.00211 * 94.50420 * 3 2 1 13 13 O 1.21297 * 120.00347 * 174.44507 * 12 3 2 14 14 C 1.50701 * 120.00091 * 354.43784 * 12 3 2 15 15 H 1.09008 * 109.46909 * 3.35782 * 14 12 3 16 16 C 1.52992 * 109.47455 * 243.35971 * 14 12 3 17 17 C 1.53001 * 109.47346 * 65.71338 * 16 14 12 18 18 C 1.52998 * 109.47580 * 185.71758 * 16 14 12 19 19 N 1.46499 * 109.47054 * 123.35567 * 14 12 3 20 20 C 1.46763 * 124.35181 * 240.00242 * 19 14 12 21 21 C 1.54473 * 105.47276 * 197.01898 * 20 19 14 22 22 C 1.54623 * 101.76721 * 334.58150 * 21 20 19 23 23 C 1.34421 * 124.34535 * 59.70661 * 19 14 12 24 24 O 1.21275 * 124.94372 * 359.56447 * 23 19 14 25 25 H 1.08996 * 109.47225 * 305.04182 * 1 2 3 26 26 H 1.09003 * 109.47179 * 65.04077 * 1 2 3 27 27 H 1.09005 * 109.47661 * 185.03627 * 1 2 3 28 28 H 1.09002 * 109.47082 * 239.99175 * 2 1 3 29 29 H 1.08998 * 109.46902 * 120.00110 * 2 1 3 30 30 H 0.96996 * 120.00583 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47272 * 305.71775 * 16 14 12 32 32 H 1.09004 * 109.47182 * 65.05866 * 17 16 14 33 33 H 1.09004 * 109.47426 * 185.05722 * 17 16 14 34 34 H 1.09000 * 109.47031 * 305.06462 * 17 16 14 35 35 H 1.09001 * 109.47057 * 59.99324 * 18 16 14 36 36 H 1.08998 * 109.47855 * 180.02562 * 18 16 14 37 37 H 1.09002 * 109.46637 * 299.99881 * 18 16 14 38 38 H 1.08995 * 110.24380 * 316.01808 * 20 19 14 39 39 H 1.08998 * 110.24568 * 78.01739 * 20 19 14 40 40 H 1.09002 * 110.97457 * 92.70555 * 21 20 19 41 41 H 1.09007 * 110.96876 * 216.46649 * 21 20 19 42 42 H 1.09003 * 110.48935 * 143.47741 * 22 21 20 43 43 H 1.09002 * 110.49081 * 265.98944 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1591 2.0584 -1.1837 5 1 1.9790 3.1226 -1.2216 6 6 2.5332 1.3757 -2.3346 7 7 2.2128 1.8541 -3.5158 8 14 3.4919 -0.2221 -2.2027 9 1 2.5516 -1.3698 -2.2624 10 1 4.4574 -0.3143 -3.3271 11 1 4.2286 -0.2523 -0.9137 12 6 2.3294 1.9859 1.1635 13 8 2.8282 3.0916 1.1581 14 6 2.0575 1.2886 2.4715 15 1 1.6665 0.2899 2.2764 16 6 1.0307 2.0906 3.2734 17 6 -0.3117 2.0786 2.5394 18 6 0.8606 1.4619 4.6578 19 7 3.3020 1.1846 3.2374 20 6 3.9084 -0.0819 3.6643 21 6 4.9142 0.2962 4.7741 22 6 5.2458 1.7626 4.4129 23 6 4.0382 2.2369 3.6346 24 8 3.7718 3.3974 3.4046 25 1 -0.3633 0.5900 0.8413 26 1 -0.3634 0.4337 -0.9317 27 1 -0.3634 -1.0237 0.0902 28 1 1.8933 -0.5140 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 2.4736 1.3773 -4.3192 31 1 1.3765 3.1186 3.3812 32 1 -0.7010 1.0609 2.5105 33 1 -1.0180 2.7230 3.0630 34 1 -0.1726 2.4434 1.5217 35 1 1.8170 1.4704 5.1807 36 1 0.1287 2.0330 5.2289 37 1 0.5147 0.4339 4.5499 38 1 3.1446 -0.7513 4.0597 39 1 4.4274 -0.5520 2.8291 40 1 4.4511 0.2321 5.7588 41 1 5.8055 -0.3293 4.7224 42 1 5.3783 2.3576 5.3166 43 1 6.1403 1.8097 3.7918 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000154968549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:00 Heat of formation + Delta-G solvation = -46.931149 kcal Electronic energy + Delta-G solvation = -24691.242400 eV Core-core repulsion = 21351.540103 eV Total energy + Delta-G solvation = -3339.702297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.50845 -38.56153 -35.99524 -35.49130 -34.95415 -32.19092 -31.53567 -29.70777 -27.51359 -27.30721 -26.69946 -24.42834 -22.87266 -21.81973 -20.59584 -19.92061 -18.00485 -16.96887 -16.78171 -16.35266 -15.94184 -15.57083 -14.95753 -14.17255 -14.06209 -13.79024 -13.45907 -13.41740 -13.12588 -12.89638 -12.86091 -12.64625 -12.33686 -12.28074 -12.17997 -12.08856 -11.67807 -11.46747 -11.35064 -11.01049 -10.95352 -10.89062 -10.74176 -10.69872 -10.33986 -10.06123 -9.75511 -9.22988 -8.98432 -8.79037 -7.87132 -7.72581 -6.37519 -3.86913 2.97784 3.06340 3.14613 3.23802 3.25788 3.95189 4.16739 4.35918 4.51695 4.57459 4.79581 5.00445 5.06207 5.16511 5.22372 5.31093 5.38436 5.49015 5.54994 5.58716 5.65174 5.69166 5.78060 5.82398 5.88019 5.93815 5.96270 5.97249 6.02702 6.11016 6.20827 6.30831 6.44438 6.57741 6.61279 6.83909 6.90556 7.52500 7.59840 8.31808 8.56389 8.70438 9.04979 9.37713 9.86861 10.75111 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017959 B = 0.007371 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.702056 B = 3797.643225 C = 4278.202061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.087 3.913 3 N -0.466 5.466 4 C -0.309 4.309 5 H 0.105 0.895 6 C 0.060 3.940 7 N -0.862 5.862 8 Si 0.874 3.126 9 H -0.275 1.275 10 H -0.289 1.289 11 H -0.268 1.268 12 C 0.450 3.550 13 O -0.527 6.527 14 C 0.145 3.855 15 H 0.095 0.905 16 C -0.101 4.101 17 C -0.149 4.149 18 C -0.136 4.136 19 N -0.611 5.611 20 C 0.102 3.898 21 C -0.128 4.128 22 C -0.156 4.156 23 C 0.509 3.491 24 O -0.486 6.486 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.273 0.727 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.174 -10.038 16.100 18.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.037 4.037 3 N -0.190 5.190 4 C -0.436 4.436 5 H 0.123 0.877 6 C -0.146 4.146 7 N -0.498 5.498 8 Si 0.702 3.298 9 H -0.203 1.203 10 H -0.216 1.216 11 H -0.192 1.192 12 C 0.236 3.764 13 O -0.405 6.405 14 C 0.039 3.961 15 H 0.113 0.887 16 C -0.120 4.120 17 C -0.207 4.207 18 C -0.194 4.194 19 N -0.348 5.348 20 C -0.022 4.022 21 C -0.166 4.166 22 C -0.197 4.197 23 C 0.295 3.705 24 O -0.358 6.358 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.115 0.885 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.104 -8.792 15.702 17.996 hybrid contribution 0.579 -1.222 -0.333 1.392 sum 0.475 -10.014 15.369 18.349 Atomic orbital electron populations 1.22373 0.96137 1.00895 1.03964 1.21805 0.95083 0.86062 1.00752 1.43857 1.57680 1.11412 1.06027 1.19022 1.45997 0.95700 0.82836 0.87734 1.25276 0.96403 0.98031 0.94851 1.69783 1.41861 1.40410 0.97766 0.87030 0.80867 0.83545 0.78343 1.20310 1.21593 1.19229 1.20360 0.82953 0.88487 0.84573 1.90690 1.43594 1.19984 1.86189 1.21171 0.83738 1.00484 0.90674 0.88730 1.21331 0.94508 1.01701 0.94495 1.21976 0.95837 1.01411 1.01460 1.21746 1.01248 1.00037 0.96330 1.48063 1.24149 1.07108 1.55445 1.22055 0.96304 0.86607 0.97204 1.22541 0.99455 0.95995 0.98625 1.22340 0.98536 0.97094 1.01721 1.20735 0.84411 0.85492 0.79864 1.90804 1.72137 1.17653 1.55209 0.91590 0.91235 0.93034 0.91651 0.92253 0.91717 0.88944 0.92448 0.92462 0.91325 0.92887 0.92813 0.93121 0.90585 0.91492 0.90183 0.89537 0.88539 0.88293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.99 10.21 37.15 0.38 -2.61 16 2 C 0.09 1.73 4.75 -4.05 -0.02 1.71 16 3 N -0.47 -11.40 2.24 -114.82 -0.26 -11.65 16 4 C -0.31 -8.89 9.37 -14.93 -0.14 -9.03 16 5 H 0.11 3.42 7.89 -52.49 -0.41 3.00 16 6 C 0.06 1.67 5.30 -17.47 -0.09 1.58 16 7 N -0.86 -25.17 13.96 55.50 0.77 -24.39 16 8 Si 0.87 20.87 25.05 -169.99 -4.26 16.61 16 9 H -0.28 -6.06 6.65 56.52 0.38 -5.68 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.45 10.83 5.50 -10.99 -0.06 10.77 16 13 O -0.53 -15.27 14.06 -17.00 -0.24 -15.51 16 14 C 0.15 2.63 1.94 -69.09 -0.13 2.49 16 15 H 0.09 1.48 5.33 -51.92 -0.28 1.21 16 16 C -0.10 -1.67 2.25 -90.62 -0.20 -1.87 16 17 C -0.15 -2.28 7.74 37.16 0.29 -1.99 16 18 C -0.14 -1.72 8.97 37.16 0.33 -1.39 16 19 N -0.61 -10.02 1.87 -166.17 -0.31 -10.33 16 20 C 0.10 1.15 7.30 -3.13 -0.02 1.13 16 21 C -0.13 -1.13 7.18 -25.11 -0.18 -1.31 16 22 C -0.16 -1.92 6.86 -26.74 -0.18 -2.10 16 23 C 0.51 9.26 7.07 -10.86 -0.08 9.19 16 24 O -0.49 -11.36 14.26 -16.98 -0.24 -11.60 16 25 H 0.07 1.04 4.11 -51.93 -0.21 0.83 16 26 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.40 2.78 -51.93 -0.14 1.26 16 29 H 0.06 0.99 5.88 -51.93 -0.31 0.69 16 30 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 31 H 0.09 1.89 6.89 -51.93 -0.36 1.53 16 32 H 0.06 0.74 6.76 -51.93 -0.35 0.39 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 1.27 6.65 -51.93 -0.35 0.92 16 35 H 0.05 0.67 7.27 -51.93 -0.38 0.30 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 328.16 15.07 4.95 4.95 Total: -1.00 -35.99 328.16 -6.30 -42.28 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -6.60 Total: 3.09 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: -0.11 Total: 6.56 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: 0.21 Total: -46.38 kcal Atomic # 8 Polarization: -26.63 SS G_CDS: -0.48 Total: -27.11 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.26 Total: 16.61 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.99 -6.30 -42.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154968549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.648 kcal (2) G-P(sol) polarization free energy of solvation -35.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds