Wall clock time and date at job start Tue Mar 31 2020 05:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21276 * 120.00021 * 2 1 4 4 N 1.34773 * 119.99952 * 180.02562 * 2 1 3 5 5 C 1.46929 * 120.63031 * 3.84751 * 4 2 1 6 6 C 1.53194 * 108.77420 * 126.37462 * 5 4 2 7 7 C 1.53036 * 109.31623 * 54.63350 * 6 5 4 8 8 C 1.53044 * 109.53821 * 298.63734 * 7 6 5 9 9 H 1.08998 * 109.51924 * 301.39289 * 8 7 6 10 10 C 1.50695 * 109.49863 * 181.31642 * 8 7 6 11 11 O 1.21290 * 119.99936 * 350.47872 * 10 8 7 12 12 N 1.34773 * 120.00413 * 170.47841 * 10 8 7 13 13 C 1.46501 * 120.00388 * 182.60092 * 12 10 8 14 14 C 1.46501 * 119.99446 * 2.59919 * 12 10 8 15 15 H 1.08992 * 109.47605 * 4.37510 * 14 12 10 16 16 C 1.53000 * 109.46722 * 124.37425 * 14 12 10 17 17 C 1.50699 * 109.47105 * 244.36932 * 14 12 10 18 18 H 1.07999 * 120.00424 * 354.63447 * 17 14 12 19 19 C 1.37880 * 120.00056 * 174.62807 * 17 14 12 20 20 N 1.31516 * 120.00035 * 158.88940 * 19 17 14 21 21 Si 1.86807 * 119.99716 * 338.88847 * 19 17 14 22 22 H 1.48501 * 109.46695 * 180.02562 * 21 19 17 23 23 H 1.48499 * 109.47185 * 60.00118 * 21 19 17 24 24 H 1.48492 * 109.47025 * 299.99663 * 21 19 17 25 25 C 1.46930 * 120.63174 * 183.82780 * 4 2 1 26 26 H 1.09003 * 109.46501 * 264.20828 * 1 2 3 27 27 H 1.08994 * 109.47237 * 24.20731 * 1 2 3 28 28 H 1.08997 * 109.47261 * 144.20743 * 1 2 3 29 29 H 1.09002 * 109.58707 * 246.15648 * 5 4 2 30 30 H 1.09000 * 109.58831 * 6.44491 * 5 4 2 31 31 H 1.08997 * 109.49622 * 174.59307 * 6 5 4 32 32 H 1.09005 * 109.49623 * 294.64640 * 6 5 4 33 33 H 1.09000 * 109.45838 * 178.61651 * 7 6 5 34 34 H 1.09001 * 109.45654 * 58.65801 * 7 6 5 35 35 H 1.08996 * 109.46880 * 275.10188 * 13 12 10 36 36 H 1.09000 * 109.46590 * 35.10203 * 13 12 10 37 37 H 1.09000 * 109.47238 * 155.10216 * 13 12 10 38 38 H 1.09001 * 109.47421 * 64.35327 * 16 14 12 39 39 H 1.09004 * 109.47122 * 184.35165 * 16 14 12 40 40 H 1.09000 * 109.47502 * 304.34912 * 16 14 12 41 41 H 0.96995 * 120.00180 * 354.94147 * 20 19 17 42 42 H 1.08998 * 109.58302 * 113.84423 * 25 4 2 43 43 H 1.08997 * 109.58331 * 353.41898 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4627 -2.4462 -0.0859 6 6 2.0384 -3.2580 -1.2505 7 6 3.5518 -3.3977 -1.0710 8 6 4.1987 -2.0108 -1.0826 9 1 3.9697 -1.5100 -2.0233 10 6 5.6922 -2.1512 -0.9382 11 8 6.1762 -3.2290 -0.6638 12 7 6.4900 -1.0793 -1.1140 13 6 7.9451 -1.2275 -1.0299 14 6 5.9021 0.2340 -1.3892 15 1 4.8156 0.1639 -1.3374 16 6 6.3981 1.2424 -0.3510 17 6 6.3110 0.6888 -2.7665 18 1 7.0140 0.1045 -3.3416 19 6 5.7876 1.8509 -3.2925 20 7 6.4141 2.4717 -4.2681 21 14 4.1885 2.5434 -2.6195 22 1 3.8427 3.7894 -3.3496 23 1 4.3488 2.8442 -1.1741 24 1 3.1026 1.5468 -2.8003 25 6 3.6476 -1.1848 0.0839 26 1 -0.3632 -0.1037 1.0225 27 1 -0.3633 0.9372 -0.4214 28 1 -0.3633 -0.8335 -0.6010 29 1 1.5909 -3.0000 0.8441 30 1 0.4026 -2.2593 -0.2568 31 1 1.5809 -4.2472 -1.2656 32 1 1.8287 -2.7460 -2.1897 33 1 3.9603 -3.9959 -1.8854 34 1 3.7608 -3.8880 -0.1202 35 1 8.2574 -1.1602 0.0122 36 1 8.2355 -2.1971 -1.4344 37 1 8.4248 -0.4354 -1.6048 38 1 7.4756 1.3704 -0.4545 39 1 5.9018 2.2000 -0.5085 40 1 6.1704 0.8755 0.6498 41 1 7.2801 2.1540 -4.5679 42 1 3.9539 -1.6359 1.0277 43 1 4.0294 -0.1658 0.0226 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171551709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:52 Heat of formation + Delta-G solvation = -92.511769 kcal Electronic energy + Delta-G solvation = -24369.139215 eV Core-core repulsion = 21027.460394 eV Total energy + Delta-G solvation = -3341.678821 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 282.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.76776 -40.50572 -38.15060 -37.55078 -34.74432 -34.17990 -32.68034 -31.73735 -30.49106 -28.16924 -26.88204 -26.10211 -24.78703 -23.12444 -22.25691 -20.00925 -19.98666 -19.51573 -18.19836 -18.01487 -17.15475 -16.91248 -16.43596 -16.12873 -15.80230 -15.48736 -15.06951 -15.01401 -14.63863 -14.36475 -14.14681 -14.04259 -13.77305 -13.71265 -13.42876 -13.29135 -13.09510 -12.98481 -12.87495 -12.50259 -12.47334 -12.04523 -11.85756 -11.78788 -11.70221 -11.64574 -11.23408 -11.00206 -10.71133 -10.49240 -9.73082 -9.62033 -8.77038 -6.45662 1.44242 1.48032 1.48932 1.62797 1.71670 1.98997 2.26510 2.35838 2.92235 3.48112 3.55551 3.76792 3.90388 4.01624 4.09346 4.15489 4.28283 4.42899 4.48414 4.48879 4.51456 4.63241 4.64311 4.66066 4.69243 4.72561 4.80498 4.81273 4.90773 4.98804 5.06344 5.11990 5.21330 5.23315 5.38776 5.46129 5.62302 5.78041 5.97287 6.37339 6.45635 6.64120 7.14226 7.19974 7.29222 8.53513 Molecular weight = 282.17amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.009033 C = 0.006289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.587088 B = 3098.845004 C = 4451.404902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.493 3.507 3 O -0.594 6.594 4 N -0.613 5.613 5 C 0.099 3.901 6 C -0.131 4.131 7 C -0.093 4.093 8 C -0.117 4.117 9 H 0.079 0.921 10 C 0.511 3.489 11 O -0.584 6.584 12 N -0.594 5.594 13 C 0.096 3.904 14 C 0.233 3.767 15 H 0.057 0.943 16 C -0.156 4.156 17 C -0.615 4.615 18 H 0.030 0.970 19 C 0.007 3.993 20 N -0.924 5.924 21 Si 1.067 2.933 22 H -0.288 1.288 23 H -0.252 1.252 24 H -0.275 1.275 25 C 0.117 3.883 26 H 0.120 0.880 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.091 0.909 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.260 0.740 42 H 0.080 0.920 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.668 -10.628 10.837 21.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.284 3.716 3 O -0.475 6.475 4 N -0.346 5.346 5 C -0.022 4.022 6 C -0.169 4.169 7 C -0.131 4.131 8 C -0.139 4.139 9 H 0.097 0.903 10 C 0.299 3.701 11 O -0.466 6.466 12 N -0.324 5.324 13 C -0.047 4.047 14 C 0.130 3.870 15 H 0.074 0.926 16 C -0.214 4.214 17 C -0.653 4.653 18 H 0.048 0.952 19 C -0.195 4.195 20 N -0.558 5.558 21 Si 0.891 3.109 22 H -0.214 1.214 23 H -0.177 1.177 24 H -0.200 1.200 25 C -0.007 4.007 26 H 0.138 0.862 27 H 0.107 0.893 28 H 0.133 0.867 29 H 0.110 0.890 30 H 0.145 0.855 31 H 0.133 0.867 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -15.191 -9.404 10.758 20.855 hybrid contribution 2.230 -0.830 -0.576 2.448 sum -12.961 -10.234 10.182 19.401 Atomic orbital electron populations 1.22012 0.87322 1.06201 1.06718 1.21934 0.92845 0.82386 0.74420 1.90737 1.72034 1.32964 1.51742 1.48327 1.05679 1.07898 1.72712 1.22242 0.98016 0.82224 0.99674 1.21982 0.93539 1.02485 0.98850 1.21331 0.96164 0.92431 1.03196 1.21645 0.90728 1.00746 1.00763 0.90282 1.20832 0.89907 0.83136 0.76180 1.90576 1.77399 1.27453 1.51155 1.48114 1.07190 1.09399 1.67672 1.21451 0.80201 1.01590 1.01435 1.19281 0.94605 0.79376 0.93741 0.92598 1.22363 1.01565 0.99646 0.97822 1.22276 1.30383 1.10206 1.02452 0.95160 1.26617 1.04215 0.93808 0.94904 1.70933 1.15439 1.39384 1.30028 0.83728 0.73462 0.76505 0.77254 1.21418 1.17709 1.20021 1.21525 0.81634 1.00790 0.96745 0.86201 0.89347 0.86733 0.89049 0.85530 0.86719 0.92047 0.92256 0.90561 0.91779 0.92304 0.91650 0.92981 0.92684 0.92972 0.93125 0.90172 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.52 71.24 0.68 -1.73 16 2 C 0.49 13.63 7.80 87.66 0.68 14.31 16 3 O -0.59 -23.30 16.51 -3.02 -0.05 -23.35 16 4 N -0.61 -15.35 2.97 -818.90 -2.43 -17.78 16 5 C 0.10 1.41 6.32 86.36 0.55 1.96 16 6 C -0.13 -2.19 6.08 30.67 0.19 -2.01 16 7 C -0.09 -2.41 4.49 30.62 0.14 -2.27 16 8 C -0.12 -4.00 1.82 -11.46 -0.02 -4.02 16 9 H 0.08 3.11 7.48 -2.39 -0.02 3.09 16 10 C 0.51 20.89 6.97 87.66 0.61 21.50 16 11 O -0.58 -25.32 15.70 -3.06 -0.05 -25.37 16 12 N -0.59 -25.77 2.75 -826.81 -2.28 -28.04 16 13 C 0.10 3.79 9.28 127.77 1.19 4.98 16 14 C 0.23 10.91 1.39 44.24 0.06 10.98 16 15 H 0.06 2.65 2.61 -2.39 -0.01 2.65 16 16 C -0.16 -6.77 8.58 71.98 0.62 -6.16 16 17 C -0.62 -34.40 8.34 25.60 0.21 -34.18 16 18 H 0.03 1.86 7.78 -2.91 -0.02 1.84 16 19 C 0.01 0.38 5.31 84.66 0.45 0.83 16 20 N -0.92 -57.16 13.70 21.45 0.29 -56.86 16 21 Si 1.07 53.40 26.50 68.60 1.82 55.22 16 22 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 23 H -0.25 -12.02 5.70 99.48 0.57 -11.45 16 24 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 25 C 0.12 3.73 5.30 86.36 0.46 4.19 16 26 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.11 0.94 6.12 -2.39 -0.01 0.92 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.13 0.89 5.39 -2.39 -0.01 0.87 16 31 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 1.91 8.04 -2.39 -0.02 1.89 16 35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.06 2.29 7.62 -2.39 -0.02 2.27 16 37 H 0.06 2.71 7.21 -2.39 -0.02 2.69 16 38 H 0.05 2.22 7.63 -2.39 -0.02 2.20 16 39 H 0.05 2.50 5.12 -2.38 -0.01 2.49 16 40 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.26 16.13 8.73 -92.71 -0.81 15.32 16 42 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.08 3.04 4.30 -2.39 -0.01 3.03 16 Total: -1.00 -76.37 330.56 3.94 -72.43 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.83 Total: 15.39 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 5.81 Total: 8.38 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -4.42 Total: -102.69 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -0.10 Total: -48.72 kcal Atomic # 14 Polarization: 53.40 SS G_CDS: 1.82 Total: 55.22 kcal Total: -76.37 3.94 -72.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171551709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.086 kcal (2) G-P(sol) polarization free energy of solvation -76.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds