Wall clock time and date at job start Tue Mar 31 2020 05:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21278 * 120.00164 * 2 1 4 4 N 1.34777 * 119.99834 * 179.97438 * 2 1 3 5 5 C 1.46929 * 120.62865 * 6.05533 * 4 2 1 6 6 C 1.53195 * 108.77033 * 233.62480 * 5 4 2 7 7 C 1.53041 * 109.31512 * 305.36116 * 6 5 4 8 8 C 1.53039 * 109.53280 * 61.36795 * 7 6 5 9 9 H 1.09002 * 109.50022 * 58.58902 * 8 7 6 10 10 C 1.50704 * 109.49719 * 178.64976 * 8 7 6 11 11 O 1.21287 * 119.99911 * 8.33109 * 10 8 7 12 12 N 1.34779 * 120.00201 * 188.33096 * 10 8 7 13 13 C 1.46500 * 119.99686 * 183.98350 * 12 10 8 14 14 C 1.46498 * 119.99705 * 3.97961 * 12 10 8 15 15 H 1.08999 * 109.47348 * 358.42824 * 14 12 10 16 16 C 1.52996 * 109.46870 * 118.42884 * 14 12 10 17 17 C 1.50706 * 109.46763 * 238.42557 * 14 12 10 18 18 H 1.07996 * 119.99989 * 0.02562 * 17 14 12 19 19 C 1.37878 * 119.99563 * 180.02562 * 17 14 12 20 20 N 1.31511 * 120.00145 * 0.02562 * 19 17 14 21 21 Si 1.86804 * 119.99752 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47134 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47229 * 119.99967 * 21 19 17 24 24 H 1.48505 * 109.46941 * 239.99947 * 21 19 17 25 25 C 1.46990 * 120.61633 * 186.07046 * 4 2 1 26 26 H 1.08992 * 109.47079 * 186.00143 * 1 2 3 27 27 H 1.09005 * 109.47061 * 306.00010 * 1 2 3 28 28 H 1.08996 * 109.46705 * 65.99533 * 1 2 3 29 29 H 1.08998 * 109.58767 * 113.84259 * 5 4 2 30 30 H 1.08997 * 109.70688 * 353.47977 * 5 4 2 31 31 H 1.09010 * 109.49544 * 185.41381 * 6 5 4 32 32 H 1.08998 * 109.49935 * 65.31741 * 6 5 4 33 33 H 1.08994 * 109.46102 * 301.35161 * 7 6 5 34 34 H 1.08997 * 109.46158 * 181.38743 * 7 6 5 35 35 H 1.08998 * 109.47623 * 84.83222 * 13 12 10 36 36 H 1.09002 * 109.46452 * 204.83562 * 13 12 10 37 37 H 1.09005 * 109.47193 * 324.82815 * 13 12 10 38 38 H 1.09003 * 109.47313 * 299.99776 * 16 14 12 39 39 H 1.09008 * 109.47364 * 59.99684 * 16 14 12 40 40 H 1.09000 * 109.47386 * 179.97438 * 16 14 12 41 41 H 0.96999 * 119.99894 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.62882 * 6.60024 * 25 4 2 43 43 H 1.09006 * 109.58673 * 246.15661 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4663 -2.4442 -0.1323 6 6 1.8674 -3.3568 1.0310 7 6 3.3916 -3.4903 1.0673 8 6 4.0205 -2.1137 1.2944 9 1 3.6503 -1.6944 2.2299 10 6 5.5197 -2.2508 1.3632 11 8 6.0448 -3.3104 1.0935 12 7 6.2771 -1.1961 1.7243 13 6 7.7381 -1.3033 1.7069 14 6 5.6393 0.0575 2.1339 15 1 4.5567 -0.0434 2.0569 16 6 6.0202 0.3742 3.5815 17 6 6.1049 1.1748 1.2361 18 1 6.8054 0.9713 0.4397 19 6 5.6365 2.4568 1.4314 20 7 4.7838 2.7046 2.4015 21 14 6.2130 3.8416 0.3181 22 1 7.1649 3.3047 -0.6873 23 1 5.0436 4.4382 -0.3759 24 1 6.8893 4.8828 1.1329 25 6 3.6446 -1.1866 0.1343 26 1 -0.3633 -1.0220 0.1074 27 1 -0.3633 0.6041 0.8314 28 1 -0.3632 0.4181 -0.9388 29 1 1.7351 -2.9168 -1.0770 30 1 0.3910 -2.2682 -0.1046 31 1 1.4193 -4.3408 0.8926 32 1 1.5175 -2.9258 1.9689 33 1 3.7431 -3.8982 0.1197 34 1 3.6783 -4.1589 1.8790 35 1 8.1060 -1.0938 0.7025 36 1 8.1633 -0.5842 2.4070 37 1 8.0319 -2.3117 1.9986 38 1 5.6835 -0.4340 4.2309 39 1 7.1029 0.4751 3.6586 40 1 5.5461 1.3071 3.8863 41 1 4.4545 3.6066 2.5391 42 1 4.0068 -0.1792 0.3395 43 1 4.0910 -1.5567 -0.7887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171551697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:48 Heat of formation + Delta-G solvation = -66.474981 kcal Electronic energy + Delta-G solvation = -24276.205123 eV Core-core repulsion = 20935.655342 eV Total energy + Delta-G solvation = -3340.549781 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.19163 -38.88790 -36.71400 -35.55284 -32.79429 -32.53854 -31.39588 -29.37716 -29.09619 -26.50699 -25.24911 -24.78711 -23.35877 -21.44544 -20.85848 -18.69944 -18.08953 -16.84302 -16.49812 -16.22225 -15.69942 -15.20835 -14.96613 -14.61465 -14.25910 -13.94311 -13.69769 -13.11847 -13.07270 -12.93570 -12.66654 -12.63478 -12.22402 -11.87797 -11.79141 -11.53296 -11.29595 -11.21442 -11.00088 -10.85426 -10.74146 -10.68953 -10.62394 -10.29587 -10.11500 -10.05800 -9.42264 -9.25828 -8.92548 -8.41992 -8.30534 -7.60527 -6.05681 -4.13630 2.99832 3.19038 3.31817 3.41323 3.42750 3.48354 3.99234 4.44526 4.76534 4.80795 4.99356 5.08024 5.20767 5.28388 5.33550 5.40883 5.50870 5.53929 5.65586 5.74025 5.90231 5.96942 6.01026 6.14022 6.17766 6.23732 6.28364 6.45843 6.52976 6.59441 6.70382 6.75281 6.80170 6.99459 7.21183 7.44663 7.73980 7.75949 7.92583 8.19037 8.48363 8.60086 8.83557 9.02295 9.55275 10.99485 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013397 B = 0.008465 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.443964 B = 3306.989717 C = 4817.924346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.502 3.498 3 O -0.515 6.515 4 N -0.614 5.614 5 C 0.101 3.899 6 C -0.135 4.135 7 C -0.098 4.098 8 C -0.115 4.115 9 H 0.095 0.905 10 C 0.514 3.486 11 O -0.575 6.575 12 N -0.589 5.589 13 C 0.098 3.902 14 C 0.250 3.750 15 H 0.058 0.942 16 C -0.152 4.152 17 C -0.534 4.534 18 H 0.060 0.940 19 C 0.076 3.924 20 N -0.878 5.878 21 Si 0.895 3.105 22 H -0.274 1.274 23 H -0.281 1.281 24 H -0.285 1.285 25 C 0.114 3.886 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.010 0.990 39 H 0.033 0.967 40 H 0.095 0.905 41 H 0.263 0.737 42 H 0.132 0.868 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.522 -9.117 -2.077 12.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.289 3.711 3 O -0.389 6.389 4 N -0.350 5.350 5 C -0.022 4.022 6 C -0.173 4.173 7 C -0.136 4.136 8 C -0.137 4.137 9 H 0.113 0.887 10 C 0.301 3.699 11 O -0.457 6.457 12 N -0.319 5.319 13 C -0.045 4.045 14 C 0.150 3.850 15 H 0.075 0.925 16 C -0.210 4.210 17 C -0.572 4.572 18 H 0.079 0.921 19 C -0.128 4.128 20 N -0.515 5.515 21 Si 0.723 3.277 22 H -0.199 1.199 23 H -0.207 1.207 24 H -0.211 1.211 25 C -0.008 4.008 26 H 0.097 0.903 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.029 0.971 39 H 0.052 0.948 40 H 0.114 0.886 41 H 0.073 0.927 42 H 0.150 0.850 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.017 -8.866 -2.123 12.140 hybrid contribution 0.283 0.822 -0.468 0.987 sum -7.735 -8.044 -2.590 11.456 Atomic orbital electron populations 1.22015 0.92691 1.03977 1.04921 1.20757 0.90294 0.83460 0.76552 1.90880 1.70037 1.30451 1.47502 1.48149 1.07463 1.05832 1.73528 1.21863 0.97226 0.84465 0.98637 1.21959 0.96805 0.99574 0.99008 1.21319 0.93598 0.95541 1.03148 1.21574 0.93163 0.97599 1.01390 0.88663 1.20290 0.88882 0.83527 0.77211 1.90581 1.74803 1.28096 1.52172 1.48318 1.06363 1.13929 1.63267 1.21348 0.81065 1.00873 1.01247 1.19203 0.94096 0.79416 0.92330 0.92472 1.22153 0.99975 1.01784 0.97113 1.21228 1.28221 0.92294 1.15442 0.92143 1.24795 0.94386 0.98508 0.95071 1.69822 1.30334 1.21119 1.30226 0.86483 0.78532 0.81976 0.80692 1.19878 1.20733 1.21121 1.21789 0.79124 1.03659 0.96230 0.90280 0.88954 0.89265 0.91519 0.89311 0.90689 0.91392 0.91161 0.91381 0.93667 0.91033 0.92669 0.97101 0.94793 0.88623 0.92729 0.85017 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 10.07 36.01 0.36 -1.64 16 2 C 0.50 8.65 7.79 -10.98 -0.09 8.56 16 3 O -0.51 -11.98 16.54 5.56 0.09 -11.89 16 4 N -0.61 -9.68 2.97 -172.71 -0.51 -10.19 16 5 C 0.10 1.11 6.35 -3.71 -0.02 1.08 16 6 C -0.14 -1.48 6.08 -26.61 -0.16 -1.64 16 7 C -0.10 -1.42 4.48 -26.69 -0.12 -1.54 16 8 C -0.12 -2.07 1.81 -91.65 -0.17 -2.24 16 9 H 0.10 1.79 7.17 -51.93 -0.37 1.41 16 10 C 0.51 10.75 6.96 -10.98 -0.08 10.68 16 11 O -0.57 -12.88 15.65 5.55 0.09 -12.80 16 12 N -0.59 -12.83 2.75 -175.26 -0.48 -13.31 16 13 C 0.10 1.93 9.54 59.85 0.57 2.51 16 14 C 0.25 5.95 1.79 -69.08 -0.12 5.83 16 15 H 0.06 1.45 4.45 -51.93 -0.23 1.21 16 16 C -0.15 -3.51 8.98 37.16 0.33 -3.18 16 17 C -0.53 -14.02 7.75 -34.44 -0.27 -14.28 16 18 H 0.06 1.62 7.59 -52.49 -0.40 1.22 16 19 C 0.08 2.06 5.30 -17.82 -0.09 1.97 16 20 N -0.88 -24.33 11.32 55.43 0.63 -23.70 16 21 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.11 2.16 5.32 -3.68 -0.02 2.14 16 26 H 0.08 0.65 5.19 -51.93 -0.27 0.38 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.09 0.72 5.08 -51.93 -0.26 0.46 16 31 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 1.36 6.53 -51.93 -0.34 1.02 16 37 H 0.05 1.03 7.53 -51.93 -0.39 0.64 16 38 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 39 H 0.03 0.75 6.73 -51.92 -0.35 0.40 16 40 H 0.10 2.42 6.07 -51.93 -0.32 2.11 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.13 3.09 4.40 -51.93 -0.23 2.86 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 332.68 15.07 5.01 5.01 Total: -1.00 -32.03 332.68 -6.58 -38.62 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.52 Total: 3.41 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: 0.13 Total: 8.25 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.37 Total: -47.20 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: 0.18 Total: -24.68 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.03 -6.58 -38.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171551697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.859 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds