Wall clock time and date at job start Tue Mar 31 2020 06:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47475 * 2 1 4 4 C 1.37103 * 119.99815 * 274.49948 * 3 2 1 5 5 H 1.08000 * 119.99880 * 146.22450 * 4 3 2 6 6 C 1.38948 * 120.00285 * 326.23134 * 4 3 2 7 7 N 1.31404 * 120.00411 * 155.20990 * 6 4 3 8 8 Si 1.86807 * 119.99774 * 335.20433 * 6 4 3 9 9 H 1.48495 * 109.46774 * 95.33355 * 8 6 4 10 10 H 1.48490 * 109.47067 * 215.33351 * 8 6 4 11 11 H 1.48498 * 109.46773 * 335.33680 * 8 6 4 12 12 C 1.34774 * 120.00211 * 94.50420 * 3 2 1 13 13 O 1.21297 * 120.00347 * 174.44507 * 12 3 2 14 14 C 1.50701 * 120.00091 * 354.43784 * 12 3 2 15 15 H 1.09008 * 109.46909 * 3.35782 * 14 12 3 16 16 C 1.52992 * 109.47455 * 243.35971 * 14 12 3 17 17 C 1.53001 * 109.47346 * 65.71338 * 16 14 12 18 18 C 1.52998 * 109.47580 * 185.71758 * 16 14 12 19 19 N 1.46499 * 109.47054 * 123.35567 * 14 12 3 20 20 C 1.46763 * 124.35181 * 240.00242 * 19 14 12 21 21 C 1.54473 * 105.47276 * 197.01898 * 20 19 14 22 22 C 1.54623 * 101.76721 * 334.58150 * 21 20 19 23 23 C 1.34421 * 124.34535 * 59.70661 * 19 14 12 24 24 O 1.21275 * 124.94372 * 359.56447 * 23 19 14 25 25 H 1.08996 * 109.47225 * 305.04182 * 1 2 3 26 26 H 1.09003 * 109.47179 * 65.04077 * 1 2 3 27 27 H 1.09005 * 109.47661 * 185.03627 * 1 2 3 28 28 H 1.09002 * 109.47082 * 239.99175 * 2 1 3 29 29 H 1.08998 * 109.46902 * 120.00110 * 2 1 3 30 30 H 0.96996 * 120.00583 * 180.02562 * 7 6 4 31 31 H 1.08996 * 109.47272 * 305.71775 * 16 14 12 32 32 H 1.09004 * 109.47182 * 65.05866 * 17 16 14 33 33 H 1.09004 * 109.47426 * 185.05722 * 17 16 14 34 34 H 1.09000 * 109.47031 * 305.06462 * 17 16 14 35 35 H 1.09001 * 109.47057 * 59.99324 * 18 16 14 36 36 H 1.08998 * 109.47855 * 180.02562 * 18 16 14 37 37 H 1.09002 * 109.46637 * 299.99881 * 18 16 14 38 38 H 1.08995 * 110.24380 * 316.01808 * 20 19 14 39 39 H 1.08998 * 110.24568 * 78.01739 * 20 19 14 40 40 H 1.09002 * 110.97457 * 92.70555 * 21 20 19 41 41 H 1.09007 * 110.96876 * 216.46649 * 21 20 19 42 42 H 1.09003 * 110.48935 * 143.47741 * 22 21 20 43 43 H 1.09002 * 110.49081 * 265.98944 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1591 2.0584 -1.1837 5 1 1.9790 3.1226 -1.2216 6 6 2.5332 1.3757 -2.3346 7 7 2.2128 1.8541 -3.5158 8 14 3.4919 -0.2221 -2.2027 9 1 2.5516 -1.3698 -2.2624 10 1 4.4574 -0.3143 -3.3271 11 1 4.2286 -0.2523 -0.9137 12 6 2.3294 1.9859 1.1635 13 8 2.8282 3.0916 1.1581 14 6 2.0575 1.2886 2.4715 15 1 1.6665 0.2899 2.2764 16 6 1.0307 2.0906 3.2734 17 6 -0.3117 2.0786 2.5394 18 6 0.8606 1.4619 4.6578 19 7 3.3020 1.1846 3.2374 20 6 3.9084 -0.0819 3.6643 21 6 4.9142 0.2962 4.7741 22 6 5.2458 1.7626 4.4129 23 6 4.0382 2.2369 3.6346 24 8 3.7718 3.3974 3.4046 25 1 -0.3633 0.5900 0.8413 26 1 -0.3634 0.4337 -0.9317 27 1 -0.3634 -1.0237 0.0902 28 1 1.8933 -0.5140 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 2.4736 1.3773 -4.3192 31 1 1.3765 3.1186 3.3812 32 1 -0.7010 1.0609 2.5105 33 1 -1.0180 2.7230 3.0630 34 1 -0.1726 2.4434 1.5217 35 1 1.8170 1.4704 5.1807 36 1 0.1287 2.0330 5.2289 37 1 0.5147 0.4339 4.5499 38 1 3.1446 -0.7513 4.0597 39 1 4.4274 -0.5520 2.8291 40 1 4.4511 0.2321 5.7588 41 1 5.8055 -0.3293 4.7224 42 1 5.3783 2.3576 5.3166 43 1 6.1403 1.8097 3.7918 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000154968549.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:00 Heat of formation + Delta-G solvation = -72.139676 kcal Electronic energy + Delta-G solvation = -24692.335524 eV Core-core repulsion = 21351.540103 eV Total energy + Delta-G solvation = -3340.795421 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.89052 -40.20139 -37.42113 -37.10581 -36.52327 -34.28838 -32.64745 -31.36891 -28.90746 -28.36060 -27.93912 -26.27180 -24.43907 -22.74230 -21.86440 -21.54694 -19.49889 -18.86308 -18.37630 -17.82942 -17.39864 -17.06870 -16.23930 -15.82507 -15.66128 -15.10828 -15.03395 -14.69771 -14.54194 -14.50816 -14.22330 -13.96104 -13.69682 -13.61086 -13.52659 -13.32687 -13.17834 -12.78291 -12.72440 -12.49321 -12.28703 -12.10174 -12.00106 -11.97214 -11.85819 -11.59144 -11.51474 -11.03936 -10.63082 -10.33863 -9.75872 -9.42611 -8.54951 -6.10083 1.11701 1.26243 1.38801 1.63748 1.82303 2.13346 2.31163 2.65420 3.00059 3.47413 3.68779 3.78978 3.82990 3.86564 4.06313 4.10847 4.19902 4.27299 4.38556 4.41359 4.49184 4.63566 4.72891 4.74026 4.76645 4.86754 4.89157 4.93468 4.97336 5.02261 5.13482 5.20300 5.27719 5.31440 5.40741 5.45813 5.52978 5.69429 5.99850 6.31187 6.56444 6.95986 7.30572 7.38992 7.93077 8.63420 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.017959 B = 0.007371 C = 0.006543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.702056 B = 3797.643225 C = 4278.202061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.076 3.924 3 N -0.474 5.474 4 C -0.330 4.330 5 H 0.034 0.966 6 C 0.011 3.989 7 N -0.908 5.908 8 Si 0.951 3.049 9 H -0.230 1.230 10 H -0.290 1.290 11 H -0.265 1.265 12 C 0.442 3.558 13 O -0.594 6.594 14 C 0.156 3.844 15 H 0.131 0.869 16 C -0.099 4.099 17 C -0.145 4.145 18 C -0.124 4.124 19 N -0.614 5.614 20 C 0.088 3.912 21 C -0.109 4.109 22 C -0.151 4.151 23 C 0.486 3.514 24 O -0.558 6.558 25 H 0.075 0.925 26 H 0.034 0.966 27 H 0.100 0.900 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.280 0.720 31 H 0.038 0.962 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.023 0.977 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.117 0.883 42 H 0.110 0.890 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.117 -15.781 19.174 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.045 4.045 3 N -0.197 5.197 4 C -0.458 4.458 5 H 0.052 0.948 6 C -0.191 4.191 7 N -0.546 5.546 8 Si 0.774 3.226 9 H -0.155 1.155 10 H -0.218 1.218 11 H -0.189 1.189 12 C 0.230 3.770 13 O -0.475 6.475 14 C 0.049 3.951 15 H 0.149 0.851 16 C -0.119 4.119 17 C -0.202 4.202 18 C -0.182 4.182 19 N -0.349 5.349 20 C -0.032 4.032 21 C -0.146 4.146 22 C -0.191 4.191 23 C 0.274 3.726 24 O -0.435 6.435 25 H 0.093 0.907 26 H 0.053 0.947 27 H 0.119 0.881 28 H 0.073 0.927 29 H 0.122 0.878 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.086 0.914 40 H 0.123 0.877 41 H 0.136 0.864 42 H 0.129 0.871 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.071 -14.624 18.795 23.815 hybrid contribution 0.527 0.720 -1.335 1.605 sum 0.456 -13.905 17.461 22.326 Atomic orbital electron populations 1.22343 0.93965 1.03811 1.02649 1.22140 0.97029 0.83098 1.02267 1.44000 1.57888 1.13156 1.04672 1.18547 1.48100 0.93478 0.85696 0.94843 1.26106 0.96401 1.02882 0.93706 1.69902 1.42868 1.43017 0.98825 0.85826 0.79287 0.79385 0.78069 1.15529 1.21770 1.18938 1.21604 0.81031 0.87822 0.86556 1.90658 1.46250 1.23116 1.87469 1.21065 0.85337 1.01213 0.87469 0.85108 1.21293 0.94303 0.99063 0.97219 1.21957 0.95835 1.03682 0.98757 1.21670 1.01807 1.01657 0.93028 1.48341 1.23417 1.09006 1.54159 1.22537 0.97888 0.84603 0.98220 1.22609 1.00157 0.93006 0.98832 1.22376 0.95395 1.00062 1.01285 1.21928 0.85981 0.84965 0.79682 1.90767 1.74094 1.20718 1.57872 0.90674 0.94659 0.88117 0.92652 0.87838 0.91078 0.94319 0.88784 0.91070 0.95824 0.92910 0.91790 0.89626 0.86673 0.91398 0.87656 0.86439 0.87127 0.88311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.31 10.21 71.98 0.74 -4.58 16 2 C 0.08 2.84 4.75 86.38 0.41 3.25 16 3 N -0.47 -23.81 2.24 -635.56 -1.42 -25.23 16 4 C -0.33 -20.42 9.37 84.04 0.79 -19.63 16 5 H 0.03 2.47 7.89 -2.91 -0.02 2.45 16 6 C 0.01 0.64 5.30 84.93 0.45 1.09 16 7 N -0.91 -55.69 13.96 21.66 0.30 -55.39 16 8 Si 0.95 42.81 25.05 68.60 1.72 44.53 16 9 H -0.23 -8.75 6.65 99.48 0.66 -8.09 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 12 C 0.44 22.14 5.50 87.66 0.48 22.62 16 13 O -0.59 -37.53 14.06 18.47 0.26 -37.27 16 14 C 0.16 5.41 1.94 44.24 0.09 5.49 16 15 H 0.13 3.48 5.33 -2.38 -0.01 3.47 16 16 C -0.10 -3.22 2.25 -10.80 -0.02 -3.24 16 17 C -0.14 -4.31 7.74 71.98 0.56 -3.76 16 18 C -0.12 -2.68 8.97 71.98 0.65 -2.04 16 19 N -0.61 -18.89 1.87 -798.22 -1.49 -20.38 16 20 C 0.09 1.54 7.30 86.83 0.63 2.17 16 21 C -0.11 -1.33 7.18 31.65 0.23 -1.10 16 22 C -0.15 -3.38 6.86 30.59 0.21 -3.17 16 23 C 0.49 17.81 7.07 87.90 0.62 18.43 16 24 O -0.56 -27.98 14.26 18.54 0.26 -27.72 16 25 H 0.07 2.19 4.11 -2.39 -0.01 2.18 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 28 H 0.06 2.18 2.78 -2.39 -0.01 2.17 16 29 H 0.10 2.90 5.88 -2.39 -0.01 2.88 16 30 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 31 H 0.04 1.68 6.89 -2.39 -0.02 1.67 16 32 H 0.09 2.07 6.76 -2.38 -0.02 2.06 16 33 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 34 H 0.02 0.90 6.65 -2.39 -0.02 0.88 16 35 H 0.05 1.15 7.27 -2.39 -0.02 1.13 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.10 2.21 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -93.96 328.16 6.41 -87.55 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: 0.96 Total: 18.36 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 5.82 Total: 15.53 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -2.61 Total: -101.00 kcal Atomic # 8 Polarization: -65.51 SS G_CDS: 0.52 Total: -64.98 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.72 Total: 44.53 kcal Total: -93.96 6.41 -87.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000154968549.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.411 kcal (2) G-P(sol) polarization free energy of solvation -93.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds