Wall clock time and date at job start Tue Mar 31 2020 05:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21278 * 120.00164 * 2 1 4 4 N 1.34777 * 119.99834 * 179.97438 * 2 1 3 5 5 C 1.46929 * 120.62865 * 6.05533 * 4 2 1 6 6 C 1.53195 * 108.77033 * 233.62480 * 5 4 2 7 7 C 1.53041 * 109.31512 * 305.36116 * 6 5 4 8 8 C 1.53039 * 109.53280 * 61.36795 * 7 6 5 9 9 H 1.09002 * 109.50022 * 58.58902 * 8 7 6 10 10 C 1.50704 * 109.49719 * 178.64976 * 8 7 6 11 11 O 1.21287 * 119.99911 * 8.33109 * 10 8 7 12 12 N 1.34779 * 120.00201 * 188.33096 * 10 8 7 13 13 C 1.46500 * 119.99686 * 183.98350 * 12 10 8 14 14 C 1.46498 * 119.99705 * 3.97961 * 12 10 8 15 15 H 1.08999 * 109.47348 * 358.42824 * 14 12 10 16 16 C 1.52996 * 109.46870 * 118.42884 * 14 12 10 17 17 C 1.50706 * 109.46763 * 238.42557 * 14 12 10 18 18 H 1.07996 * 119.99989 * 0.02562 * 17 14 12 19 19 C 1.37878 * 119.99563 * 180.02562 * 17 14 12 20 20 N 1.31511 * 120.00145 * 0.02562 * 19 17 14 21 21 Si 1.86804 * 119.99752 * 180.02562 * 19 17 14 22 22 H 1.48498 * 109.47134 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47229 * 119.99967 * 21 19 17 24 24 H 1.48505 * 109.46941 * 239.99947 * 21 19 17 25 25 C 1.46990 * 120.61633 * 186.07046 * 4 2 1 26 26 H 1.08992 * 109.47079 * 186.00143 * 1 2 3 27 27 H 1.09005 * 109.47061 * 306.00010 * 1 2 3 28 28 H 1.08996 * 109.46705 * 65.99533 * 1 2 3 29 29 H 1.08998 * 109.58767 * 113.84259 * 5 4 2 30 30 H 1.08997 * 109.70688 * 353.47977 * 5 4 2 31 31 H 1.09010 * 109.49544 * 185.41381 * 6 5 4 32 32 H 1.08998 * 109.49935 * 65.31741 * 6 5 4 33 33 H 1.08994 * 109.46102 * 301.35161 * 7 6 5 34 34 H 1.08997 * 109.46158 * 181.38743 * 7 6 5 35 35 H 1.08998 * 109.47623 * 84.83222 * 13 12 10 36 36 H 1.09002 * 109.46452 * 204.83562 * 13 12 10 37 37 H 1.09005 * 109.47193 * 324.82815 * 13 12 10 38 38 H 1.09003 * 109.47313 * 299.99776 * 16 14 12 39 39 H 1.09008 * 109.47364 * 59.99684 * 16 14 12 40 40 H 1.09000 * 109.47386 * 179.97438 * 16 14 12 41 41 H 0.96999 * 119.99894 * 179.97438 * 20 19 17 42 42 H 1.09000 * 109.62882 * 6.60024 * 25 4 2 43 43 H 1.09006 * 109.58673 * 246.15661 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4663 -2.4442 -0.1323 6 6 1.8674 -3.3568 1.0310 7 6 3.3916 -3.4903 1.0673 8 6 4.0205 -2.1137 1.2944 9 1 3.6503 -1.6944 2.2299 10 6 5.5197 -2.2508 1.3632 11 8 6.0448 -3.3104 1.0935 12 7 6.2771 -1.1961 1.7243 13 6 7.7381 -1.3033 1.7069 14 6 5.6393 0.0575 2.1339 15 1 4.5567 -0.0434 2.0569 16 6 6.0202 0.3742 3.5815 17 6 6.1049 1.1748 1.2361 18 1 6.8054 0.9713 0.4397 19 6 5.6365 2.4568 1.4314 20 7 4.7838 2.7046 2.4015 21 14 6.2130 3.8416 0.3181 22 1 7.1649 3.3047 -0.6873 23 1 5.0436 4.4382 -0.3759 24 1 6.8893 4.8828 1.1329 25 6 3.6446 -1.1866 0.1343 26 1 -0.3633 -1.0220 0.1074 27 1 -0.3633 0.6041 0.8314 28 1 -0.3632 0.4181 -0.9388 29 1 1.7351 -2.9168 -1.0770 30 1 0.3910 -2.2682 -0.1046 31 1 1.4193 -4.3408 0.8926 32 1 1.5175 -2.9258 1.9689 33 1 3.7431 -3.8982 0.1197 34 1 3.6783 -4.1589 1.8790 35 1 8.1060 -1.0938 0.7025 36 1 8.1633 -0.5842 2.4070 37 1 8.0319 -2.3117 1.9986 38 1 5.6835 -0.4340 4.2309 39 1 7.1029 0.4751 3.6586 40 1 5.5461 1.3071 3.8863 41 1 4.4545 3.6066 2.5391 42 1 4.0068 -0.1792 0.3395 43 1 4.0910 -1.5567 -0.7887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171551697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:47 Heat of formation + Delta-G solvation = -87.497672 kcal Electronic energy + Delta-G solvation = -24277.116736 eV Core-core repulsion = 20935.655342 eV Total energy + Delta-G solvation = -3341.461393 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.63755 -40.42238 -38.08417 -37.37959 -34.54765 -34.11521 -32.57342 -31.02906 -30.45288 -28.02952 -27.28994 -26.04204 -24.71604 -23.14644 -22.20589 -19.97339 -19.72389 -18.48262 -18.11819 -17.84693 -17.05236 -16.92622 -16.41403 -16.21452 -15.90292 -15.26955 -14.98852 -14.79946 -14.58162 -14.21513 -14.18392 -14.00056 -13.50331 -13.43269 -13.18666 -12.97912 -12.93119 -12.87803 -12.70506 -12.58196 -12.40482 -12.21855 -12.07475 -11.87218 -11.68980 -11.55588 -11.21810 -10.85528 -10.57480 -10.47014 -9.62752 -9.40411 -8.13727 -6.25746 1.35693 1.40957 1.47934 1.54964 1.77828 2.11561 2.32221 2.48202 3.18169 3.59256 3.67328 3.85455 3.94152 4.03754 4.12089 4.19347 4.40167 4.52923 4.60270 4.64447 4.67159 4.69607 4.71674 4.79693 4.89119 4.90914 4.95400 4.96508 5.01956 5.10798 5.15038 5.26062 5.35374 5.42601 5.52568 5.56869 5.73481 5.94319 6.19498 6.54407 6.64297 6.82042 7.25568 7.31418 7.46314 8.89787 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013397 B = 0.008465 C = 0.005810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.443964 B = 3306.989717 C = 4817.924346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.489 3.511 3 O -0.591 6.591 4 N -0.611 5.611 5 C 0.094 3.906 6 C -0.127 4.127 7 C -0.094 4.094 8 C -0.107 4.107 9 H 0.084 0.916 10 C 0.508 3.492 11 O -0.589 6.589 12 N -0.597 5.597 13 C 0.097 3.903 14 C 0.261 3.739 15 H 0.041 0.959 16 C -0.142 4.142 17 C -0.537 4.537 18 H 0.049 0.951 19 C 0.035 3.965 20 N -0.898 5.898 21 Si 0.944 3.056 22 H -0.271 1.271 23 H -0.292 1.292 24 H -0.273 1.273 25 C 0.121 3.879 26 H 0.119 0.881 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.129 0.871 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.039 0.961 40 H 0.073 0.927 41 H 0.261 0.739 42 H 0.083 0.917 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.286 -10.945 -2.426 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.280 3.720 3 O -0.470 6.470 4 N -0.345 5.345 5 C -0.027 4.027 6 C -0.165 4.165 7 C -0.132 4.132 8 C -0.129 4.129 9 H 0.102 0.898 10 C 0.297 3.703 11 O -0.471 6.471 12 N -0.327 5.327 13 C -0.046 4.046 14 C 0.159 3.841 15 H 0.059 0.941 16 C -0.201 4.201 17 C -0.575 4.575 18 H 0.067 0.933 19 C -0.166 4.166 20 N -0.536 5.536 21 Si 0.771 3.229 22 H -0.195 1.195 23 H -0.219 1.219 24 H -0.198 1.198 25 C -0.003 4.003 26 H 0.137 0.863 27 H 0.112 0.888 28 H 0.124 0.876 29 H 0.100 0.900 30 H 0.146 0.854 31 H 0.133 0.867 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.045 0.955 39 H 0.058 0.942 40 H 0.092 0.908 41 H 0.070 0.930 42 H 0.101 0.899 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.790 -10.753 -2.471 14.751 hybrid contribution 0.856 1.312 -0.393 1.616 sum -8.933 -9.441 -2.865 13.310 Atomic orbital electron populations 1.22026 0.87499 1.06768 1.05879 1.21929 0.92711 0.82574 0.74782 1.90845 1.71959 1.33175 1.51064 1.48312 1.06181 1.07700 1.72336 1.22293 0.98920 0.81997 0.99445 1.21966 0.93790 1.01678 0.99030 1.21343 0.96252 0.92741 1.02845 1.21543 0.91224 0.99729 1.00374 0.89771 1.20830 0.90177 0.82959 0.76381 1.90560 1.75459 1.28415 1.52715 1.48355 1.07276 1.13531 1.63533 1.21425 0.80097 1.01689 1.01367 1.18898 0.93254 0.79600 0.92297 0.94088 1.21992 1.00076 1.01171 0.96815 1.21375 1.27617 0.93172 1.15364 0.93269 1.25390 0.94698 1.00384 0.96174 1.69918 1.31163 1.21253 1.31275 0.85718 0.77714 0.80030 0.79424 1.19536 1.21881 1.19850 1.21371 0.81719 1.00965 0.96224 0.86274 0.88780 0.87618 0.90024 0.85355 0.86731 0.91295 0.91528 0.91412 0.93833 0.90532 0.91537 0.95508 0.94218 0.90825 0.92951 0.89905 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 10.07 71.24 0.72 -2.50 16 2 C 0.49 16.68 7.79 87.66 0.68 17.37 16 3 O -0.59 -28.73 16.54 -3.02 -0.05 -28.78 16 4 N -0.61 -18.64 2.97 -818.73 -2.43 -21.07 16 5 C 0.09 1.69 6.35 86.36 0.55 2.24 16 6 C -0.13 -2.26 6.08 30.67 0.19 -2.07 16 7 C -0.09 -2.53 4.48 30.62 0.14 -2.39 16 8 C -0.11 -3.84 1.81 -11.46 -0.02 -3.86 16 9 H 0.08 3.21 7.17 -2.39 -0.02 3.19 16 10 C 0.51 21.41 6.96 87.66 0.61 22.02 16 11 O -0.59 -26.17 15.65 -3.05 -0.05 -26.22 16 12 N -0.60 -26.40 2.75 -826.77 -2.28 -28.68 16 13 C 0.10 3.83 9.54 127.77 1.22 5.05 16 14 C 0.26 12.77 1.79 44.25 0.08 12.85 16 15 H 0.04 2.17 4.45 -2.39 -0.01 2.16 16 16 C -0.14 -6.65 8.98 71.98 0.65 -6.00 16 17 C -0.54 -29.07 7.75 25.60 0.20 -28.87 16 18 H 0.05 2.72 7.59 -2.91 -0.02 2.69 16 19 C 0.04 1.95 5.30 84.66 0.45 2.40 16 20 N -0.90 -51.30 11.32 21.45 0.24 -51.06 16 21 Si 0.94 45.40 29.54 68.60 2.03 47.42 16 22 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 23 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 C 0.12 4.68 5.32 86.35 0.46 5.14 16 26 H 0.12 1.31 5.19 -2.39 -0.01 1.30 16 27 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.13 1.31 5.08 -2.39 -0.01 1.30 16 31 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.07 1.85 8.05 -2.39 -0.02 1.83 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 2.91 6.53 -2.39 -0.02 2.89 16 37 H 0.07 2.46 7.53 -2.38 -0.02 2.44 16 38 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.04 1.76 6.73 -2.38 -0.02 1.74 16 40 H 0.07 3.81 6.07 -2.39 -0.01 3.79 16 41 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.08 4.10 4.40 -2.39 -0.01 4.09 16 43 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 Total: -1.00 -73.74 332.68 4.38 -69.35 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 1.01 Total: 17.65 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: 5.91 Total: 21.38 kcal Atomic # 7 Polarization: -96.34 SS G_CDS: -4.47 Total: -100.81 kcal Atomic # 8 Polarization: -54.90 SS G_CDS: -0.10 Total: -55.00 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -73.74 4.38 -69.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171551697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.145 kcal (2) G-P(sol) polarization free energy of solvation -73.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds