Wall clock time and date at job start Tue Mar 31 2020 05:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21276 * 120.00021 * 2 1 4 4 N 1.34773 * 119.99952 * 180.02562 * 2 1 3 5 5 C 1.46929 * 120.63031 * 3.84751 * 4 2 1 6 6 C 1.53194 * 108.77420 * 126.37462 * 5 4 2 7 7 C 1.53036 * 109.31623 * 54.63350 * 6 5 4 8 8 C 1.53044 * 109.53821 * 298.63734 * 7 6 5 9 9 H 1.08998 * 109.51924 * 301.39289 * 8 7 6 10 10 C 1.50695 * 109.49863 * 181.31642 * 8 7 6 11 11 O 1.21290 * 119.99936 * 350.47872 * 10 8 7 12 12 N 1.34773 * 120.00413 * 170.47841 * 10 8 7 13 13 C 1.46501 * 120.00388 * 182.60092 * 12 10 8 14 14 C 1.46501 * 119.99446 * 2.59919 * 12 10 8 15 15 H 1.08992 * 109.47605 * 4.37510 * 14 12 10 16 16 C 1.53000 * 109.46722 * 124.37425 * 14 12 10 17 17 C 1.50699 * 109.47105 * 244.36932 * 14 12 10 18 18 H 1.07999 * 120.00424 * 354.63447 * 17 14 12 19 19 C 1.37880 * 120.00056 * 174.62807 * 17 14 12 20 20 N 1.31516 * 120.00035 * 158.88940 * 19 17 14 21 21 Si 1.86807 * 119.99716 * 338.88847 * 19 17 14 22 22 H 1.48501 * 109.46695 * 180.02562 * 21 19 17 23 23 H 1.48499 * 109.47185 * 60.00118 * 21 19 17 24 24 H 1.48492 * 109.47025 * 299.99663 * 21 19 17 25 25 C 1.46930 * 120.63174 * 183.82780 * 4 2 1 26 26 H 1.09003 * 109.46501 * 264.20828 * 1 2 3 27 27 H 1.08994 * 109.47237 * 24.20731 * 1 2 3 28 28 H 1.08997 * 109.47261 * 144.20743 * 1 2 3 29 29 H 1.09002 * 109.58707 * 246.15648 * 5 4 2 30 30 H 1.09000 * 109.58831 * 6.44491 * 5 4 2 31 31 H 1.08997 * 109.49622 * 174.59307 * 6 5 4 32 32 H 1.09005 * 109.49623 * 294.64640 * 6 5 4 33 33 H 1.09000 * 109.45838 * 178.61651 * 7 6 5 34 34 H 1.09001 * 109.45654 * 58.65801 * 7 6 5 35 35 H 1.08996 * 109.46880 * 275.10188 * 13 12 10 36 36 H 1.09000 * 109.46590 * 35.10203 * 13 12 10 37 37 H 1.09000 * 109.47238 * 155.10216 * 13 12 10 38 38 H 1.09001 * 109.47421 * 64.35327 * 16 14 12 39 39 H 1.09004 * 109.47122 * 184.35165 * 16 14 12 40 40 H 1.09000 * 109.47502 * 304.34912 * 16 14 12 41 41 H 0.96995 * 120.00180 * 354.94147 * 20 19 17 42 42 H 1.08998 * 109.58302 * 113.84423 * 25 4 2 43 43 H 1.08997 * 109.58331 * 353.41898 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4627 -2.4462 -0.0859 6 6 2.0384 -3.2580 -1.2505 7 6 3.5518 -3.3977 -1.0710 8 6 4.1987 -2.0108 -1.0826 9 1 3.9697 -1.5100 -2.0233 10 6 5.6922 -2.1512 -0.9382 11 8 6.1762 -3.2290 -0.6638 12 7 6.4900 -1.0793 -1.1140 13 6 7.9451 -1.2275 -1.0299 14 6 5.9021 0.2340 -1.3892 15 1 4.8156 0.1639 -1.3374 16 6 6.3981 1.2424 -0.3510 17 6 6.3110 0.6888 -2.7665 18 1 7.0140 0.1045 -3.3416 19 6 5.7876 1.8509 -3.2925 20 7 6.4141 2.4717 -4.2681 21 14 4.1885 2.5434 -2.6195 22 1 3.8427 3.7894 -3.3496 23 1 4.3488 2.8442 -1.1741 24 1 3.1026 1.5468 -2.8003 25 6 3.6476 -1.1848 0.0839 26 1 -0.3632 -0.1037 1.0225 27 1 -0.3633 0.9372 -0.4214 28 1 -0.3633 -0.8335 -0.6010 29 1 1.5909 -3.0000 0.8441 30 1 0.4026 -2.2593 -0.2568 31 1 1.5809 -4.2472 -1.2656 32 1 1.8287 -2.7460 -2.1897 33 1 3.9603 -3.9959 -1.8854 34 1 3.7608 -3.8880 -0.1202 35 1 8.2574 -1.1602 0.0122 36 1 8.2355 -2.1971 -1.4344 37 1 8.4248 -0.4354 -1.6048 38 1 7.4756 1.3704 -0.4545 39 1 5.9018 2.2000 -0.5085 40 1 6.1704 0.8755 0.6498 41 1 7.2801 2.1540 -4.5679 42 1 3.9539 -1.6359 1.0277 43 1 4.0294 -0.1658 0.0226 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171551709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:52 Heat of formation + Delta-G solvation = -69.210207 kcal Electronic energy + Delta-G solvation = -24368.128783 eV Core-core repulsion = 21027.460394 eV Total energy + Delta-G solvation = -3340.668389 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.44627 -39.10225 -36.93765 -35.75080 -33.00023 -32.61933 -31.62097 -29.86003 -29.57673 -26.67701 -25.09630 -24.73826 -23.55521 -21.50433 -20.91387 -18.94536 -18.19463 -17.63610 -16.89305 -16.53069 -15.97644 -15.50180 -15.06110 -14.77714 -14.24853 -13.88135 -13.77783 -13.32804 -13.26018 -13.18261 -12.94571 -12.54121 -12.37247 -12.17157 -12.12375 -11.95172 -11.67635 -11.38092 -11.34927 -11.13440 -10.90217 -10.81658 -10.52076 -10.47663 -9.91001 -9.80198 -9.71944 -9.17760 -9.12600 -8.59522 -8.33390 -7.81722 -6.52651 -4.19203 2.70469 2.95693 3.27315 3.46980 3.55645 3.66035 3.85004 4.46110 4.55746 4.67504 4.87703 4.93009 5.08207 5.10578 5.13780 5.22764 5.26703 5.34474 5.47430 5.59187 5.73182 5.80834 5.82477 5.94630 5.99655 6.08332 6.11101 6.20456 6.30018 6.39001 6.42131 6.44204 6.51081 6.53649 6.87301 6.99510 7.40599 7.45606 7.82511 8.21265 8.26863 8.32275 8.74143 8.89891 9.48617 10.81754 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.009033 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.587088 B = 3098.845004 C = 4451.404902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.506 3.494 3 O -0.533 6.533 4 N -0.613 5.613 5 C 0.104 3.896 6 C -0.137 4.137 7 C -0.097 4.097 8 C -0.121 4.121 9 H 0.104 0.896 10 C 0.516 3.484 11 O -0.570 6.570 12 N -0.583 5.583 13 C 0.096 3.904 14 C 0.225 3.775 15 H 0.052 0.948 16 C -0.162 4.162 17 C -0.622 4.622 18 H 0.063 0.937 19 C 0.045 3.955 20 N -0.893 5.893 21 Si 1.030 2.970 22 H -0.286 1.286 23 H -0.266 1.266 24 H -0.281 1.281 25 C 0.113 3.887 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.065 0.935 40 H 0.027 0.973 41 H 0.270 0.730 42 H 0.068 0.932 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.715 -8.998 8.981 17.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.295 3.705 3 O -0.409 6.409 4 N -0.348 5.348 5 C -0.019 4.019 6 C -0.175 4.175 7 C -0.135 4.135 8 C -0.143 4.143 9 H 0.123 0.877 10 C 0.303 3.697 11 O -0.451 6.451 12 N -0.313 5.313 13 C -0.047 4.047 14 C 0.123 3.877 15 H 0.070 0.930 16 C -0.220 4.220 17 C -0.659 4.659 18 H 0.081 0.919 19 C -0.163 4.163 20 N -0.525 5.525 21 Si 0.858 3.142 22 H -0.212 1.212 23 H -0.192 1.192 24 H -0.207 1.207 25 C -0.009 4.009 26 H 0.110 0.890 27 H 0.111 0.889 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.046 0.954 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -12.223 -7.715 8.893 16.971 hybrid contribution 1.224 -1.214 0.013 1.724 sum -10.999 -8.929 8.906 16.734 Atomic orbital electron populations 1.21970 0.91982 1.05034 1.04322 1.20836 0.90614 0.83171 0.75883 1.90773 1.70465 1.30805 1.48882 1.48146 1.06873 1.06204 1.73569 1.21852 0.96600 0.84344 0.99073 1.21969 0.96422 1.00314 0.98815 1.21302 0.93587 0.95158 1.03419 1.21638 0.92737 0.98383 1.01590 0.87744 1.20243 0.88566 0.83823 0.77066 1.90596 1.76735 1.27201 1.50545 1.48040 1.06349 1.09617 1.67245 1.21409 0.80953 1.02100 1.00241 1.19501 0.94257 0.78227 0.95700 0.93050 1.22496 1.01813 1.00675 0.97010 1.22139 1.31968 1.11025 1.00816 0.91880 1.25664 1.02385 0.93159 0.95071 1.70852 1.15319 1.38145 1.28178 0.84234 0.76009 0.76985 0.77009 1.21194 1.19162 1.20718 1.21795 0.79297 1.02976 0.96876 0.89045 0.88923 0.89858 0.91213 0.89340 0.90352 0.91158 0.91033 0.91045 0.94021 0.92337 0.90392 0.92981 0.91640 0.95399 0.91991 0.91331 0.87154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 9.52 36.01 0.34 -1.30 16 2 C 0.51 7.61 7.80 -10.99 -0.09 7.52 16 3 O -0.53 -10.65 16.51 5.56 0.09 -10.56 16 4 N -0.61 -8.54 2.97 -172.77 -0.51 -9.05 16 5 C 0.10 0.99 6.32 -3.71 -0.02 0.97 16 6 C -0.14 -1.42 6.08 -26.61 -0.16 -1.58 16 7 C -0.10 -1.35 4.49 -26.69 -0.12 -1.47 16 8 C -0.12 -2.12 1.82 -91.65 -0.17 -2.29 16 9 H 0.10 2.03 7.48 -51.93 -0.39 1.64 16 10 C 0.52 10.60 6.97 -10.99 -0.08 10.52 16 11 O -0.57 -12.52 15.70 5.55 0.09 -12.43 16 12 N -0.58 -12.57 2.75 -175.27 -0.48 -13.05 16 13 C 0.10 1.89 9.28 59.85 0.56 2.44 16 14 C 0.23 5.23 1.39 -69.08 -0.10 5.13 16 15 H 0.05 1.21 2.61 -51.93 -0.14 1.08 16 16 C -0.16 -3.54 8.58 37.16 0.32 -3.22 16 17 C -0.62 -16.89 8.34 -34.44 -0.29 -17.17 16 18 H 0.06 1.86 7.78 -52.49 -0.41 1.45 16 19 C 0.04 1.27 5.31 -17.82 -0.09 1.17 16 20 N -0.89 -26.83 13.70 55.43 0.76 -26.07 16 21 Si 1.03 25.94 26.50 -169.99 -4.50 21.44 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.27 -6.44 5.70 56.52 0.32 -6.12 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 C 0.11 1.88 5.30 -3.71 -0.02 1.86 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.08 0.58 6.12 -51.93 -0.32 0.27 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.60 5.39 -51.93 -0.28 0.32 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 1.13 7.62 -51.93 -0.40 0.73 16 37 H 0.08 1.57 7.21 -51.93 -0.37 1.20 16 38 H 0.05 1.11 7.63 -51.93 -0.40 0.72 16 39 H 0.06 1.50 5.12 -51.93 -0.27 1.23 16 40 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.27 8.04 8.73 -40.82 -0.36 7.69 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.11 2.17 4.30 -51.93 -0.22 1.94 16 LS Contribution 330.56 15.07 4.98 4.98 Total: -1.00 -33.58 330.56 -6.14 -39.71 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -6.64 Total: 2.45 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: 0.09 Total: 2.58 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: -0.24 Total: -48.16 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: 0.18 Total: -22.99 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -4.50 Total: 21.44 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.58 -6.14 -39.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171551709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.499 kcal (2) G-P(sol) polarization free energy of solvation -33.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds