Wall clock time and date at job start Tue Mar 31 2020 05:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46778 * 2 1 4 4 C 1.52999 * 109.47183 * 240.00455 * 2 1 3 5 5 C 1.50691 * 109.47253 * 174.99883 * 4 2 1 6 6 O 1.21299 * 120.00120 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00023 * 179.97438 * 5 4 2 8 8 C 1.46498 * 120.00337 * 0.02562 * 7 5 4 9 9 C 1.37105 * 119.99862 * 179.97438 * 7 5 4 10 10 H 1.07989 * 120.00115 * 24.39192 * 9 7 5 11 11 C 1.38949 * 119.99908 * 204.39468 * 9 7 5 12 12 N 1.31419 * 120.00074 * 12.64044 * 11 9 7 13 13 Si 1.86793 * 120.00322 * 192.64108 * 11 9 7 14 14 H 1.48506 * 109.46960 * 59.99714 * 13 11 9 15 15 H 1.48496 * 109.47608 * 179.97438 * 13 11 9 16 16 H 1.48508 * 109.46954 * 300.00036 * 13 11 9 17 17 N 1.46493 * 109.47301 * 120.00149 * 2 1 3 18 18 C 1.34778 * 120.00236 * 274.99944 * 17 2 1 19 19 O 1.21290 * 119.99838 * 0.02562 * 18 17 2 20 20 C 1.50697 * 120.00429 * 179.97438 * 18 17 2 21 21 C 1.54269 * 110.03287 * 297.91048 * 20 18 17 22 22 C 1.54960 * 104.15867 * 217.13208 * 21 20 18 23 23 C 1.54888 * 102.77946 * 37.88879 * 22 21 20 24 24 C 1.53872 * 110.03480 * 180.69134 * 20 18 17 25 25 H 1.09003 * 109.46975 * 299.99346 * 1 2 3 26 26 H 1.08993 * 109.47037 * 59.99667 * 1 2 3 27 27 H 1.09002 * 109.46778 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46973 * 294.99728 * 4 2 1 29 29 H 1.09002 * 109.47191 * 54.99651 * 4 2 1 30 30 H 1.08999 * 109.47599 * 85.85652 * 8 7 5 31 31 H 1.08997 * 109.47097 * 205.86755 * 8 7 5 32 32 H 1.09006 * 109.46515 * 325.86256 * 8 7 5 33 33 H 0.96996 * 120.00430 * 179.97438 * 12 11 9 34 34 H 0.97002 * 120.00277 * 95.27535 * 17 2 1 35 35 H 1.08998 * 110.01404 * 59.29990 * 20 18 17 36 36 H 1.09001 * 110.48858 * 335.78322 * 21 20 18 37 37 H 1.08997 * 110.48363 * 98.42445 * 21 20 18 38 38 H 1.08997 * 110.72658 * 279.57172 * 22 21 20 39 39 H 1.09001 * 110.91927 * 156.29443 * 22 21 20 40 40 H 1.08998 * 110.48876 * 203.40129 * 23 22 21 41 41 H 1.09011 * 110.59732 * 80.81194 * 23 22 21 42 42 H 1.09004 * 110.03431 * 238.56992 * 24 20 18 43 43 H 1.09003 * 110.03287 * 0.02562 * 24 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 8 4.1451 -0.0202 -0.4445 7 7 4.2149 -1.1803 -2.3344 8 6 3.4865 -1.8980 -3.3835 9 6 5.5813 -1.0831 -2.3924 10 1 6.1502 -0.9247 -1.4883 11 6 6.2340 -1.1883 -3.6145 12 7 5.5470 -1.1311 -4.7334 13 14 8.0879 -1.4109 -3.6672 14 1 8.4568 -2.6606 -2.9547 15 1 8.5362 -1.4966 -5.0803 16 1 8.7444 -0.2532 -3.0084 17 7 2.0184 -0.6906 1.1961 18 6 2.1472 -0.0183 2.3571 19 8 1.8583 1.1584 2.4117 20 6 2.6490 -0.7288 3.5877 21 6 1.6775 -1.8623 3.9765 22 6 1.6739 -1.8436 5.5260 23 6 1.7409 -0.3305 5.8505 24 6 2.6897 0.2446 4.7787 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7517 -1.7715 -1.2057 29 1 1.6054 -0.2616 -2.1370 30 1 3.1578 -1.1917 -4.1459 31 1 4.1412 -2.6427 -3.8360 32 1 2.6183 -2.3935 -2.9489 33 1 6.0027 -1.2042 -5.5866 34 1 2.2529 -1.6308 1.1516 35 1 3.6433 -1.1359 3.4040 36 1 0.6788 -1.6581 3.5904 37 1 2.0419 -2.8207 3.6067 38 1 2.5479 -2.3622 5.9201 39 1 0.7566 -2.2826 5.9184 40 1 2.1511 -0.1720 6.8478 41 1 0.7531 0.1233 5.7686 42 1 3.7036 0.3093 5.1736 43 1 2.3460 1.2309 4.4667 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171404862.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:38 Heat of formation + Delta-G solvation = -87.998164 kcal Electronic energy + Delta-G solvation = -22955.651774 eV Core-core repulsion = 19614.168677 eV Total energy + Delta-G solvation = -3341.483096 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.97426 -38.54949 -37.06001 -35.39940 -34.40254 -31.79802 -31.27592 -28.89296 -28.61172 -27.82140 -26.09105 -24.25731 -22.54691 -20.94303 -20.51701 -19.44895 -18.74068 -17.18012 -16.85604 -16.12283 -15.86643 -15.53044 -14.83747 -14.54835 -14.36683 -14.21915 -13.90071 -13.43560 -13.13426 -13.09963 -12.41907 -12.19644 -12.04520 -11.74156 -11.61411 -11.39669 -11.30230 -11.23259 -11.18742 -11.12762 -11.07674 -10.89687 -10.81909 -10.59589 -10.49032 -10.40035 -10.20613 -9.33871 -9.00044 -8.66518 -8.32712 -7.64743 -6.32284 -3.88402 3.06380 3.18339 3.23946 3.27728 3.56815 3.91556 4.13736 4.47347 4.57662 4.74557 4.79528 5.11513 5.15520 5.30193 5.37973 5.40485 5.49121 5.49857 5.56777 5.60374 5.63554 5.77374 5.80224 5.84368 5.86257 5.98229 6.02777 6.09812 6.15626 6.25260 6.26142 6.39416 6.41065 6.53995 6.82470 6.94829 7.17593 7.56454 7.92364 8.15009 8.49480 8.66090 9.20082 9.43387 10.00304 10.72831 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.022330 B = 0.004061 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.642516 B = 6893.780885 C = 7594.379981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.160 3.840 3 H 0.092 0.908 4 C -0.141 4.141 5 C 0.444 3.556 6 O -0.579 6.579 7 N -0.449 5.449 8 C 0.112 3.888 9 C -0.306 4.306 10 H 0.096 0.904 11 C 0.030 3.970 12 N -0.884 5.884 13 Si 0.925 3.075 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.273 1.273 17 N -0.704 5.704 18 C 0.527 3.473 19 O -0.548 6.548 20 C -0.115 4.115 21 C -0.114 4.114 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.119 4.119 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.024 0.976 33 H 0.267 0.733 34 H 0.395 0.605 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.092 -4.930 11.930 16.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.055 3.945 3 H 0.110 0.890 4 C -0.182 4.182 5 C 0.231 3.769 6 O -0.463 6.463 7 N -0.169 5.169 8 C -0.032 4.032 9 C -0.434 4.434 10 H 0.114 0.886 11 C -0.173 4.173 12 N -0.523 5.523 13 Si 0.752 3.248 14 H -0.200 1.200 15 H -0.210 1.210 16 H -0.198 1.198 17 N -0.353 5.353 18 C 0.313 3.687 19 O -0.426 6.426 20 C -0.136 4.136 21 C -0.152 4.152 22 C -0.161 4.161 23 C -0.161 4.161 24 C -0.157 4.157 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.229 0.771 35 H 0.116 0.884 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.943 -3.806 12.136 16.144 hybrid contribution 1.089 -0.691 -0.601 1.423 sum -8.854 -4.497 11.535 15.221 Atomic orbital electron populations 1.22184 0.95718 1.01667 1.02292 1.20628 0.92299 0.98342 0.83206 0.88962 1.21928 0.96243 1.01477 0.98544 1.20035 0.88258 0.83160 0.85400 1.90558 1.69720 1.45613 1.40429 1.43591 1.06598 1.45771 1.20910 1.21459 0.94194 0.96922 0.90578 1.19569 0.80860 1.48602 0.94388 0.88645 1.25327 1.00258 0.96873 0.94800 1.69980 1.36328 1.48506 0.97529 0.86017 0.82615 0.79112 0.77062 1.19981 1.20966 1.19820 1.45763 1.66628 1.13611 1.09319 1.20326 0.76866 0.87016 0.84473 1.90615 1.50952 1.16063 1.85005 1.21931 1.00903 0.96876 0.93899 1.22354 0.99130 0.97395 0.96298 1.22504 1.01662 0.96697 0.95232 1.22359 0.99900 0.95314 0.98507 1.22147 0.99830 1.00289 0.93387 0.92271 0.91722 0.92757 0.90229 0.88937 0.93099 0.90824 0.95714 0.92252 0.77145 0.88408 0.91248 0.90987 0.91351 0.91583 0.91770 0.91693 0.91640 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.48 37.16 0.35 -1.74 16 2 C 0.16 2.66 2.13 -67.93 -0.15 2.52 16 3 H 0.09 1.88 7.39 -51.93 -0.38 1.50 16 4 C -0.14 -2.41 3.85 -27.89 -0.11 -2.52 16 5 C 0.44 10.39 7.49 -10.99 -0.08 10.31 16 6 O -0.58 -15.64 15.07 5.54 0.08 -15.55 16 7 N -0.45 -11.25 3.01 -122.20 -0.37 -11.62 16 8 C 0.11 2.43 8.44 59.85 0.51 2.93 16 9 C -0.31 -8.49 9.24 -14.93 -0.14 -8.63 16 10 H 0.10 2.78 7.45 -52.49 -0.39 2.39 16 11 C 0.03 0.80 5.04 -17.46 -0.09 0.71 16 12 N -0.88 -23.55 10.83 55.50 0.60 -22.95 16 13 Si 0.93 20.79 29.57 -169.99 -5.03 15.77 16 14 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 N -0.70 -11.19 4.16 -53.81 -0.22 -11.42 16 18 C 0.53 8.86 6.97 -10.99 -0.08 8.79 16 19 O -0.55 -11.11 14.87 5.55 0.08 -11.03 16 20 C -0.11 -1.51 3.29 -90.66 -0.30 -1.81 16 21 C -0.11 -1.16 6.30 -25.03 -0.16 -1.32 16 22 C -0.12 -1.10 6.91 -24.70 -0.17 -1.27 16 23 C -0.12 -1.23 6.83 -25.07 -0.17 -1.40 16 24 C -0.12 -1.49 6.40 -25.61 -0.16 -1.66 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.08 1.15 7.41 -51.92 -0.38 0.77 16 29 H 0.09 1.47 8.11 -51.93 -0.42 1.05 16 30 H 0.05 1.13 7.83 -51.93 -0.41 0.73 16 31 H 0.07 1.69 6.80 -51.93 -0.35 1.34 16 32 H 0.02 0.43 6.61 -51.93 -0.34 0.08 16 33 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 34 H 0.40 5.56 8.59 -40.82 -0.35 5.21 16 35 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.07 0.73 7.85 -51.93 -0.41 0.32 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.09 1.35 6.39 -51.93 -0.33 1.02 16 LS Contribution 345.36 15.07 5.20 5.20 Total: -1.00 -32.67 345.36 -7.52 -40.20 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -7.14 Total: 6.48 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -0.74 Total: 4.91 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.01 Total: -45.98 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: 0.17 Total: -26.58 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.67 -7.52 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171404862.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.799 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds